Rroxscaffold_6G00427790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000116
Physical Location & Seq
Reverse (-)
48365586 .. 48366108
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427790.1

Sequence Viewer

Length: 318 bp
ATGTGTGATCAAACATTGCTTGCTGTGGCTAATATCTTTTTGAGAAGTTCTCTGTGTATGAACTGTGAAGTAAATAGAAGAAAATCGGAAGGTTATCTACTGATGCATTATTACAATGATCCTCCAAACTTAACGGTTACTGAAGTTTTCATAGATATAGTGTACAAATCCTCATCCCAATGGGGTCCAAGATTATTTGAAGCCGCTGAAACCTTCTACTTGTGTGCAGGGGTCGATGTTAAATATGAAGAGATAATTGAAGCAACTTCAATTGACTCCAGCAAAGTCTTACGGTCCTGCACAGCTCAGGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.96

Weight (kDa)

4.84

Isoelectric Point (pI)

74.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 3 cut(s) 200, 260, 270
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
AlwI GGATC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 185, 294
AvaII GGWCC 2 cut(s) 185, 294
BarI GAAGNNNNNNTAC 2 cut(s) 81, 113
BclI TGATCA 1 cut(s) 7
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme18I GGWCC 2 cut(s) 185, 294
BmgT120I GGNCC 2 cut(s) 185, 294
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 14
BseGI GGATG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 14
BsgI GTGCAG 2 cut(s) 246, 283
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 2 cut(s) 7, 118
BspACI CCGC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 162
BssMI GATC 2 cut(s) 7, 118
Bst4CI ACNGT 3 cut(s) 65, 136, 294
Bst6I CTCTTC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 2 cut(s) 10, 121
BstMBI GATC 2 cut(s) 7, 118
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 185, 294
Csp6I GTAC 1 cut(s) 163
CviJI RGCY 3 cut(s) 29, 203, 305
CviKI_1 RGCY 3 cut(s) 29, 203, 305
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 9, 120
DpnII GATC 2 cut(s) 7, 118
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 185, 294
Eco57I CTGAAG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 108
FaiI YATR 4 cut(s) 59, 152, 158, 246
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 262
HinfI GANTC 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 83, 223
HpyCH4III ACNGT 3 cut(s) 65, 136, 294
HpyCH4V TGCA 3 cut(s) 106, 227, 300
HpyF3I CTNAG 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 118
LpnPI CCDG 4 cut(s) 213, 292, 293, 310
LweI GCATC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 9, 120
MboI GATC 2 cut(s) 7, 118
MboII GAAGA 2 cut(s) 90, 260
MfeI CAATTG 1 cut(s) 270
MluCI AATT 2 cut(s) 255, 270
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 2 cut(s) 132, 181
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 2 cut(s) 131, 240
MslI CAYNNNNRTG 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 270
NdeII GATC 2 cut(s) 7, 118
NlaIV GGNNCC 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 108
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 185, 294
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 2 cut(s) 131, 240
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 7, 118
Sau96I GGNCC 2 cut(s) 185, 294
SchI GAGTC 1 cut(s) 269
SetI ASST 4 cut(s) 94, 215, 307, 312
SfaNI GCATC 1 cut(s) 93
SgeI CNNG 6 cut(s) 32, 201, 232, 240, 291, 309
SinI GGWCC 2 cut(s) 185, 294
SmiMI CAYNNNNRTG 1 cut(s) 178
Sse9I AATT 2 cut(s) 255, 270
SsiI CCGC 1 cut(s) 204
TaaI ACNGT 3 cut(s) 65, 136, 294
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 255, 270
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 131, 240
Tru9I TTAA 2 cut(s) 131, 240
TspDTI ATGAA 3 cut(s) 74, 139, 261
VpaK11BI GGWCC 2 cut(s) 185, 294
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.