Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Forward (+)

40462272 .. 40475369

Gene Structure 13098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTACAAAACTTCCTACCAAGTGGTGGTGGTGGTGTTATTGATACAATATCCGGCAGCAGTTCATACCAAAATATGGCATTTTTTGGCAGTGGTATAACATTGGCTTATTTACCACCAGGGTTGCAGGAACCAATAGTGAAGAAGTTATCGTTTGCAGGGGTTGATGTTAAATATGAAGAGATAATTGAAGCAACTTCAATTGACTCCAGCAAAGTCTTACGGTCCTGCACTGCTCAGGTACCTGAGATCAGGAGAATGCCAATTGAGGAACTTTGCCTTCAGAGTTTGGATCACCTTGAGGTCTCAGTGCCTATTCTCACAAAGTTTTCATCATTGAAAGAATTATACCTCTCTGGGAACCGTGTAAACAGAAGACAACATGAGAAAGTATTCGACAAATGTCCAACCTGGAGGCTATCTATCTTGGCAACAACTCTTTCACCCGGGAGACTTCAGATATCCATTTCTCAAAACTCTCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

162

Amino Acids

17.84

Weight (kDa)

7.71

Isoelectric Point (pI)

73.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	2 cut(s)	26, 76
AclWI	GGATC	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	266, 440
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	26, 76
AgsI	TTSAA	3 cut(s)	191, 201, 340
AjnI	CCWGG	2 cut(s)	118, 410
Alw26I	GTCTC	2 cut(s)	310, 445
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	2 cut(s)	447, 448
AsuHPI	GGTGA	2 cut(s)	287, 435
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	69
BciT130I	CCWGG	2 cut(s)	120, 412
BcnI	CCSGG	2 cut(s)	447, 448
BcoDI	GTCTC	2 cut(s)	310, 445
BfaI	CTAG	1 cut(s)	487
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	4 cut(s)	120, 412, 447, 448
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	132, 243, 362
BmrFI	CCNGG	4 cut(s)	120, 412, 447, 448
BoxI	GACNNNNGTC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	2 cut(s)	193, 433
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	447, 448
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	119, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 76
BseBI	CCWGG	2 cut(s)	120, 412
BseDI	CCNNGG	2 cut(s)	119, 446
BseLI	CCNNNNNNNGG	2 cut(s)	26, 76
BseMII	CTCAG	3 cut(s)	237, 251, 321
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	54, 447
BslI	CCNNNNNNNGG	2 cut(s)	26, 76
BsmAI	GTCTC	2 cut(s)	310, 445
BsmI	GAATGC	1 cut(s)	264
Bso31I	GGTCTC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	249, 292
BspCNI	CTCAG	3 cut(s)	238, 250, 320
BspLI	GGNNCC	3 cut(s)	132, 243, 362
BspPI	GGATC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	119, 446
BssMI	GATC	2 cut(s)	249, 292
Bst2UI	CCWGG	2 cut(s)	120, 412
Bst4CI	ACNGT	2 cut(s)	225, 365
Bst6I	CTCTTC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	237, 246, 307
BstKTI	GATC	2 cut(s)	252, 295
BstMAI	GTCTC	2 cut(s)	310, 445
BstMBI	GATC	2 cut(s)	249, 292
BstNI	CCWGG	2 cut(s)	120, 412
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	4 cut(s)	118, 410, 445, 446
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	382
BtsI	GCAGTG	2 cut(s)	97, 231
BtsIMutI	CAGTG	3 cut(s)	97, 231, 315
Cfr13I	GGNCC	1 cut(s)	225
Cfr9I	CCCGGG	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	2 cut(s)	107, 418
CviKI_1	RGCY	2 cut(s)	107, 418
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	237, 246, 307
DpnI	GATC	2 cut(s)	251, 294
DpnII	GATC	2 cut(s)	249, 292
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	266, 440
Eco88I	CYCGRG	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	118, 410
EcoRV	GATATC	1 cut(s)	462
FaeI	CATG	1 cut(s)	386
FaiI	YATR	6 cut(s)	67, 77, 98, 177, 349, 384
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	487
GluI	GCNGC	1 cut(s)	58
GsuI	CTGGAG	2 cut(s)	193, 433
HapII	CCGG	2 cut(s)	54, 447
Hin1II	CATG	1 cut(s)	386
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	54, 447
HphI	GGTGA	2 cut(s)	287, 435
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	285, 459
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	225, 365
HpyCH4V	TGCA	3 cut(s)	127, 158, 231
HpyF3I	CTNAG	3 cut(s)	237, 246, 307
Hsp92II	CATG	1 cut(s)	386
KpnI	GGTACC	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	249, 292
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	251, 294
MboI	GATC	2 cut(s)	249, 292
MboII	GAAGA	3 cut(s)	154, 191, 387
MfeI	CAATTG	2 cut(s)	201, 264
MluCI	AATT	4 cut(s)	186, 201, 264, 344
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	4 cut(s)	262, 295, 362, 408
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	54, 447
MspR9I	CCNGG	4 cut(s)	120, 412, 447, 448
MunI	CAATTG	2 cut(s)	201, 264
Mva1269I	GAATGC	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	120, 412
NciI	CCSGG	2 cut(s)	447, 448
NdeII	GATC	2 cut(s)	249, 292
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	3 cut(s)	132, 243, 362
PctI	GAATGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	392
PflMI	CCANNNNNTGG	2 cut(s)	26, 76
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	118, 410
PspGI	CCWGG	2 cut(s)	118, 410
PspN4I	GGNNCC	3 cut(s)	132, 243, 362
PspPI	GGNCC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	249, 292
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	4 cut(s)	120, 412, 447, 448
SetI	ASST	6 cut(s)	243, 247, 300, 306, 354, 413
SinI	GGWCC	1 cut(s)	225
SmaI	CCCGGG	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	4 cut(s)	186, 201, 264, 344
SspMI	CTAG	1 cut(s)	487
StyD4I	CCNGG	4 cut(s)	118, 410, 445, 446
TaaI	ACNGT	2 cut(s)	225, 365
TaqI	TCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	186, 201, 264, 344
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	97, 238, 315
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	3 cut(s)	54, 192, 321
TspMI	CCCGGG	1 cut(s)	446
TspRI	CASTG	3 cut(s)	97, 238, 315
Van91I	CCANNNNNTGG	2 cut(s)	26, 76
VpaK11BI	GGWCC	1 cut(s)	225
XmaI	CCCGGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.