Rroxscaffold_5G00368990

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
50804882 .. 50810376
5495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368990.1

Sequence Viewer

Length: 3513 bp
ATGTCTTGCTGGGTGATCACCGGAGAGAGACAGGCGGCACGAATAAGAAGTTTATACTTGAAGACAATCCTAAGGCAAGATGTTGGTTTTTTTGATAAAGAAGTTACCACCGGGGAAATAGTTGGAAGAATTTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGCGAGAAAGTAGGAAGTATTATCCAGTTAGTTGCAACATTCATAGGAGGCTTTGTCATAGCATTTGCTAAGGGATGGCGTCTCACCCTTGTCATGCTGACCTCTATTCCCCCTCTTGTTTTTTCCGGTGCTGTATTGAGCTTCACTGTAAAGAGGATGACTACTCGTGGACAAGCTGCTTATTCAGTCGGAGCAACTGTGGTAGAGCAGACAATTGGTTCAATCAGAACTGTTGCATCATTTACAGGTGAGAAGCAAGCCGTAACAAAGTACAACTACTCATTAGACAAAGCTTACAAGTCTGGAGTGCAAGAAGGTTTGGCATCAGGGTTTGGTCTTGGCGTGATTGTGCTTATTGTATTCTGCAGCTATGCTTTGGCTGTATGGTATGGCGGAAAAATGATACTTGAACAAGGATATAAAGCAGGAGATGTCATGAATGTGATATTTGCAGTATTAACTGGCTCCTTCTCTCTCGGACAAGCATCTCCATGCATAAGTGCATTTTCGGCTGGACAAGCTGCAGCTTACAAGATGTTTGAGACAATTAACAGAAGGCCGGAGATAGATGCTTCTGATACTAATGGGAAGCAATTAGAAGACATCCGAGGAGAAATAGAATTTAGGGATGTTTATTTTAGTTATCCTGCAAGAACAGATGAACAAATATTCCAAGGATTCTCACTCTCAATATCTAGTGGTGCAACTGCTGCTCTGGTAGGACAGAGCGGAAGTGGTAAATCGACTATAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATCGATGGGATTAATCTTAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGGCTTGTCAGCCAGGAACCTGTTTTGTTTACTTGCAGCATTAAAGATAATATTACTTATGGGAAGGATGGAGCAACTTTTGAAGAAATAAAGGCTGCCGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAATTACCTCAGGGACTAGATACAATGGTTGGGGAGCATGGAACTCAGCTATCTGGGGGCCAAAAGCAGAGAGTTGCCATAGCTAGAGCAATCCTTAAGAACCCAAGAATTCTGCTTTTAGATGAAGCTACAAGTGCTCTTGATGCAGAATCTGAGAGGGTTGTGCAAGAGGCATTGGACAGAGTTATGGTTAGCCGGACTACTGTGATTGTAGCCCACCGCTTGAGCACGGTGAGGAATGCTGATACGATTGCAGTTATAAATCGCGGAAAAATTGTTGAACAAGCACTGATTCTTTTCAACTCAGCAGGACCACATTCTGAACTAGTTAAGGTTCCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAACAAATTAGCAGTGTGTCAGAACAGAACTCTAAAAATATTCAGGAAATTAGGCCATTGTCAAACTCTAGAAGAGATAGTCCAAGACTTTCTCCCTTACAATCCATAAGTAGGGGATCATCTGGAAATACTAGTCCCCACTCATTCTCAATCTCACATGGTGCGCCTACTGTAATAGGTGTGCTTGAAATAGCACCAACTGAACCTCACATTCTAGCTGCATCATCAGAACTGCATCCAGAAGTCTCACTTAGCCGCCTAGCTTACCTGAACAAGCCAGAAATCCCAGTGCTAATTCTAGGTACCATAGCTGCAGCAATTAATGGGGTAATATTGCCTATTTTCGGGGTGTTAATATCCAGTATAATTAAGACCTTCTTTGAGCCACCTCATCAACTTCAAAAGGATTCCAAGTTTTGGTCATTAATCTTTATTCTTCTTGGAGTGGCGTCTCTCTTGGCATATCCATTGAAAGCATACTTTTTTGCTGTGGCTGGGGGCAAGTTAATAAGACGAGTTCGATCACTATGCTTTGAGAAGGTGATTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCACTCAAGTGGTGCAATTGGTGCAAGGCTTTCTGCAGATGCTGCCTCTCTCCGAGGGCTGGTTGGAGATGCTCTAGGATTGGCTGTTTTGAATGGATCAACTGCAATTGCTGGATTGGTGATTGCTTTTGTGGCAAATTGGCAACTTGCTCTTATAATCCTTATTCTCCTACCTCTACTAGGAATAAGTGGATATTTCCAGGTTCAGTTCCTAAAAGGATTAAGCGCTAGTGCAAAGAAAATGTATGAAGACGCAAGCCAAGTAGCCACAGATGCTGTGGGGAATATTAGAACAATTGCTTCATTTTGTGCTGAACAAAAGGTTGTTAAGTTGTACCACACAAAATGTGAAGGTCCTATCAAGGCAGGGATAAGACAAGGGATAGTCAGTGGGATAGGCTTTGGACTATCGTTCTTCTTGCTCTTCTCTGTATATGCATGTAGTTTCTATGCTGGTGCTCAACTTGTAGGAGCAGGCAAGACAACATTCCCTGATGTTTTTCGGGTTTTCTTTGCTCTAACTATGACAGCTATAGCATTGTCTCACCAGGGTTCCGTTGCCCCTGATTCCATTAAAGGAAAGAGCGCTGCCGCTTCTATATTTGCACTTCTTGACCAGAAATCAAAAATAGATTCTAGTGATGACTCTGGAACAACCATTGTAAATATGAAAGGAGAAATCCAATTTCGTCATGTTAGTTTCAAGTATCCTAATAGACCTAATGTGCCAATCTTCCGGGATCTTTGCTTGACCATTCACCACGGAAAGACTCTTGCTCTGGTGGGAGAAAGTGGAAGCGGAAAATCGACAGTGATCTCATTGCTTCAGAGATTTTATGACCCTGATTCAGGTCATATTACATTAGATAGTGTTGAAATGAAAACTTTACAGTTGAAGTGGCTGAGACAGCAAATGGGGTTGGTGAGCCAGGAGCCTTTATTGTTTAATGACACTATAAGAGCCAACATTGCATATGGAAAGGAAGGGATTGCAACCGAGGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGCCCACAAGTTCATTAGTAGTTTACAACAGGGTTATGATACAATAGTGGGCGAGCGAGGGGTTCAACTGTCTGGTGGACAGAAGCAAAGGGTGGCTATTGCAAGAGCGATAATGAAGGCACCAAAGATATTACTACTAGATGAAGCCACTAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTAGATCGAGTTATGGTGGATAGAACCACAGTTGTGGTTGCACATCGTTTATCCACGATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTAATTGCAGAGAAAGGAAAGCATGAATCTTTGATCAATATCAAGGGTGGCACTTATGCTTCTTTGGCAGCATTACATGCAAGTGCCTCATCTTAG

Protein Analysis

1170

Amino Acids

125.85

Weight (kDa)

8.87

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 2 - 212 4.7e-51 ABC transporter transmembrane region
ABC_tran PF00005 280 - 428 1.1e-33 ABC transporter
ABC_membrane PF00664 604 - 876 3.2e-61 ABC transporter transmembrane region
ABC_tran PF00005 945 - 1094 7.5e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1409, 1511, 2252
Acc65I GGTACC 1 cut(s) 1820
AccB1I GGYRCC 2 cut(s) 1820, 3247
AccB7I CCANNNNNTGG 2 cut(s) 950, 1935
AccBSI CCGCTC 1 cut(s) 894
AccII CGCG 1 cut(s) 1416
AciI CCGC 9 cut(s) 35, 558, 894, 1116, 1369, 1416, 1774, 2688, 2895
AclWI GGATC 4 cut(s) 1010, 1642, 2200, 2844
AcsI RAATTY 4 cut(s) 129, 785, 1139, 1257
AcuI CTGAAG 1 cut(s) 2906
AcyI GRCGYC 2 cut(s) 244, 1967
AdeI CACNNNGTG 1 cut(s) 1679
AfaI GTAC 3 cut(s) 437, 1822, 2432
AfeI AGCGCT 2 cut(s) 2323, 2683
AfiI CCNNNNNNNGG 7 cut(s) 950, 1629, 1862, 1935, 2155, 2276, 2945
AflII CTTAAG 1 cut(s) 1244
AhlI ACTAGT 3 cut(s) 1474, 1649, 3278
AjnI CCWGG 4 cut(s) 1029, 2295, 2643, 3024
AleI CACNNNNGTG 2 cut(s) 2103, 3353
AloI GAACNNNNNNTCC 2 cut(s) 819, 851
Alw21I GWGCWC 6 cut(s) 150, 1288, 1379, 2100, 2557, 3286
Alw26I GTCTC 7 cut(s) 22, 251, 701, 1768, 1974, 2643, 2995
AlwI GGATC 4 cut(s) 1010, 1642, 2200, 2844
AlwNI CAGNNNCTG 3 cut(s) 1301, 2138, 2372
Aor51HI AGCGCT 2 cut(s) 2323, 2683
AoxI GGCC 4 cut(s) 159, 722, 1207, 1571
ApoI RAATTY 4 cut(s) 129, 785, 1139, 1257
AseI ATTAAT 3 cut(s) 975, 1839, 1943
Asp700I GAANNNNTTC 1 cut(s) 130
Asp718I GGTACC 1 cut(s) 1820
AspLEI GCGC 3 cut(s) 1684, 2324, 2684
AspS9I GGNCC 3 cut(s) 1207, 1460, 2450
AsuC2I CCSGG 2 cut(s) 112, 2834
AvaII GGWCC 2 cut(s) 1460, 2450
AxyI CCTNAGG 2 cut(s) 71, 1158
BaeI ACNNNNGTAYC 4 cut(s) 1161, 1194, 3159, 3192
BanI GGYRCC 2 cut(s) 1820, 3247
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 3 cut(s) 68, 771, 2352
Bbv12I GWGCWC 6 cut(s) 150, 1288, 1379, 2100, 2557, 3286
BccI CCATC 4 cut(s) 234, 962, 1079, 1484
BceAI ACGGC 1 cut(s) 410
BcgI CGANNNNNNTGC 2 cut(s) 2028, 2062
BciT130I CCWGG 4 cut(s) 1031, 2297, 2645, 3026
BciVI GTATCC 1 cut(s) 2814
BclI TGATCA 2 cut(s) 15, 3450
BcnI CCSGG 2 cut(s) 112, 2834
BcoDI GTCTC 7 cut(s) 22, 251, 701, 1768, 1974, 2643, 2995
BcuI ACTAGT 3 cut(s) 1474, 1649, 3278
BfmI CTRYAG 6 cut(s) 529, 687, 1830, 2130, 2628, 3111
BfoI RGCGCY 2 cut(s) 2325, 2685
BfrI CTTAAG 1 cut(s) 1244
BfuI GTATCC 1 cut(s) 2814
BlpI GCTNAGC 2 cut(s) 1119, 2094
Bme1390I CCNGG 6 cut(s) 112, 1031, 2297, 2645, 2834, 3026
Bme18I GGWCC 2 cut(s) 1460, 2450
BmgT120I GGNCC 3 cut(s) 1207, 1460, 2450
BmiI GGNNCC 8 cut(s) 631, 1035, 1208, 1485, 1822, 2650, 3030, 3249
BmrFI CCNGG 6 cut(s) 112, 1031, 2297, 2645, 2834, 3026
BmrI ACTGGG 1 cut(s) 1799
BmuI ACTGGG 1 cut(s) 1799
BpiI GAAGAC 3 cut(s) 68, 771, 2352
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 2 cut(s) 1119, 2094
BpuEI CTTGAG 2 cut(s) 1393, 2086
BpuMI CCSGG 2 cut(s) 112, 2834
Bsa29I ATCGAT 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 3455
BsaHI GRCGYC 2 cut(s) 244, 1967
BsaJI CCNNGG 8 cut(s) 111, 162, 772, 838, 2149, 2644, 2857, 3093
BsaWI WCCGGW 2 cut(s) 20, 290
BsaXI ACNNNNNCTCC 4 cut(s) 204, 234, 348, 378
Bsc4I CCNNNNNNNGG 7 cut(s) 950, 1629, 1862, 1935, 2155, 2276, 2945
Bse1I ACTGG 4 cut(s) 190, 631, 1805, 1878
Bse21I CCTNAGG 2 cut(s) 71, 1158
Bse3DI GCAATG 2 cut(s) 2915, 3063
Bse8I GATNNNNATC 1 cut(s) 3455
BseBI CCWGG 4 cut(s) 1031, 2297, 2645, 3026
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 8 cut(s) 111, 162, 772, 838, 2149, 2644, 2857, 3093
BseGI GGATG 6 cut(s) 245, 327, 768, 799, 1090, 1753
BseJI GATNNNNATC 1 cut(s) 3455
BseLI CCNNNNNNNGG 7 cut(s) 950, 1629, 1862, 1935, 2155, 2276, 2945
BseMI GCAATG 2 cut(s) 2915, 3063
BseMII CTCAG 7 cut(s) 1110, 1172, 1208, 1293, 1467, 2085, 2990
BseNI ACTGG 4 cut(s) 190, 631, 1805, 1878
BseRI GAGGAG 1 cut(s) 789
BseYI CCCAGC 2 cut(s) 9, 2012
BsgI GTGCAG 1 cut(s) 3408
Bsh1236I CGCG 1 cut(s) 1416
BshFI GGCC 4 cut(s) 161, 724, 1209, 1573
BshNI GGYRCC 2 cut(s) 1820, 3247
BshVI ATCGAT 1 cut(s) 966
BsiHKAI GWGCWC 6 cut(s) 150, 1288, 1379, 2100, 2557, 3286
BsiSI CCGG 6 cut(s) 21, 111, 291, 725, 1345, 2833
BslFI GGGAC 2 cut(s) 1176, 1638
BslI CCNNNNNNNGG 7 cut(s) 950, 1629, 1862, 1935, 2155, 2276, 2945
BsmAI GTCTC 7 cut(s) 22, 251, 701, 1768, 1974, 2643, 2995
BsmBI CGTCTC 2 cut(s) 251, 1974
BsmFI GGGAC 2 cut(s) 1176, 1638
BsmI GAATGC 1 cut(s) 1393
BsnI GGCC 4 cut(s) 161, 724, 1209, 1573
Bsp1286I GDGCHC 6 cut(s) 150, 1288, 1379, 2100, 2557, 3286
Bsp143I GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
Bsp1720I GCTNAGC 2 cut(s) 1119, 2094
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 9 cut(s) 35, 558, 894, 1116, 1369, 1416, 1774, 2688, 2895
BspANI GGCC 4 cut(s) 161, 724, 1209, 1573
BspCNI CTCAG 7 cut(s) 1111, 1171, 1207, 1294, 1466, 2086, 2991
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 1 cut(s) 1416
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 8 cut(s) 631, 1035, 1208, 1485, 1822, 2650, 3030, 3249
BspMAI CTGCAG 5 cut(s) 533, 691, 1834, 2134, 3115
BspPI GGATC 4 cut(s) 1010, 1642, 2200, 2844
BspQI GCTCTTC 1 cut(s) 2525
BspT107I GGYRCC 2 cut(s) 1820, 3247
BspTI CTTAAG 1 cut(s) 1244
BsrBI CCGCTC 1 cut(s) 894
BsrDI GCAATG 2 cut(s) 2915, 3063
BsrI ACTGG 4 cut(s) 190, 631, 1805, 1878
BssECI CCNNGG 8 cut(s) 111, 162, 772, 838, 2149, 2644, 2857, 3093
BssMI GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
BssNI GRCGYC 2 cut(s) 244, 1967
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 2 cut(s) 162, 838
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 4 cut(s) 1031, 2297, 2645, 3026
Bst6I CTCTTC 2 cut(s) 1585, 2525
BstACI GRCGYC 2 cut(s) 244, 1967
BstAFI CTTAAG 1 cut(s) 1244
BstAPI GCANNNNNTGC 4 cut(s) 875, 2117, 2138, 3494
BstC8I GCNNGC 6 cut(s) 423, 1125, 1505, 2353, 2572, 3182
BstDSI CCRYGG 2 cut(s) 162, 2857
BstENI CCTNNNNNAGG 2 cut(s) 2274, 2943
BstF5I GGATG 6 cut(s) 245, 327, 768, 799, 1090, 1753
BstFNI CGCG 1 cut(s) 1416
BstH2I RGCGCY 2 cut(s) 2325, 2685
BstHHI GCGC 3 cut(s) 1684, 2324, 2684
BstKTI GATC 9 cut(s) 18, 1005, 1637, 2042, 2195, 2839, 2913, 3328, 3453
BstMAI GTCTC 7 cut(s) 22, 251, 701, 1768, 1974, 2643, 2995
BstMBI GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
BstNI CCWGG 4 cut(s) 1031, 2297, 2645, 3026
BstNSI RCATGY 2 cut(s) 2538, 3497
BstSCI CCNGG 6 cut(s) 110, 1029, 2295, 2643, 2832, 3024
BstSFI CTRYAG 6 cut(s) 529, 687, 1830, 2130, 2628, 3111
BstUI CGCG 1 cut(s) 1416
BstV2I GAAGAC 3 cut(s) 68, 771, 2352
BstX2I RGATCY 1 cut(s) 2836
BstXI CCANNNNNNTGG 1 cut(s) 3355
BstYI RGATCY 1 cut(s) 2836
Bsu15I ATCGAT 1 cut(s) 966
Bsu36I CCTNAGG 2 cut(s) 71, 1158
BsuI GTATCC 1 cut(s) 2814
BsuRI GGCC 4 cut(s) 161, 724, 1209, 1573
BsuTUI ATCGAT 1 cut(s) 966
BtgI CCRYGG 2 cut(s) 162, 2857
BtsCI GGATG 6 cut(s) 245, 327, 768, 799, 1090, 1753
BtsI GCAGTG 2 cut(s) 1537, 3408
BtsIMutI CAGTG 7 cut(s) 309, 1436, 1537, 1812, 2491, 2913, 3408
Cac8I GCNNGC 6 cut(s) 423, 1125, 1505, 2353, 2572, 3182
CaiI CAGNNNCTG 3 cut(s) 1301, 2138, 2372
CciI TCATGA 1 cut(s) 600
CfoI GCGC 3 cut(s) 1684, 2324, 2684
Cfr13I GGNCC 3 cut(s) 1207, 1460, 2450
ClaI ATCGAT 1 cut(s) 966
CseI GACGC 3 cut(s) 233, 1956, 2357
Csp6I GTAC 3 cut(s) 436, 1821, 2431
CviQI GTAC 3 cut(s) 436, 1821, 2431
DpnI GATC 9 cut(s) 17, 1004, 1636, 2041, 2194, 2838, 2912, 3327, 3452
DpnII GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
DraIII CACNNNGTG 1 cut(s) 1679
Eam1104I CTCTTC 2 cut(s) 1585, 2525
EarI CTCTTC 2 cut(s) 1585, 2525
EciI GGCGGA 1 cut(s) 573
Eco130I CCWWGG 2 cut(s) 162, 838
Eco47I GGWCC 2 cut(s) 1460, 2450
Eco47III AGCGCT 2 cut(s) 2323, 2683
Eco57I CTGAAG 1 cut(s) 2906
Eco81I CCTNAGG 2 cut(s) 71, 1158
EcoNI CCTNNNNNAGG 2 cut(s) 2274, 2943
EcoO109I RGGNCCY 1 cut(s) 2450
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 4 cut(s) 1029, 2295, 2643, 3024
EcoT14I CCWWGG 2 cut(s) 162, 838
EcoT22I ATGCAT 2 cut(s) 662, 2536
ErhI CCWWGG 2 cut(s) 162, 838
Esp3I CGTCTC 2 cut(s) 251, 1974
FalI AAGNNNNNCTT 4 cut(s) 1752, 1784, 1880, 1912
FaqI GGGAC 2 cut(s) 1176, 1638
FauNDI CATATG 1 cut(s) 3070
FbaI TGATCA 2 cut(s) 15, 3450
FokI GGATG 6 cut(s) 252, 334, 755, 806, 1097, 1740
GlaI GCGC 3 cut(s) 1683, 2323, 2683
GsaI CCCAGC 2 cut(s) 13, 2016
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 2 cut(s) 2325, 2685
HaeIII GGCC 4 cut(s) 161, 724, 1209, 1573
HapII CCGG 6 cut(s) 21, 111, 291, 725, 1345, 2833
HgaI GACGC 3 cut(s) 233, 1956, 2357
HhaI GCGC 3 cut(s) 1684, 2324, 2684
Hin1I GRCGYC 2 cut(s) 244, 1967
Hin6I GCGC 3 cut(s) 1682, 2322, 2682
HinP1I GCGC 3 cut(s) 1682, 2322, 2682
HindIII AAGCTT 1 cut(s) 456
HpaII CCGG 6 cut(s) 21, 111, 291, 725, 1345, 2833
Hpy166II GTNNAC 4 cut(s) 335, 1047, 3152, 3206
Hpy8I GTNNAC 4 cut(s) 335, 1047, 3152, 3206
HpyAV CCTTC 9 cut(s) 473, 643, 714, 1075, 1903, 2050, 2441, 3074, 3238
Hsp92I GRCGYC 2 cut(s) 244, 1967
HspAI GCGC 3 cut(s) 1682, 2322, 2682
KpnI GGTACC 1 cut(s) 1824
Ksp22I TGATCA 2 cut(s) 15, 3450
Kzo9I GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
LguI GCTCTTC 1 cut(s) 2525
LmnI GCTCC 7 cut(s) 356, 635, 1088, 1183, 1493, 2567, 3028
MaeIII GTNAC 2 cut(s) 103, 427
MalI GATC 9 cut(s) 17, 1004, 1636, 2041, 2194, 2838, 2912, 3327, 3452
MbiI CCGCTC 1 cut(s) 894
MboI GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
MfeI CAATTG 4 cut(s) 378, 2112, 2202, 2391
MflI RGATCY 1 cut(s) 2836
MhlI GDGCHC 6 cut(s) 150, 1288, 1379, 2100, 2557, 3286
MlyI GAGTC 2 cut(s) 2735, 2860
MmeI TCCRAC 3 cut(s) 103, 334, 2140
Mph1103I ATGCAT 2 cut(s) 662, 2536
MroXI GAANNNNTTC 1 cut(s) 130
MslI CAYNNNNRTG 5 cut(s) 605, 655, 2103, 3353, 3498
MspA1I CMGCKG 2 cut(s) 994, 1118
MspCI CTTAAG 1 cut(s) 1244
MspI CCGG 6 cut(s) 21, 111, 291, 725, 1345, 2833
MspR9I CCNGG 6 cut(s) 112, 1031, 2297, 2645, 2834, 3026
MunI CAATTG 4 cut(s) 378, 2112, 2202, 2391
Mva1269I GAATGC 1 cut(s) 1393
MvaI CCWGG 4 cut(s) 1031, 2297, 2645, 3026
MvnI CGCG 1 cut(s) 1416
NciI CCSGG 2 cut(s) 112, 2834
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 3070
NdeII GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
NlaIV GGNNCC 8 cut(s) 631, 1035, 1208, 1485, 1822, 2650, 3030, 3249
NsiI ATGCAT 2 cut(s) 662, 2536
NspI RCATGY 2 cut(s) 2538, 3497
OliI CACNNNNGTG 2 cut(s) 2103, 3353
PagI TCATGA 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 2525
PctI GAATGC 1 cut(s) 1393
PdmI GAANNNNTTC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 950, 1935
PfoI TCCNGGA 1 cut(s) 2832
PleI GAGTC 2 cut(s) 2735, 2860
PpsI GAGTC 2 cut(s) 2735, 2860
PpuMI RGGWCCY 1 cut(s) 2450
PshBI ATTAAT 3 cut(s) 975, 1839, 1943
PsiI TTATAA 3 cut(s) 1409, 1511, 2252
Psp5II RGGWCCY 1 cut(s) 2450
Psp6I CCWGG 4 cut(s) 1029, 2295, 2643, 3024
PspFI CCCAGC 2 cut(s) 9, 2012
PspGI CCWGG 4 cut(s) 1029, 2295, 2643, 3024
PspN4I GGNNCC 8 cut(s) 631, 1035, 1208, 1485, 1822, 2650, 3030, 3249
PspPI GGNCC 3 cut(s) 1207, 1460, 2450
PspPPI RGGWCCY 1 cut(s) 2450
PstI CTGCAG 5 cut(s) 533, 691, 1834, 2134, 3115
PstNI CAGNNNCTG 3 cut(s) 1301, 2138, 2372
PsuI RGATCY 1 cut(s) 2836
PvuII CAGCTG 1 cut(s) 994
RsaI GTAC 3 cut(s) 437, 1822, 2432
RsaNI GTAC 3 cut(s) 436, 1821, 2431
RseI CAYNNNNRTG 5 cut(s) 605, 655, 2103, 3353, 3498
SapI GCTCTTC 1 cut(s) 2525
Sau3AI GATC 9 cut(s) 15, 1002, 1634, 2039, 2192, 2836, 2910, 3325, 3450
Sau96I GGNCC 3 cut(s) 1207, 1460, 2450
SchI GAGTC 2 cut(s) 2735, 2860
ScrFI CCNGG 6 cut(s) 112, 1031, 2297, 2645, 2834, 3026
SduI GDGCHC 6 cut(s) 150, 1288, 1379, 2100, 2557, 3286
SfcI CTRYAG 6 cut(s) 529, 687, 1830, 2130, 2628, 3111
SinI GGWCC 2 cut(s) 1460, 2450
SmiMI CAYNNNNRTG 5 cut(s) 605, 655, 2103, 3353, 3498
SmlI CTYRAG 3 cut(s) 1244, 1372, 2101
SmoI CTYRAG 3 cut(s) 1244, 1372, 2101
SpeI ACTAGT 3 cut(s) 1474, 1649, 3278
SsiI CCGC 9 cut(s) 35, 558, 894, 1116, 1369, 1416, 1774, 2688, 2895
SspI AATATT 5 cut(s) 834, 1069, 1558, 1851, 2383
StyD4I CCNGG 6 cut(s) 110, 1029, 2295, 2643, 2832, 3024
StyI CCWWGG 2 cut(s) 162, 838
TaqI TCGA 5 cut(s) 908, 966, 2038, 2903, 3328
TatI WGTACW 1 cut(s) 435
TauI GCSGC 4 cut(s) 38, 1118, 1776, 2690
TscAI CASTG 7 cut(s) 316, 1443, 1537, 1812, 2491, 2913, 3408
TspGWI ACGGA 2 cut(s) 2641, 2874
TspRI CASTG 7 cut(s) 316, 1443, 1537, 1812, 2491, 2913, 3408
Van91I CCANNNNNTGG 2 cut(s) 950, 1935
Vha464I CTTAAG 1 cut(s) 1244
VpaK11BI GGWCC 2 cut(s) 1460, 2450
VspI ATTAAT 3 cut(s) 975, 1839, 1943
XagI CCTNNNNNAGG 2 cut(s) 2274, 2943
XapI RAATTY 4 cut(s) 129, 785, 1139, 1257
XbaI TCTAGA 1 cut(s) 1586
XceI RCATGY 2 cut(s) 2538, 3497
XcmI CCANNNNNNNNNTGG 1 cut(s) 2371
XmnI GAANNNNTTC 1 cut(s) 130
Zsp2I ATGCAT 2 cut(s) 662, 2536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.