Rh4CG297400

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
55678613 .. 55683902
5290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG297400.1

Sequence Viewer

Length: 3906 bp
ATGGGTGATCAGGAGAATCCTTTGGATGGAGATCATGTGATCAGAGAGGAAGCTGCCGCGTCGAAAAGTCAATCAACAGTGCCGGAATCCCAGAACGGACCGGAAAATACTAGTAACAAGGAAGATGCAAGCAAGAGCAAGGAGGGTGGCACCAAGGCAGTACCCTTTTTCAAGCTCTTCTCATTTGCTGATTCCATGGATTACTTGTTAATGTCGGTTGGTACGATTAGCGCAATTGGAAATGGAATGTGTTTGCCTCTAATGACCGTAATCATGGGAGATGTGATTAATTCTTTTGGAGAATCTGGGAATTCCAATAAAGTGGTTGATACAGTGTCTAAGGTGGCTTTAAAGTTCGTCTACTTGGCTTTGGGAGCTGCAGCTGCTTCATTTCTACAGATGTCTTGTTGGATGATCACCGGAGAGAGACAGGCTGCGAGAATAAGATTTTTATACTTGAAAACAATATTGAGGCAAGACGTAGGCTTTTTTGATAAAGAAACTAGCACTGGAGAAGTTATTGGGAGGATGTCAGGTGATACTGTGCTCATTCAGGAGGCCATGGGAGAGAAGGTAGGAACTTGTATCCAGTTATTTGCAACATTCTTTGGAGGCTTTATCATAGCCTTTGTTAAGGGATGGCTTCTTACCCTGGTCATGCTTTCTTCTATCCCCGCTCTTGTCATCTCTGGTGCTGTCATGAGCATCATCGTATCAAAGTTGGCATCTCGAGGACAAGCTGCTTATTCAGCAGCAGCATCTGTGGTTGAGCAGACAATTGGTTCAATAAGAACTGTTGCATCATTTACAGGGGAGAAACAAGCTATAACTAAGTACAACAGCTCTATAAATAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTGGCATCTGGATTGGGTATCGGTTCAGTTATGCTTATCATATTCTGTAGTTATGCTTTGGCTATATGGTATGGCGGAAAAATGATACTTGAAAAGGGATATAAAGGAGGAGATGTCATAAATGTAGTTTTTGCTGTGTTGACTGGCTCCTTCTCTCTTGGGCAGACATCTCCATGCTTGGCTGCATTTGCTTCTGGGAAAGCTGCAGCTTATAAGATGTTTGAGACAATTAGCAGAAACCCAGAGATAGATGCTTCTGATACTAAAGGGAAGCAATTACAAGATATTAGAGGAGACATAGAACTGAGGGATGTTCATTTTAGTTATCCTGCAAGACCAGATGAACATATATTCCGTGGATTTTCTCTCACAATACCTAGTGGTGCAACTGCTGCTTTGGTAGGAGAGAGCGGAAGTGGTAAATCGACTGTAATCAGTTTGATCGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATTGATGGTGTCAATCTCAAACAGTTCCAGCTGAAATGGATCAGGCAGAAAATAGGTCTTGTCAGCCAGGAACCTGTATTGTTTACTTGCAGCATTAGAGATAATATTGGCTATGGGAAGGATGGTGCAACTACTGAAGAGATAAGGGCTGCTGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAACTTCCTCAGGGACTAGATACAATGGTGGGTGAGCATGGAACTCAACTATCTGGGGGCCAAAAGCAGAGAGTTGCTATAGCTCGAGCAATTCTAAAAAACCCAAGAATTCTACTTCTAGATGAAGCCACAAGTGCTCTTGACGCAGAATCTGAGAGAGTTGTGCAGGAGGCACTGGATAGAATTATGGTTAACCGGACTACTGTCATAGTAGCCCATCGCTTGAGCACAGTAAGGAATGCTGATACCATTGCTGTAATACATCGAGGAACAATTGTTGAACAAGGACCACATTCCGAGCTAGTTAAGGATCCTGAGGGAGCATATAGCCAGCTTATAAGACTACAAGAAACCAGAACTGTGTCAGAACAGACTGGTGTAAATGATCAGGATAGGCCAGATATTTCTTCCGATTCTCGGAGACAGTCAAGTCAAAGATTTTCTTTATTAAGATCCATAAGCCGTGGATCATCTGGAAGAGCAAATAGTATTCATCATTCATTCTCAATCTCATTTGGTGGTGCACCTGCTGCAATCGGCATCCTTGAAACAAATCCTGCTGAACCTGATACTCATGCTCCAGCATCATCAAAAGGGCATCCAGAAGTCTCACTTAGCCGCCTAGCTGCCCTGAACAAGCCAGAGATCCCAGTGCTGCTTCTTGGTACTTTAGCTGCAGCAGCCAATGGGGCGATCTTACCTGTTTTTGGGATACTAATATCCAGTGTAATCAAGACCTTCTTTGAGCCACCTGATAAACTGAGTAAGGATTCAAAGTTTTGGGCATTAATCTTTGTTGTTCTTGGAGTTGCATCGTTCTTGGCACAATCATCAAGAGCATATCTTTTTGGTGTGGCTGGATGTAAGTTGATAAGAAGAGTTCGATCAAAGTGCTTTGAGAAGGTGGTTTACATGGACATAGGTTGGTTTGATGAGTCTGATCATTCAAGTGGTGCAATTGGGGCAAGGCTTTCTACAGATGCGGCTTCTCTAAGAGGGTTGGTTGGAGATGCTCTAGGTTTGTTGGTTCAGAATATAGCAACTGCAGTTGCCGGCCTAGTTATTGCTTTCGTAGCAAATTGGCAATTGGCTCTTATAATCCTTGTGCTGCTGCCAATGTTAGGAGTAAGTGGATATTTTCAAGTCAAGTTAATGAAAGGGTTCAGTGCAGATGCAAAGAAAATGTACGAGGACGCAAGCCAAGTAGCCAATGATGCTGTTGGGAGTATTAGAACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATGGAACTGTACCAGGAAAAATGCGAAGGTCCTATTAAAAGTGGGATAAGACAAGGCTTAGTTAGCGGAATTGGTTTTGGGCTATCGTTCTTTTTGCTATTTTCTGTGTATGCCTGCAGTTTCTATGCTGGAGCCCGACTTGTTGCAGCAGGCAAGACAGAATTTTCTGACGTGTTTCGGGTTTTCTTTGCTCTCACTATGACAGCGGTTGGAATATCTCAGTCGAACTCCCTATCCCCTGATGTAAGTAAAGGAAAGAGTTCTGCTTCTTCCATATTTGCAATTCTTGACGGCAAGTCAAAAATAGACTCTAGTGACGACTCTGGAACTACAATAGAAAATGTGAAGGGAGATATTGAACTACGCCATGTCAGTTTCAAGTATCCAACTAGACCCAACGTGCCAATCTTTCAGGATCTTTGCTTGACCATTCATCATGGCAAGACTGTTGCTCTGGTTGGAGAAAGTGGTAGTGGGAAGTCGACAGTGATCTCATTGTTGCAGAGATTTTATGACCCTGATTCAGGTCACATTACATTAGATGGAATCAAAATCCAAAATCTACAACTGAAGTGGTTGAGACAGCAAATGGGGCTGGTGAGCCAAGAGCCTCTGCTGTTTAATGACACTATCCGAGCCAACATTGCATATGGAAAGGATGGGAATGCAACCGAAGGTGAAATTATAGCTGCAGCAGAATTGGCAAATGCCCACAAGTTCATTAGTAGCTTACAACAGGGTTACGATACAGTAGTAGGAGAACGGGGGGTCCAATTGTCAGGTGGACAGAAGCAAAGGGTGGCAATTGCACGAGCTATTATGAAGGCGCCAAAGATATTACTCCTAGATGAGGCTACCAGTGCTCTTGATGCTGAATCCGAACGAGTCGTTCAAGATGCATTGGACAGAGTTATGGTGGATCGAACAACAGTGGTAGTTGCCCATCGGTTGTCGACAATCAGAAGTGCAGATTTGATAGCAGTGGTAAAGAATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTGATCAATATCCAGGATGGCACTTACGCTTCTCTGGTAGCTTTACATGCAAGTGCCTCTTCTTAG

Protein Analysis

1301

Amino Acids

139.29

Weight (kDa)

7.06

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 73 - 345 7.3e-60 ABC transporter transmembrane region
ABC_tran PF00005 413 - 561 4.1e-34 ABC transporter
ABC_membrane PF00664 735 - 1008 4.8e-62 ABC transporter transmembrane region
ABC_tran PF00005 1076 - 1225 1.3e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1095, 1886, 2645
AarI CACCTGC 1 cut(s) 2083
AasI GACNNNNNNGTC 1 cut(s) 1977
Acc36I ACCTGC 1 cut(s) 2083
AccB1I GGYRCC 2 cut(s) 149, 3640
AccB7I CCANNNNNTGG 1 cut(s) 1349
AccBSI CCGCTC 2 cut(s) 677, 1293
AccI GTMKAC 3 cut(s) 360, 3296, 3767
AccII CGCG 1 cut(s) 59
AciI CCGC 8 cut(s) 57, 675, 957, 1293, 2167, 2531, 2880, 3020
AclWI GGATC 8 cut(s) 1409, 1853, 1866, 1995, 2023, 2188, 3237, 3741
AcsI RAATTY 4 cut(s) 310, 1538, 1656, 2975
AcuI CTGAAG 3 cut(s) 1518, 2823, 3404
AcyI GRCGYC 1 cut(s) 3641
AfaI GTAC 6 cut(s) 162, 223, 836, 2215, 2735, 2825
AfiI CCNNNNNNNGG 7 cut(s) 26, 1349, 1965, 2255, 2669, 3338, 3664
AflIII ACRYGT 1 cut(s) 2985
AhdI GACNNNNNGTC 1 cut(s) 3109
AhlI ACTAGT 1 cut(s) 110
AjiI CACGTC 1 cut(s) 2986
AjnI CCWGG 4 cut(s) 651, 1428, 2826, 3852
AloI GAACNNNNNNTCC 6 cut(s) 1218, 1250, 3032, 3064, 3567, 3599
Alw21I GWGCWC 5 cut(s) 549, 1687, 1778, 2074, 3679
Alw26I GTCTC 7 cut(s) 421, 1100, 1170, 1963, 2161, 3388, 3830
Alw44I GTGCAC 1 cut(s) 2070
AlwI GGATC 8 cut(s) 1409, 1853, 1866, 1995, 2023, 2188, 3237, 3741
AlwNI CAGNNNCTG 2 cut(s) 761, 1700
Ama87I CYCGRG 2 cut(s) 729, 1632
AoxI GGCC 4 cut(s) 558, 1606, 1943, 2602
ApaLI GTGCAC 1 cut(s) 2070
ApoI RAATTY 4 cut(s) 310, 1538, 1656, 2975
AseI ATTAAT 2 cut(s) 288, 2336
Asp700I GAANNNNTTC 2 cut(s) 2708, 3073
AspLEI GCGC 2 cut(s) 233, 3643
AspS9I GGNCC 5 cut(s) 98, 1606, 1835, 2843, 3583
AsuHPI GGTGA 8 cut(s) 17, 409, 548, 1364, 1592, 2824, 3424, 3503
AvaI CYCGRG 2 cut(s) 729, 1632
AvaII GGWCC 4 cut(s) 98, 1835, 2843, 3583
AxyI CCTNAGG 2 cut(s) 1557, 1863
BaeGI GKGCMC 1 cut(s) 2074
BaeI ACNNNNGTAYC 4 cut(s) 1560, 1593, 3552, 3585
BamHI GGATCC 1 cut(s) 1858
BanI GGYRCC 2 cut(s) 149, 3640
BanII GRGCYC 1 cut(s) 2950
BarI GAAGNNNNNNTAC 2 cut(s) 2441, 2473
BauI CACGAG 1 cut(s) 3624
Bbv12I GWGCWC 5 cut(s) 549, 1687, 1778, 2074, 3679
BceAI ACGGC 2 cut(s) 1995, 3121
BcgI CGANNNNNNTGC 2 cut(s) 2421, 2455
BciT130I CCWGG 4 cut(s) 653, 1430, 2828, 3854
BciVI GTATCC 3 cut(s) 596, 2253, 3207
BclI TGATCA 6 cut(s) 7, 39, 414, 1933, 2488, 3843
BcoDI GTCTC 7 cut(s) 421, 1100, 1170, 1963, 2161, 3388, 3830
BcuI ACTAGT 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 3644
BfuAI ACCTGC 1 cut(s) 2083
BfuI GTATCC 3 cut(s) 596, 2253, 3207
BglI GCCNNNNNGGC 1 cut(s) 2237
BlpI GCTNAGC 1 cut(s) 1518
Bme1390I CCNGG 4 cut(s) 653, 1430, 2828, 3854
Bme18I GGWCC 4 cut(s) 98, 1835, 2843, 3583
BmeRI GACNNNNNGTC 1 cut(s) 3109
BmeT110I CYCGRG 2 cut(s) 729, 1632
BmgBI CACGTC 1 cut(s) 2986
BmgT120I GGNCC 5 cut(s) 98, 1606, 1835, 2843, 3583
BmiI GGNNCC 8 cut(s) 151, 1030, 1434, 1607, 1860, 2947, 3584, 3642
BmrFI CCNGG 4 cut(s) 653, 1430, 2828, 3854
BmrI ACTGGG 1 cut(s) 2192
BmuI ACTGGG 1 cut(s) 2192
BoxI GACNNNNGTC 1 cut(s) 1751
BpmI CTGGAG 3 cut(s) 531, 2112, 2964
Bpu1102I GCTNAGC 1 cut(s) 1518
BpuEI CTTGAG 1 cut(s) 1792
BsaBI GATNNNNATC 2 cut(s) 30, 3848
BsaHI GRCGYC 1 cut(s) 3641
BsaJI CCNNGG 6 cut(s) 153, 195, 561, 651, 1237, 2011
BsaWI WCCGGW 3 cut(s) 100, 419, 1743
BsaXI ACNNNNNCTCC 8 cut(s) 21, 51, 558, 588, 981, 1011, 2110, 2140
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 1349, 1965, 2255, 2669, 3338, 3664
Bse118I RCCGGY 1 cut(s) 2600
Bse1I ACTGG 8 cut(s) 514, 589, 1030, 1728, 1927, 2198, 2271, 3672
Bse21I CCTNAGG 2 cut(s) 1557, 1863
Bse3DI GCAATG 3 cut(s) 1797, 3456, 3813
Bse8I GATNNNNATC 2 cut(s) 30, 3848
BseBI CCWGG 4 cut(s) 653, 1430, 2828, 3854
BseDI CCNNGG 6 cut(s) 153, 195, 561, 651, 1237, 2011
BseJI GATNNNNATC 2 cut(s) 30, 3848
BseLI CCNNNNNNNGG 7 cut(s) 26, 1349, 1965, 2255, 2669, 3338, 3664
BseMI GCAATG 3 cut(s) 1797, 3456, 3813
BseMII CTCAG 7 cut(s) 1178, 1509, 1571, 1692, 1854, 2300, 3047
BseNI ACTGG 8 cut(s) 514, 589, 1030, 1728, 1927, 2198, 2271, 3672
BseRI GAGGAG 2 cut(s) 1005, 1188
BseSI GKGCMC 1 cut(s) 2074
BsgI GTGCAG 3 cut(s) 1733, 2736, 3801
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 4 cut(s) 560, 1608, 1945, 2604
BshNI GGYRCC 2 cut(s) 149, 3640
BsiHKAI GWGCWC 5 cut(s) 549, 1687, 1778, 2074, 3679
BsiHKCI CYCGRG 2 cut(s) 729, 1632
BsiSI CCGG 5 cut(s) 83, 101, 420, 1744, 2601
BslFI GGGAC 1 cut(s) 1575
BslI CCNNNNNNNGG 7 cut(s) 26, 1349, 1965, 2255, 2669, 3338, 3664
BsmAI GTCTC 7 cut(s) 421, 1100, 1170, 1963, 2161, 3388, 3830
BsmFI GGGAC 1 cut(s) 1575
BsmI GAATGC 2 cut(s) 1792, 3484
BsnI GGCC 4 cut(s) 560, 1608, 1945, 2604
BsoBI CYCGRG 2 cut(s) 729, 1632
Bsp1286I GDGCHC 6 cut(s) 549, 1687, 1778, 2074, 2950, 3679
Bsp1720I GCTNAGC 1 cut(s) 1518
Bsp19I CCATGG 2 cut(s) 195, 561
BspACI CCGC 8 cut(s) 57, 675, 957, 1293, 2167, 2531, 2880, 3020
BspANI GGCC 4 cut(s) 560, 1608, 1945, 2604
BspCNI CTCAG 7 cut(s) 1179, 1510, 1570, 1693, 1855, 2301, 3046
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 699
BspLI GGNNCC 8 cut(s) 151, 1030, 1434, 1607, 1860, 2947, 3584, 3642
BspMAI CTGCAG 6 cut(s) 382, 1090, 2227, 2596, 2933, 3508
BspMI ACCTGC 1 cut(s) 2083
BspPI GGATC 8 cut(s) 1409, 1853, 1866, 1995, 2023, 2188, 3237, 3741
BspQI GCTCTTC 2 cut(s) 182, 2020
BspT107I GGYRCC 2 cut(s) 149, 3640
BsrBI CCGCTC 2 cut(s) 677, 1293
BsrDI GCAATG 3 cut(s) 1797, 3456, 3813
BsrFI RCCGGY 1 cut(s) 2600
BsrI ACTGG 8 cut(s) 514, 589, 1030, 1728, 1927, 2198, 2271, 3672
BssAI RCCGGY 1 cut(s) 2600
BssECI CCNNGG 6 cut(s) 153, 195, 561, 651, 1237, 2011
BssNI GRCGYC 1 cut(s) 3641
BssSI CACGAG 1 cut(s) 3624
BssT1I CCWWGG 3 cut(s) 153, 195, 561
Bst2BI CACGAG 1 cut(s) 3624
Bst2UI CCWGG 4 cut(s) 653, 1430, 2828, 3854
Bst6I CTCTTC 5 cut(s) 182, 1494, 2020, 2419, 2799
BstACI GRCGYC 1 cut(s) 3641
BstAPI GCANNNNNTGC 2 cut(s) 1274, 2078
BstC8I GCNNGC 7 cut(s) 130, 1524, 1880, 2602, 2746, 2929, 2965
BstDSI CCRYGG 4 cut(s) 195, 561, 1237, 2011
BstENI CCTNNNNNAGG 2 cut(s) 3336, 3662
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 3644
BstHHI GCGC 2 cut(s) 233, 3643
BstMAI GTCTC 7 cut(s) 421, 1100, 1170, 1963, 2161, 3388, 3830
BstNI CCWGG 4 cut(s) 653, 1430, 2828, 3854
BstNSI RCATGY 1 cut(s) 3890
BstPAI GACNNNNGTC 1 cut(s) 1751
BstSCI CCNGG 4 cut(s) 651, 1428, 2826, 3852
BstSLI GKGCMC 1 cut(s) 2074
BstUI CGCG 1 cut(s) 59
BstX2I RGATCY 4 cut(s) 1858, 2000, 2193, 3229
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 4 cut(s) 1858, 2000, 2193, 3229
Bsu36I CCTNAGG 2 cut(s) 1557, 1863
BsuI GTATCC 3 cut(s) 596, 2253, 3207
BsuRI GGCC 4 cut(s) 560, 1608, 1945, 2604
BtgI CCRYGG 4 cut(s) 195, 561, 1237, 2011
BtgZI GCGATG 1 cut(s) 1751
BtrI CACGTC 1 cut(s) 2986
BtsI GCAGTG 1 cut(s) 3801
BveI ACCTGC 1 cut(s) 2083
Cac8I GCNNGC 7 cut(s) 130, 1524, 1880, 2602, 2746, 2929, 2965
CaiI CAGNNNCTG 2 cut(s) 761, 1700
CciI TCATGA 1 cut(s) 699
CfoI GCGC 2 cut(s) 233, 3643
Cfr10I RCCGGY 1 cut(s) 2600
Cfr13I GGNCC 5 cut(s) 98, 1606, 1835, 2843, 3583
CpoI CGGWCCG 1 cut(s) 98
CseI GACGC 3 cut(s) 48, 1700, 2750
Csp6I GTAC 6 cut(s) 161, 222, 835, 2214, 2734, 2824
CspCI CAANNNNNGTGG 4 cut(s) 127, 162, 3368, 3403
CspI CGGWCCG 1 cut(s) 98
CviQI GTAC 6 cut(s) 161, 222, 835, 2214, 2734, 2824
DinI GGCGCC 1 cut(s) 3642
DraI TTTAAA 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 1977
DriI GACNNNNNGTC 1 cut(s) 3109
DseDI GACNNNNNNGTC 1 cut(s) 1977
Eam1104I CTCTTC 5 cut(s) 182, 1494, 2020, 2419, 2799
Eam1105I GACNNNNNGTC 1 cut(s) 3109
EarI CTCTTC 5 cut(s) 182, 1494, 2020, 2419, 2799
EciI GGCGGA 1 cut(s) 972
Eco130I CCWWGG 3 cut(s) 153, 195, 561
Eco24I GRGCYC 1 cut(s) 2950
Eco47I GGWCC 4 cut(s) 98, 1835, 2843, 3583
Eco57I CTGAAG 3 cut(s) 1518, 2823, 3404
Eco81I CCTNAGG 2 cut(s) 1557, 1863
Eco88I CYCGRG 2 cut(s) 729, 1632
EcoNI CCTNNNNNAGG 2 cut(s) 3336, 3662
EcoO109I RGGNCCY 1 cut(s) 2843
EcoRI GAATTC 2 cut(s) 310, 1656
EcoRII CCWGG 4 cut(s) 651, 1428, 2826, 3852
EcoT14I CCWWGG 3 cut(s) 153, 195, 561
EcoT22I ATGCAT 1 cut(s) 3715
EcoT38I GRGCYC 1 cut(s) 2950
EgeI GGCGCC 1 cut(s) 3642
EheI GGCGCC 1 cut(s) 3642
ErhI CCWWGG 3 cut(s) 153, 195, 561
FalI AAGNNNNNCTT 7 cut(s) 1975, 2007, 2145, 2177, 2273, 2305, 3883
FaqI GGGAC 1 cut(s) 1575
FauI CCCGC 1 cut(s) 682
FauNDI CATATG 1 cut(s) 3463
FbaI TGATCA 6 cut(s) 7, 39, 414, 1933, 2488, 3843
FblI GTMKAC 3 cut(s) 360, 3296, 3767
FriOI GRGCYC 1 cut(s) 2950
GlaI GCGC 2 cut(s) 232, 3642
GsuI CTGGAG 3 cut(s) 531, 2112, 2964
HaeII RGCGCY 1 cut(s) 3644
HaeIII GGCC 4 cut(s) 560, 1608, 1945, 2604
HapII CCGG 5 cut(s) 83, 101, 420, 1744, 2601
HgaI GACGC 3 cut(s) 48, 1700, 2750
HhaI GCGC 2 cut(s) 233, 3643
Hin1I GRCGYC 1 cut(s) 3641
Hin6I GCGC 2 cut(s) 231, 3641
HinP1I GCGC 2 cut(s) 231, 3641
HincII GTYRAC 4 cut(s) 1023, 1741, 3297, 3768
HindII GTYRAC 4 cut(s) 1023, 1741, 3297, 3768
HindIII AAGCTT 1 cut(s) 855
HpaI GTTAAC 1 cut(s) 1741
HpaII CCGG 5 cut(s) 83, 101, 420, 1744, 2601
HphI GGTGA 8 cut(s) 17, 409, 548, 1364, 1592, 2824, 3424, 3503
Hpy166II GTNNAC 9 cut(s) 361, 1023, 1446, 1741, 2072, 2458, 3297, 3599, 3768
Hpy8I GTNNAC 9 cut(s) 361, 1023, 1446, 1741, 2072, 2458, 3297, 3599, 3768
Hpy99I CGWCG 1 cut(s) 64
HpyCH4IV ACGT 3 cut(s) 480, 2985, 3213
HpySE526I ACGT 3 cut(s) 480, 2985, 3213
Hsp92I GRCGYC 1 cut(s) 3641
HspAI GCGC 2 cut(s) 231, 3641
KasI GGCGCC 1 cut(s) 3640
KroI GCCGGC 1 cut(s) 2600
KroNI GCCGGC 1 cut(s) 2602
Ksp22I TGATCA 6 cut(s) 7, 39, 414, 1933, 2488, 3843
KspAI GTTAAC 1 cut(s) 1741
LguI GCTCTTC 2 cut(s) 182, 2020
LmnI GCTCC 5 cut(s) 374, 1034, 1868, 2131, 2945
MaeII ACGT 3 cut(s) 480, 2985, 3213
MaeIII GTNAC 4 cut(s) 113, 3128, 3341, 3554
MbiI CCGCTC 2 cut(s) 677, 1293
MfeI CAATTG 8 cut(s) 234, 777, 1821, 2505, 2633, 2784, 3587, 3618
MflI RGATCY 4 cut(s) 1858, 2000, 2193, 3229
MhlI GDGCHC 6 cut(s) 549, 1687, 1778, 2074, 2950, 3679
Mly113I GGCGCC 1 cut(s) 3641
MlyI GAGTC 5 cut(s) 2492, 3116, 3128, 3708, 3819
MmeI TCCRAC 5 cut(s) 389, 2533, 3004, 3224, 3253
Mph1103I ATGCAT 1 cut(s) 3715
MroNI GCCGGC 1 cut(s) 2600
MroXI GAANNNNTTC 2 cut(s) 2708, 3073
MslI CAYNNNNRTG 3 cut(s) 1054, 2496, 3891
MspA1I CMGCKG 3 cut(s) 383, 1393, 3020
MspI CCGG 5 cut(s) 83, 101, 420, 1744, 2601
MspR9I CCNGG 4 cut(s) 653, 1430, 2828, 3854
MunI CAATTG 8 cut(s) 234, 777, 1821, 2505, 2633, 2784, 3587, 3618
Mva1269I GAATGC 2 cut(s) 1792, 3484
MvaI CCWGG 4 cut(s) 653, 1430, 2828, 3854
MvnI CGCG 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 2602
NarI GGCGCC 1 cut(s) 3641
NcoI CCATGG 2 cut(s) 195, 561
NdeI CATATG 1 cut(s) 3463
NgoMIV GCCGGC 1 cut(s) 2600
NlaIV GGNNCC 8 cut(s) 151, 1030, 1434, 1607, 1860, 2947, 3584, 3642
NmuCI GTSAC 2 cut(s) 3128, 3341
NsiI ATGCAT 1 cut(s) 3715
NspI RCATGY 1 cut(s) 3890
PaeR7I CTCGAG 2 cut(s) 729, 1632
PagI TCATGA 1 cut(s) 699
PaqCI CACCTGC 1 cut(s) 2083
PciSI GCTCTTC 2 cut(s) 182, 2020
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 2 cut(s) 1792, 3484
PdiI GCCGGC 1 cut(s) 2602
PdmI GAANNNNTTC 2 cut(s) 2708, 3073
PflMI CCANNNNNTGG 1 cut(s) 1349
PfoI TCCNGGA 1 cut(s) 3852
PleI GAGTC 5 cut(s) 2491, 3116, 3128, 3707, 3818
PluTI GGCGCC 1 cut(s) 3644
PpsI GAGTC 5 cut(s) 2491, 3116, 3128, 3707, 3818
PpuMI RGGWCCY 1 cut(s) 2843
PshAI GACNNNNGTC 1 cut(s) 1751
PshBI ATTAAT 2 cut(s) 288, 2336
PsiI TTATAA 3 cut(s) 1095, 1886, 2645
Psp5II RGGWCCY 1 cut(s) 2843
Psp6I CCWGG 4 cut(s) 651, 1428, 2826, 3852
PspGI CCWGG 4 cut(s) 651, 1428, 2826, 3852
PspN4I GGNNCC 8 cut(s) 151, 1030, 1434, 1607, 1860, 2947, 3584, 3642
PspPI GGNCC 5 cut(s) 98, 1606, 1835, 2843, 3583
PspPPI RGGWCCY 1 cut(s) 2843
PspXI VCTCGAGB 1 cut(s) 1632
PstI CTGCAG 6 cut(s) 382, 1090, 2227, 2596, 2933, 3508
PstNI CAGNNNCTG 2 cut(s) 761, 1700
PsuI RGATCY 4 cut(s) 1858, 2000, 2193, 3229
PvuII CAGCTG 2 cut(s) 383, 1393
RsaI GTAC 6 cut(s) 162, 223, 836, 2215, 2735, 2825
RsaNI GTAC 6 cut(s) 161, 222, 835, 2214, 2734, 2824
RseI CAYNNNNRTG 3 cut(s) 1054, 2496, 3891
Rsr2I CGGWCCG 1 cut(s) 98
RsrII CGGWCCG 1 cut(s) 98
SalI GTCGAC 2 cut(s) 3295, 3766
SapI GCTCTTC 2 cut(s) 182, 2020
Sau96I GGNCC 5 cut(s) 98, 1606, 1835, 2843, 3583
SchI GAGTC 5 cut(s) 2492, 3116, 3128, 3708, 3819
ScrFI CCNGG 4 cut(s) 653, 1430, 2828, 3854
SduI GDGCHC 6 cut(s) 549, 1687, 1778, 2074, 2950, 3679
SfoI GGCGCC 1 cut(s) 3642
Sfr274I CTCGAG 2 cut(s) 729, 1632
SinI GGWCC 4 cut(s) 98, 1835, 2843, 3583
SlaI CTCGAG 2 cut(s) 729, 1632
SmiMI CAYNNNNRTG 3 cut(s) 1054, 2496, 3891
SmlI CTYRAG 3 cut(s) 729, 1632, 1771
SmoI CTYRAG 3 cut(s) 729, 1632, 1771
SpeI ACTAGT 1 cut(s) 110
SsiI CCGC 8 cut(s) 57, 675, 957, 1293, 2167, 2531, 2880, 3020
SspDI GGCGCC 1 cut(s) 3640
SspI AATATT 2 cut(s) 468, 1468
StyD4I CCNGG 4 cut(s) 651, 1428, 2826, 3852
StyI CCWWGG 3 cut(s) 153, 195, 561
TaiI ACGT 3 cut(s) 483, 2988, 3216
TatI WGTACW 1 cut(s) 834
TauI GCSGC 3 cut(s) 59, 2169, 2534
TseFI GTSAC 2 cut(s) 3128, 3341
Tsp45I GTSAC 2 cut(s) 3128, 3341
TspGWI ACGGA 2 cut(s) 111, 1226
Van91I CCANNNNNTGG 1 cut(s) 1349
VneI GTGCAC 1 cut(s) 2070
VpaK11BI GGWCC 4 cut(s) 98, 1835, 2843, 3583
VspI ATTAAT 2 cut(s) 288, 2336
XagI CCTNNNNNAGG 2 cut(s) 3336, 3662
XapI RAATTY 4 cut(s) 310, 1538, 1656, 2975
XbaI TCTAGA 1 cut(s) 1666
XceI RCATGY 1 cut(s) 3890
XcmI CCANNNNNNNNNTGG 1 cut(s) 3593
XhoI CTCGAG 2 cut(s) 729, 1632
XmiI GTMKAC 3 cut(s) 360, 3296, 3767
XmnI GAANNNNTTC 2 cut(s) 2708, 3073
Zsp2I ATGCAT 1 cut(s) 3715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.