Rh3AG272400

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000116
Physical Location & Seq
Reverse (-)
31056379 .. 31061056
4678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG272400.1

Sequence Viewer

Length: 3420 bp
ATGGAAACAAACACTGGAGAGGTAGTTGGGAGAATGTCTGGTGACACTGTTCTCATTCAAGATGCCATGGGGGAGAAGGTTGGAAAAGTCTTACAGCTGCTTTCAACATTCATTGGAGGGTTTATAATAGCATTCATCAAAGGGTGGCTTCTCACTCTTGTCATGCTATCCTCTATTCCTTTGCTTGTGGCATCTGGTGCAACGATGTCCATCATTATAACCAAGATGGCATCCCGTGGACAAACTGCTTACGCAAAAGCAGCAAATGTAGTTGAACAAACAATTGGGTCCATTAGAACTGTTGCATCATTTACTGGCGAGAGGGAAGCTATAACTAGTTATAACAAATATCTCGTAGATGCTTACAAATCAGGTGTTCATGAAGGTTCAGCTGCTGGAATAGGTCTTGGCTTGGTTATGTGTGTTGTGTTCAGCTCATATGCCTTGGCTGTATGGTTTGGTTCAAAGATGATAAGGGAAAATGGATATACTGGGGGTGAAGTACTGAATGTGATTGTTGCTGTGTTGACTGGATCTATGTCTTTAGGGCAGACATCACCATGCATGAGTGCATTTGCTGCTGGTCAAGCTGCAGCTTATAAGATGTTTCAGACTATTAGTAGGAAGCCAGAGATAGATGCTTATGATGAAAAGGGAAAGACTTTGGGTGACATTTCGGGAGACATAGAGTTGAGAGATGTTTATTTCAGCTATCCAGCCAGACCGGATGAGCAAATATTTGACGGGTTCTCTCTTTGTATCCCTAGTGGCACAACTGCTGCTTTGGTTGGACAAAGTGGAAGTGGCAAGTCAACAGTCATCAGTCTGATAGAGAGATTTTATGATCCGCAAGCTGGTGAAGTTTTAATAGATGGCATAAACCTAAAAGAATTTCAACTTAAATGGATTCGGAGTAAAATTGGTCTTGTCAGTCAGGAACCTGTCCTGTTTGCATCCAGCATTAAGGAAAATATTGCCTATGGAAAGGATGGTGCTACCTCTGAAGAGATACAAGCAGCAGCTGAGCTTGCAAATGCGGCTAAATTTGTTGATAAATTGCCTCAGGGCCTTGACAGCTTGGTCGGTGAGCATGGAACTCAGCTGTCTGGTGGGCAGAAGCAGAGAATTGCTATTGCAAGAGCAATTTTGAAAGACCCAAGGATTTTACTTCTGGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAGAGGGTAGTTCAAGAAGCATTGGATAGGATTATGGTTAACCGAACTACTGTTGTTGTCGCTCATCGTTTGAGTACAGTGAGGAATGCAGACATGATTGCTGTCATTCATAAAGGAAAGATGGTTGAAAAAGGTTCACACTTGAATTTACTCAAAGATCCTGAGGGAGCTTACTCTCAGCTTATACGCTTGCAAGAAGTAAACAAAGAGTCAGAACAAACGTCAGACGACCAAAACAAACCTGAAATAACTCTGGCATCTCTTAGACAGTCAAGTCAAAGAACATCGAGTCAAAGACTTTCGTTTGCACGATCCTTAAGTAGAAATTCCTCCGTAGGAAATAGCAGCCGTCACTCATATTCAGTGGCATTTGGTTTACCCACTGGACTTGGAGGCATTGGTGTCCAAGATGCTGCATATGAAGAAACAGAACTAGCACCAGAGCAACCTCCAAAGGTCTCACTCCGCCGCATTGCTGCCCTGAACAAACCTGAGATTCCAGTTCTTATTATTGGAACTATAGCTGCAATCATCAATGGTGTTATACTTCCAATATTTGGTGTGCTCATTTCCAGGGTTATAAAGACTTTCTATGAACCACCTCATCAACAGAAGAAAGATGCAGCATTTTGGGCAATAATTTTTATGATCCTTGGTCTGATATCATTCGTGGTGATCCCAGCACGAGGATATTTCTTTTCAGTAGCTGGCAGCAAGTTAATTCAGCGTATCAGATTATTGTGTTTTGAGAGAGTGGTTCACATGGAGGTTGGGTGGTTTGATGAGCCTGAGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCAGCGTCGGTGAGGGCCCTAGTAGGAGACGCTCTAGCTCAGATGGTTCAAAACATGGCAGCTGCAGTTGCAGGTTTGGTCATTGCTTATATTGCATGTTGGCAGTTGGCATTTATTATCCTCGCACTGCTTCCTCTCATTGCAGTTAACGGATATGTACAAATAAAGTTCATGAAAGGATTCAGCGCAGATGCAAAGATGATGTATGAGGAGGCAAGCCAAGTTGCTAATGACGCAGTTGGAAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTATACAGAAGGAAATGTGAAGGCCCTATGAAGACAGGGATAAGACAAGGCTTGATCAGTGGTATAGGATTTGGGGTATCTTTCTTCTTTTTGTTTTGTGTCTACGCAACCAGTTTCTATGCGGGAGCTCAACTCGTGAAGGCTGGCAAAACAACATTTACAGACGTTTTCCAAGTTTTCTTTGCTCTGACCATGGCAGCTACCGGAATTTCTCAATCAAGCTCCTTTGGTCCCGATTCTGGTAAAGCCAAAACTTCTGCTGCTTCCATATTTGCAATAATAGACCGGCCATCAAAGATAGACCCAAGTAACGAGTCTGGTACAAAAATTGATGGTGGTGTGAAAGGAGAGATTGAGCTTCGCCATGTAAGCTTTAAGTATCCATCTAGGCCAGAAACACCTATTTTCCGAGACCTCAATTTAACTATCCGCTCTGGCAAGACGGTTGCCCTGGTCGGAGAAAGTGGGAGCGGAAAATCAACTGTTGTTGCATTGTTGCAAAGATTTTATGATCCGGATTCAGGTCATATCACACTTGATGGAATTGAACTTGGCAACTACAACTTGAAATGGTTGAGGCAGCAGATGGGACTCGTAAGTCAAGAACCTGTTTTATTTAATGACACCATTCGCGCCAACATTGCGTATGGAAAGGAAGAAACTGCAACTGAGGCAGAAATTATAGCTGCATCAGAGTTGGCCAATGCCCACAAGTTCATCAGTACCCTACACCAGGGCTATGATACCGTAGTAGGAGAACGAGGAATCCAATTATCCGGGGGGCAGAAGCAACGTGTAGCCATTGCGCGTGCTATAATCAAGAGCCCCAAGATATTACTGTTGGATGAAGCTACGAGTGCACTTGATGCCGAATCTGAGAGAGTGGTTCAAGATGCATTAGACCGAGTCATGGTGAACCGGACAACAGTGGTGGTGGCTCATAGACTATCCACAATCAAGAATGCTGATGTGATTGCAGTGGTTAAAAATGGAGTTATAGTAGAGAAAGGGAAGCATGACAATTTGATTAATATCACCGATGGGTTTTATGCATCCCTAGTTGCTCTTCACATGAGCTCTTCAACTGCATGA

Protein Analysis

1139

Amino Acids

122.61

Weight (kDa)

7.24

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 3 - 180 1.4e-36 ABC transporter transmembrane region
ABC_tran PF00005 248 - 396 2.6e-33 ABC transporter
ABC_membrane PF00664 571 - 842 2.7e-59 ABC transporter transmembrane region
ABC_tran PF00005 913 - 1062 3.2e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 125, 218, 342, 600, 1787
AasI GACNNNNNNGTC 3 cut(s) 1079, 1479, 2925
Acc36I ACCTGC 1 cut(s) 2099
AccB7I CCANNNNNTGG 1 cut(s) 1763
AccBSI CCGCTC 2 cut(s) 2760, 2799
AccI GTMKAC 1 cut(s) 2430
AccII CGCG 2 cut(s) 2961, 3136
AccIII TCCGGA 1 cut(s) 2842
AciI CCGC 7 cut(s) 848, 1037, 1672, 1675, 2450, 2758, 2799
AclWI GGATC 7 cut(s) 541, 839, 1358, 1512, 1849, 1876, 2834
AcoI YGGCCR 2 cut(s) 2615, 3027
AcsI RAATTY 5 cut(s) 890, 1043, 1351, 1531, 2535
AcuI CTGAAG 2 cut(s) 1023, 2331
AfaI GTAC 5 cut(s) 504, 1282, 2196, 2650, 3052
AfiI CCNNNNNNNGG 7 cut(s) 854, 1763, 1892, 2567, 2849, 3061, 3238
AflII CTTAAG 1 cut(s) 1522
AflIII ACRYGT 1 cut(s) 3121
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 3 cut(s) 1778, 2778, 3060
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AloI GAACNNNNNNTCC 2 cut(s) 3078, 3110
Alw21I GWGCWC 5 cut(s) 1192, 1773, 2458, 3190, 3407
Alw26I GTCTC 4 cut(s) 675, 1669, 2058, 2733
Alw44I GTGCAC 2 cut(s) 1188, 3186
AlwI GGATC 7 cut(s) 541, 839, 1358, 1512, 1849, 1876, 2834
AlwNI CAGNNNCTG 4 cut(s) 395, 1022, 1205, 1913
Aor13HI TCCGGA 1 cut(s) 2842
AoxI GGCC 6 cut(s) 1066, 2052, 2350, 2615, 2717, 3027
ApaI GGGCCC 1 cut(s) 2056
ApaLI GTGCAC 2 cut(s) 1188, 3186
ApoI RAATTY 5 cut(s) 890, 1043, 1351, 1531, 2535
AseI ATTAAT 1 cut(s) 3357
Asp700I GAANNNNTTC 1 cut(s) 2216
AspLEI GCGC 3 cut(s) 2225, 2963, 3136
AspS9I GGNCC 6 cut(s) 288, 1066, 2052, 2053, 2351, 2558
AsuC2I CCSGG 1 cut(s) 3106
AvaII GGWCC 2 cut(s) 288, 2558
AxyI CCTNAGG 2 cut(s) 1062, 1368
BaeGI GKGCMC 3 cut(s) 1192, 2056, 3190
BaeI ACNNNNGTAYC 2 cut(s) 3063, 3096
BalI TGGCCA 1 cut(s) 3029
BanII GRGCYC 4 cut(s) 2056, 2458, 3155, 3407
BauI CACGAG 2 cut(s) 1890, 2462
BbsI GAAGAC 1 cut(s) 2366
Bbv12I GWGCWC 5 cut(s) 1192, 1773, 2458, 3190, 3407
BceAI ACGGC 1 cut(s) 1539
BciT130I CCWGG 3 cut(s) 1780, 2780, 3062
BciVI GTATCC 2 cut(s) 770, 2718
BclI TGATCA 1 cut(s) 2382
BcnI CCSGG 1 cut(s) 3106
BcoDI GTCTC 4 cut(s) 675, 1669, 2058, 2733
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 7 cut(s) 336, 765, 1640, 2057, 2072, 2715, 3386
BfmI CTRYAG 3 cut(s) 591, 1725, 2100
BfrI CTTAAG 1 cut(s) 1522
BfuAI ACCTGC 1 cut(s) 2099
BfuI GTATCC 2 cut(s) 770, 2718
BlpI GCTNAGC 1 cut(s) 1023
BmcAI AGTACT 1 cut(s) 504
Bme1390I CCNGG 4 cut(s) 1780, 2780, 3062, 3106
Bme18I GGWCC 2 cut(s) 288, 2558
BmgT120I GGNCC 6 cut(s) 288, 1066, 2052, 2053, 2351, 2558
BmiI GGNNCC 4 cut(s) 289, 939, 2054, 2560
BmrFI CCNGG 4 cut(s) 1780, 2780, 3062, 3106
BmrI ACTGGG 1 cut(s) 501
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 2366
BplI GAGNNNNNCTC 2 cut(s) 2445, 2477
BpmI CTGGAG 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 1023
BpuEI CTTGAG 1 cut(s) 1987
BpuMI CCSGG 1 cut(s) 3106
BsaBI GATNNNNATC 2 cut(s) 209, 3359
BsaI GGTCTC 2 cut(s) 1669, 2733
BsaWI WCCGGW 4 cut(s) 724, 2531, 2842, 3246
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 1964, 1994, 3312, 3342
Bsc4I CCNNNNNNNGG 7 cut(s) 854, 1763, 1892, 2567, 2849, 3061, 3238
Bse118I RCCGGY 1 cut(s) 2613
Bse1I ACTGG 7 cut(s) 19, 319, 496, 535, 1594, 1706, 2439
Bse21I CCTNAGG 2 cut(s) 1062, 1368
Bse3DI GCAATG 5 cut(s) 1677, 2118, 2175, 2967, 3129
Bse8I GATNNNNATC 2 cut(s) 209, 3359
BseAI TCCGGA 1 cut(s) 2842
BseBI CCWGG 3 cut(s) 1780, 2780, 3062
BseGI GGATG 7 cut(s) 230, 733, 953, 994, 1180, 3178, 3380
BseJI GATNNNNATC 2 cut(s) 209, 3359
BseLI CCNNNNNNNGG 7 cut(s) 854, 1763, 1892, 2567, 2849, 3061, 3238
BseMI GCAATG 5 cut(s) 1677, 2118, 2175, 2967, 3129
BseNI ACTGG 7 cut(s) 19, 319, 496, 535, 1594, 1706, 2439
BseRI GAGGAG 1 cut(s) 2261
BseSI GKGCMC 3 cut(s) 1192, 2056, 3190
BseYI CCCAGC 1 cut(s) 1885
Bsh1236I CGCG 2 cut(s) 2961, 3136
BshFI GGCC 6 cut(s) 1068, 2054, 2352, 2617, 2719, 3029
BsiHKAI GWGCWC 5 cut(s) 1192, 1773, 2458, 3190, 3407
BsiSI CCGG 6 cut(s) 725, 2532, 2614, 2843, 3105, 3247
BslFI GGGAC 2 cut(s) 2544, 2931
BslI CCNNNNNNNGG 7 cut(s) 854, 1763, 1892, 2567, 2849, 3061, 3238
BsmAI GTCTC 4 cut(s) 675, 1669, 2058, 2733
BsmBI CGTCTC 1 cut(s) 2058
BsmFI GGGAC 2 cut(s) 2544, 2931
BsmI GAATGC 3 cut(s) 131, 1297, 3295
BsnI GGCC 6 cut(s) 1068, 2054, 2352, 2617, 2719, 3029
Bso31I GGTCTC 2 cut(s) 1669, 2733
Bsp120I GGGCCC 1 cut(s) 2052
Bsp1286I GDGCHC 7 cut(s) 1192, 1773, 2056, 2458, 3155, 3190, 3407
Bsp13I TCCGGA 1 cut(s) 2842
Bsp1407I TGTACA 1 cut(s) 2194
Bsp143I GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
Bsp1720I GCTNAGC 1 cut(s) 1023
Bsp19I CCATGG 2 cut(s) 66, 2520
BspACI CCGC 7 cut(s) 848, 1037, 1672, 1675, 2450, 2758, 2799
BspANI GGCC 6 cut(s) 1068, 2054, 2352, 2617, 2719, 3029
BspEI TCCGGA 1 cut(s) 2842
BspFNI CGCG 2 cut(s) 2961, 3136
BspHI TCATGA 2 cut(s) 379, 2208
BspLI GGNNCC 4 cut(s) 289, 939, 2054, 2560
BspMAI CTGCAG 2 cut(s) 595, 2104
BspMI ACCTGC 1 cut(s) 2099
BspPI GGATC 7 cut(s) 541, 839, 1358, 1512, 1849, 1876, 2834
BspQI GCTCTTC 2 cut(s) 3399, 3412
BspTI CTTAAG 1 cut(s) 1522
BspTNI GGTCTC 2 cut(s) 1669, 2733
BsrBI CCGCTC 2 cut(s) 2760, 2799
BsrDI GCAATG 5 cut(s) 1677, 2118, 2175, 2967, 3129
BsrFI RCCGGY 1 cut(s) 2613
BsrGI TGTACA 1 cut(s) 2194
BsrI ACTGG 7 cut(s) 19, 319, 496, 535, 1594, 1706, 2439
BssAI RCCGGY 1 cut(s) 2613
BssMI GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
BssSI CACGAG 2 cut(s) 1890, 2462
BssT1I CCWWGG 5 cut(s) 66, 444, 1157, 1858, 2520
Bst2BI CACGAG 2 cut(s) 1890, 2462
Bst2UI CCWGG 3 cut(s) 1780, 2780, 3062
Bst6I CTCTTC 4 cut(s) 999, 2307, 3399, 3412
BstAFI CTTAAG 1 cut(s) 1522
BstAPI GCANNNNNTGC 5 cut(s) 197, 578, 1196, 2018, 3194
BstAUI TGTACA 1 cut(s) 2194
BstC8I GCNNGC 7 cut(s) 852, 1029, 1397, 1915, 2254, 2473, 3138
BstDSI CCRYGG 3 cut(s) 66, 235, 2520
BstENI CCTNNNNNAGG 1 cut(s) 3059
BstF5I GGATG 7 cut(s) 230, 733, 953, 994, 1180, 3178, 3380
BstFNI CGCG 2 cut(s) 2961, 3136
BstHHI GCGC 3 cut(s) 2225, 2963, 3136
BstKTI GATC 8 cut(s) 536, 847, 1366, 1520, 1857, 1884, 2385, 2842
BstMAI GTCTC 4 cut(s) 675, 1669, 2058, 2733
BstMBI GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
BstNI CCWGG 3 cut(s) 1780, 2780, 3062
BstNSI RCATGY 1 cut(s) 2136
BstSCI CCNGG 4 cut(s) 1778, 2778, 3060, 3104
BstSFI CTRYAG 3 cut(s) 591, 1725, 2100
BstSLI GKGCMC 3 cut(s) 1192, 2056, 3190
BstUI CGCG 2 cut(s) 2961, 3136
BstV2I GAAGAC 1 cut(s) 2366
BstX2I RGATCY 2 cut(s) 533, 1363
BstYI RGATCY 2 cut(s) 533, 1363
Bsu36I CCTNAGG 2 cut(s) 1062, 1368
BsuI GTATCC 2 cut(s) 770, 2718
BsuRI GGCC 6 cut(s) 1068, 2054, 2352, 2617, 2719, 3029
BtgI CCRYGG 3 cut(s) 66, 235, 2520
BtsCI GGATG 7 cut(s) 230, 733, 953, 994, 1180, 3178, 3380
BtsI GCAGTG 2 cut(s) 2162, 3312
BtsIMutI CAGTG 9 cut(s) 12, 45, 1290, 1575, 1587, 2162, 2392, 3261, 3312
BveI ACCTGC 1 cut(s) 2099
Cac8I GCNNGC 7 cut(s) 852, 1029, 1397, 1915, 2254, 2473, 3138
CaiI CAGNNNCTG 4 cut(s) 395, 1022, 1205, 1913
CciI TCATGA 2 cut(s) 379, 2208
CfoI GCGC 3 cut(s) 2225, 2963, 3136
Cfr10I RCCGGY 1 cut(s) 2613
Cfr13I GGNCC 6 cut(s) 288, 1066, 2052, 2053, 2351, 2558
CseI GACGC 3 cut(s) 2031, 2075, 2279
Csp6I GTAC 5 cut(s) 503, 1281, 2195, 2649, 3051
CspCI CAANNNNNGTGG 4 cut(s) 1576, 1611, 3240, 3275
CviQI GTAC 5 cut(s) 503, 1281, 2195, 2649, 3051
DpnI GATC 8 cut(s) 535, 846, 1365, 1519, 1856, 1883, 2384, 2841
DpnII GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
DrdI GACNNNNNNGTC 3 cut(s) 1079, 1479, 2925
DseDI GACNNNNNNGTC 3 cut(s) 1079, 1479, 2925
EaeI YGGCCR 2 cut(s) 2615, 3027
Eam1104I CTCTTC 4 cut(s) 999, 2307, 3399, 3412
EarI CTCTTC 4 cut(s) 999, 2307, 3399, 3412
EciI GGCGGA 1 cut(s) 1661
Ecl136II GAGCTC 2 cut(s) 2456, 3405
Eco130I CCWWGG 5 cut(s) 66, 444, 1157, 1858, 2520
Eco24I GRGCYC 4 cut(s) 2056, 2458, 3155, 3407
Eco31I GGTCTC 2 cut(s) 1669, 2733
Eco32I GATATC 1 cut(s) 1869
Eco47I GGWCC 2 cut(s) 288, 2558
Eco53kI GAGCTC 2 cut(s) 2456, 3405
Eco57I CTGAAG 2 cut(s) 1023, 2331
Eco81I CCTNAGG 2 cut(s) 1062, 1368
EcoICRI GAGCTC 2 cut(s) 2456, 3405
EcoNI CCTNNNNNAGG 1 cut(s) 3059
EcoO109I RGGNCCY 4 cut(s) 1066, 2052, 2053, 2351
EcoRII CCWGG 3 cut(s) 1778, 2778, 3060
EcoRV GATATC 1 cut(s) 1869
EcoT14I CCWWGG 5 cut(s) 66, 444, 1157, 1858, 2520
EcoT22I ATGCAT 3 cut(s) 566, 3226, 3382
EcoT38I GRGCYC 4 cut(s) 2056, 2458, 3155, 3407
ErhI CCWWGG 5 cut(s) 66, 444, 1157, 1858, 2520
Esp3I CGTCTC 1 cut(s) 2058
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 2 cut(s) 2544, 2931
FauI CCCGC 1 cut(s) 2443
FauNDI CATATG 2 cut(s) 439, 1624
FbaI TGATCA 1 cut(s) 2382
FblI GTMKAC 1 cut(s) 2430
FokI GGATG 7 cut(s) 217, 740, 940, 1001, 1187, 3185, 3367
FriOI GRGCYC 4 cut(s) 2056, 2458, 3155, 3407
FspBI CTAG 7 cut(s) 336, 765, 1640, 2057, 2072, 2715, 3386
GlaI GCGC 3 cut(s) 2224, 2962, 3135
GsaI CCCAGC 1 cut(s) 1889
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 6 cut(s) 1068, 2054, 2352, 2617, 2719, 3029
HapII CCGG 6 cut(s) 725, 2532, 2614, 2843, 3105, 3247
HgaI GACGC 3 cut(s) 2031, 2075, 2279
HhaI GCGC 3 cut(s) 2225, 2963, 3136
Hin6I GCGC 3 cut(s) 2223, 2961, 3134
HinP1I GCGC 3 cut(s) 2223, 2961, 3134
HincII GTYRAC 4 cut(s) 528, 813, 1246, 2185
HindII GTYRAC 4 cut(s) 528, 813, 1246, 2185
HindIII AAGCTT 1 cut(s) 2698
HpaI GTTAAC 2 cut(s) 1246, 2185
HpaII CCGG 6 cut(s) 725, 2532, 2614, 2843, 3105, 3247
Hpy99I CGWCG 1 cut(s) 2047
HpyAV CCTTC 6 cut(s) 70, 377, 2311, 2331, 2342, 2461
HpyCH4IV ACGT 3 cut(s) 1427, 2493, 3121
HpySE526I ACGT 3 cut(s) 1427, 2493, 3121
HspAI GCGC 3 cut(s) 2223, 2961, 3134
Kpn2I TCCGGA 1 cut(s) 2842
Ksp22I TGATCA 1 cut(s) 2382
KspAI GTTAAC 2 cut(s) 1246, 2185
Kzo9I GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
LguI GCTCTTC 2 cut(s) 3399, 3412
LmnI GCTCC 4 cut(s) 1373, 2453, 2555, 2796
MaeI CTAG 7 cut(s) 336, 765, 1640, 2057, 2072, 2715, 3386
MaeII ACGT 3 cut(s) 1427, 2493, 3121
MaeIII GTNAC 4 cut(s) 41, 668, 1556, 2636
MalI GATC 8 cut(s) 535, 846, 1365, 1519, 1856, 1883, 2384, 2841
MbiI CCGCTC 2 cut(s) 2760, 2799
MboI GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
MboII GAAGA 9 cut(s) 1016, 1640, 1831, 2324, 2371, 2404, 2996, 3386, 3399
MfeI CAATTG 2 cut(s) 282, 2013
MflI RGATCY 2 cut(s) 533, 1363
MhlI GDGCHC 7 cut(s) 1192, 1773, 2056, 2458, 3155, 3190, 3407
MlsI TGGCCA 1 cut(s) 3029
MluNI TGGCCA 1 cut(s) 3029
MlyI GAGTC 5 cut(s) 1424, 1504, 2651, 2913, 3243
MmeI TCCRAC 5 cut(s) 61, 769, 2257, 2764, 3150
Mox20I TGGCCA 1 cut(s) 3029
Mph1103I ATGCAT 3 cut(s) 566, 3226, 3382
MroI TCCGGA 1 cut(s) 2842
MroXI GAANNNNTTC 1 cut(s) 2216
MscI TGGCCA 1 cut(s) 3029
MslI CAYNNNNRTG 1 cut(s) 559
Msp20I TGGCCA 1 cut(s) 3029
MspA1I CMGCKG 5 cut(s) 97, 392, 1022, 1102, 2099
MspCI CTTAAG 1 cut(s) 1522
MspI CCGG 6 cut(s) 725, 2532, 2614, 2843, 3105, 3247
MspR9I CCNGG 4 cut(s) 1780, 2780, 3062, 3106
MunI CAATTG 2 cut(s) 282, 2013
Mva1269I GAATGC 3 cut(s) 131, 1297, 3295
MvaI CCWGG 3 cut(s) 1780, 2780, 3062
MvnI CGCG 2 cut(s) 2961, 3136
NciI CCSGG 1 cut(s) 3106
NcoI CCATGG 2 cut(s) 66, 2520
NdeI CATATG 2 cut(s) 439, 1624
NdeII GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
NlaIV GGNNCC 4 cut(s) 289, 939, 2054, 2560
NmuCI GTSAC 3 cut(s) 41, 668, 1556
NsiI ATGCAT 3 cut(s) 566, 3226, 3382
NspI RCATGY 1 cut(s) 2136
PagI TCATGA 2 cut(s) 379, 2208
PciSI GCTCTTC 2 cut(s) 3399, 3412
PctI GAATGC 3 cut(s) 131, 1297, 3295
PdmI GAANNNNTTC 1 cut(s) 2216
PfeI GAWTC 8 cut(s) 907, 1202, 1702, 2217, 2564, 2846, 3093, 3200
PflFI GACNNNGTC 1 cut(s) 3233
PflMI CCANNNNNTGG 1 cut(s) 1763
PleI GAGTC 5 cut(s) 1423, 1503, 2650, 2913, 3242
PpsI GAGTC 5 cut(s) 1423, 1503, 2650, 2913, 3242
PshBI ATTAAT 1 cut(s) 3357
PsiI TTATAA 5 cut(s) 125, 218, 342, 600, 1787
Psp124BI GAGCTC 2 cut(s) 2458, 3407
Psp6I CCWGG 3 cut(s) 1778, 2778, 3060
PspFI CCCAGC 1 cut(s) 1885
PspGI CCWGG 3 cut(s) 1778, 2778, 3060
PspN4I GGNNCC 4 cut(s) 289, 939, 2054, 2560
PspOMI GGGCCC 1 cut(s) 2052
PspPI GGNCC 6 cut(s) 288, 1066, 2052, 2053, 2351, 2558
PstI CTGCAG 2 cut(s) 595, 2104
PstNI CAGNNNCTG 4 cut(s) 395, 1022, 1205, 1913
PsuI RGATCY 2 cut(s) 533, 1363
PsyI GACNNNGTC 1 cut(s) 3233
PvuII CAGCTG 5 cut(s) 97, 392, 1022, 1102, 2099
RsaI GTAC 5 cut(s) 504, 1282, 2196, 2650, 3052
RsaNI GTAC 5 cut(s) 503, 1281, 2195, 2649, 3051
RseI CAYNNNNRTG 1 cut(s) 559
SacI GAGCTC 2 cut(s) 2458, 3407
SapI GCTCTTC 2 cut(s) 3399, 3412
Sau3AI GATC 8 cut(s) 533, 844, 1363, 1517, 1854, 1881, 2382, 2839
Sau96I GGNCC 6 cut(s) 288, 1066, 2052, 2053, 2351, 2558
ScaI AGTACT 1 cut(s) 504
SchI GAGTC 5 cut(s) 1424, 1504, 2651, 2913, 3243
ScrFI CCNGG 4 cut(s) 1780, 2780, 3062, 3106
SduI GDGCHC 7 cut(s) 1192, 1773, 2056, 2458, 3155, 3190, 3407
SfcI CTRYAG 3 cut(s) 591, 1725, 2100
SinI GGWCC 2 cut(s) 288, 2558
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 2 cut(s) 1522, 2002
SmoI CTYRAG 2 cut(s) 1522, 2002
SpeI ACTAGT 1 cut(s) 335
SsiI CCGC 7 cut(s) 848, 1037, 1672, 1675, 2450, 2758, 2799
SspI AATATT 3 cut(s) 738, 973, 1761
SspMI CTAG 7 cut(s) 336, 765, 1640, 2057, 2072, 2715, 3386
SstI GAGCTC 2 cut(s) 2458, 3407
StyD4I CCNGG 4 cut(s) 1778, 2778, 3060, 3104
StyI CCWWGG 5 cut(s) 66, 444, 1157, 1858, 2520
TaiI ACGT 3 cut(s) 1430, 2496, 3124
TaqI TCGA 1 cut(s) 1493
TaqII GACCGA 1 cut(s) 3246
TatI WGTACW 3 cut(s) 502, 1280, 2194
TauI GCSGC 2 cut(s) 1040, 1677
TfiI GAWTC 8 cut(s) 907, 1202, 1702, 2217, 2564, 2846, 3093, 3200
TscAI CASTG 9 cut(s) 19, 52, 1290, 1575, 1594, 2169, 2392, 3261, 3312
TseFI GTSAC 3 cut(s) 41, 668, 1556
Tsp45I GTSAC 3 cut(s) 41, 668, 1556
TspGWI ACGGA 2 cut(s) 1528, 2202
TspRI CASTG 9 cut(s) 19, 52, 1290, 1575, 1594, 2169, 2392, 3261, 3312
Tth111I GACNNNGTC 1 cut(s) 3233
Van91I CCANNNNNTGG 1 cut(s) 1763
Vha464I CTTAAG 1 cut(s) 1522
VneI GTGCAC 2 cut(s) 1188, 3186
VpaK11BI GGWCC 2 cut(s) 288, 2558
VspI ATTAAT 1 cut(s) 3357
XagI CCTNNNNNAGG 1 cut(s) 3059
XapI RAATTY 5 cut(s) 890, 1043, 1351, 1531, 2535
XceI RCATGY 1 cut(s) 2136
XmiI GTMKAC 1 cut(s) 2430
XmnI GAANNNNTTC 1 cut(s) 2216
XspI CTAG 7 cut(s) 336, 765, 1640, 2057, 2072, 2715, 3386
ZrmI AGTACT 1 cut(s) 504
Zsp2I ATGCAT 3 cut(s) 566, 3226, 3382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.