Rmu_sc0003337.1_g000015

Multidrug resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003337.1
OG0000116
Physical Location & Seq
Forward (+)
38542 .. 38913
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003337.1_g000015.1.cds

Sequence Viewer

Length: 372 bp
atggaaaatggatatgacacttattgtggagaaagaggagttcagctatcaggtggccagaagcagagaatagcacttgcccgagccatactaaagaacccaagtatccttctcttggatgaagcaaccagtgcccttgatagcgtgtcagagaatctagtccaagaagcactggagaagatgatggttggcagaacatgtgtagtggtagctcacaggttgtccacaatacaaaaagcagactccatagcggtgataatgaatgggaaagtagtagaacaaggatcacactctgaactggtttcaattggaagtagtggtgcctactactctttgataaaactacaaagcaatcaagcaatctcagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

123

Amino Acids

13.13

Weight (kDa)

6.08

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 306
AluBI AGCT 2 cut(s) 46, 212
AluI AGCT 2 cut(s) 46, 212
AlwI GGATC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 136
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 320
BccI CCATC 1 cut(s) 178
BciVI GTATCC 1 cut(s) 116
BfaI CTAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 3 cut(s) 129, 177, 303
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 3 cut(s) 129, 177, 303
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 136
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 284
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 292
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 3 cut(s) 129, 177, 303
BssMI GATC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 1 cut(s) 287
BstMBI GATC 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 131, 365
BstNSI RCATGY 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 136
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 136, 170
CviAII CATG 2 cut(s) 198, 369
CviJI RGCY 4 cut(s) 46, 57, 86, 212
CviKI_1 RGCY 4 cut(s) 46, 57, 86, 212
DdeI CTNAG 1 cut(s) 364
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 81
FaeI CATG 2 cut(s) 201, 372
FaiI YATR 5 cut(s) 15, 89, 199, 248, 370
FatI CATG 2 cut(s) 197, 368
FokI GGATG 1 cut(s) 131
FspBI CTAG 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 2 cut(s) 201, 372
HinfI GANTC 2 cut(s) 154, 242
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 151, 295
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 365
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 2 cut(s) 201, 372
Kzo9I GATC 1 cut(s) 284
LpnPI CCDG 6 cut(s) 36, 71, 142, 158, 202, 284
MaeI CTAG 1 cut(s) 158
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MboII GAAGA 1 cut(s) 190
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 57
MunI CAATTG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 131, 365
NdeII GATC 1 cut(s) 284
NlaIII CATG 2 cut(s) 201, 372
NlaIV GGNNCC 1 cut(s) 322
NspI RCATGY 1 cut(s) 201
PciI ACATGT 1 cut(s) 197
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PscI ACATGT 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 251
Sau3AI GATC 1 cut(s) 284
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 48, 55, 214, 221
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 158
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 2 cut(s) 136, 177
TspDTI ATGAA 2 cut(s) 135, 275
TspRI CASTG 2 cut(s) 136, 177
XceI RCATGY 1 cut(s) 201
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.