Rroxscaffold_5G00369440

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
51249133 .. 51253145
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369440.1

Sequence Viewer

Length: 3021 bp
ATGCAGGTTGCATCATTCACAGGGGAGAAGCAAGCTATATTGAACTATAACTCCTCCTTAAGTAGAGCTTACAAGTCTGGTGTGCAAGAGGGTTGGGCATCTGGTTTGGGTCTCGGTGTGGTTATGCTTATGGTATTCTCTACTTTCGCTTTGGCTATATGGTTTGGCGGAATAATGATACTTGAAAAAGGATATAAAGGAGGAGATGTCATCAATGTGATTATGGCTGTGTTGCTTGGCTCAGTGTCGCTTGGGAAAGCATCTCCTTGCATTAGTGCATTTGCTCCTGGACAAGCTGCAGCATATAAGATGTTTGAGACAATTAACAGAAAGCCGGAGATAGATGCATACAATACTAATGGGCGGGTATTACAAGATATTCGTGGAGACATAGAACTGAGGGATGTTTATTTTAGCTACCCCGCAAGAATGGATGAGCAAATATTCCATGGATTTTGTCTCTCTATACCTAGTGGTGGAACTGCTGCTTTGGTTGGACAGAGTGGAAGTGGTAAATCGACTGTAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATTGACGGTATCAATCTCAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTTTTGTTTACCGGTAGCATTAAAGATAACATTGCCTATGGAAAGGATAGTGCAACTACTGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCAGCTAAATTCATAGATTTACTCCCTCAGGGAATAGACACAGTAGTCGGTCAGCATGGAACTCAGCTATCTGGGGGACAAAAGCAAAGAGTTGCTATAGCTAGAGCTATTCTGAAGAACCCAAGAATTCTACTTTTAGATGAAGCCACAAGCGCTCTTGATGCAGAATCCGAACGAGTTGTGCAGGAGGCACTGGATAAAATTATGGTGAACCGGACTACTGTCATTGTAGCCCATCGCCTGAGTACAGTAAGGAATGCTGATACCATTGCTGTCATACATCGAGGAGTAATTGTTGAGCAAGGACCGCATTTAGAGCTAAGTAAGGACCCTGATGGTGCATATCACCAGCTTATAAGGATGCAAGAAAATATCACAGTGTCAAAACATAGTGGTCTAGATGTCCAGGATTCTATCTTACCCTTTGTAAGAGAGGAATCATCTCCAAGAAGAAATAGTATTCCTTCTGCAAGCGGTATGCTTGAAACAGCACCTGTAGAGCCTGATATTCCTGCTACAGTTCTATCAAAAGGGCAGCCAAAGTTTTCACTTCGCCGACTTGCTTACCTGAACAAGCCAGAGATCCCAATTATATTACTAGGGACAATAGCTGCATCAGTCAATGGGGCAGTCTTCCCTGTTTTTGGGAGTTTACTGGCAAGTGTAATCAAGACGTTCTATGAGCCACCTTATGAACTCCGTAAAGATTCAAAGTTTTGGGCATTAATGTTTATTCTTCTTGGAATGACATCTTTGTTGGCTAGTCCAGCAAGAGCATACCTTTTTGCTGTGGCAGGATGTAGGCTAATCAAACGAATCCGAGCCATGTGCTTTGAGAAGGTGGTTTACATGGAAATAAGTTGGTTTGATGAAGCTGAACACTCGAGTGGTGCCATTGGCGCAAGGCTTTCTACAGATGCAGCGTCTTTAAGAGGGCTGGTTGGAGATGCTCTTGGTTTGGTTGTTCAGAATACACCAACTGCAATTGCTGGGCTGATCATTGCTTTTGTTGCAGATTGGCAACTGGCTCTTATAATCCTTGTTATGTTACCTTTATTAGGAGTAAATGGATATATTCAAGTCCAATTCACGAAAGGATTCAGTGCAGATGCAAAGAAAATGTATGAAGATGCGAGCCAAATAGCCAATGATGCTGTGGGGAGTATTCGGACACTTGCTTCCTTCTGTGCTGAAGAGAAGGTGATTGAGTTGTACCAGAGAAAGTGTGAAGGCCCTATTAAGAATGGGATAAGACAAGGGATAGTTACGGGGATAGGTTTTGGATTATCATTCTTCTTACAGTTTTCAGTGTTTGCCTTAAGTTTTTATACTGGAGGTCTACTTGTTTCAGCAGGAAAGACAACATTCTCTGCTCTTTTCCGGGTTTTCTTTGCTCTCACTATGACTTCTATCGGACTTGCTCAGTCGACCTCCCTGGCACCTGATGTAAGTAAAGGAAAGGCTTCTGCTGCTTCAATATTCGCAATACTTGACCGGCAATCAGAAATAGACTCTAGTGATAACTCGGGGATGACTGTAGAACACTTGAAGGGAGAAATTGAATTTCACCATGTTAGTTTCAAGTATCCTAGTAGACCTAGTGTGAAAATTTTCAACAATCTTTGCTTGACCATTAGTCATGGCAAGACAATTGCTCTGGTTGGTGAAAGTGGAAGTGGGAAATCAACAGTGATCTCATTGATTCAAAGATTTTACGACCCTGATTCAGGACACATTACATTGGATGGAATCGAAATCCAGAAACTCCAATTGAAATGGTTGAGACAGCAAATGGGGCTGGTGAGCCAGGAGCCTCTGCTGTTTAACGACACTCTCCGAGCCAACATTGCATATGGAAAGGATGGAGAGGCAACCGAGGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACAAGTTTATTAGTAGTTTACAATATGGTTATGATACAATAGCAGGAGAGCGAGGAGTCCAACTGTCTGGTGGACAGAAGCAAAGAGTAGCTATCGCGCGAGCTACAATGAAGGCACCAAAGATATTACTGCTAGATGAAGCGACCAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCGTTGGACCGAACCACAGTTGTGGTTGCTCATCGGTTATCAACAATCAAGGGTGCAGATTTGATTGCAGTTGTGAAAAATGGAGTCATTGCAGAGAAAGGGAAGCATGAAACTTTGATCAATATCACGGATGGCATTTATGCTTCTTTGGTAGCATTACATGCTACTTCCTCTTCTTAG

Protein Analysis

1006

Amino Acids

108.6

Weight (kDa)

6.81

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 3 - 82 8e-08 ABC transporter transmembrane region
ABC_tran PF00005 152 - 298 8.6e-33 ABC transporter
ABC_membrane PF00664 446 - 717 1.5e-54 ABC transporter transmembrane region
ABC_tran PF00005 786 - 935 7.3e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1097, 1775
AasI GACNNNNNNGTC 1 cut(s) 785
AccB1I GGYRCC 3 cut(s) 1631, 2179, 2770
AccB7I CCANNNNNTGG 1 cut(s) 560
AccI GTMKAC 3 cut(s) 2080, 2168, 2335
AccII CGCG 2 cut(s) 2753, 2755
AciI CCGC 5 cut(s) 168, 364, 423, 1049, 1215
AclWI GGATC 2 cut(s) 620, 1318
AcsI RAATTY 4 cut(s) 749, 867, 2303, 2349
AcuI CTGAAG 3 cut(s) 729, 875, 1953
AfaI GTAC 2 cut(s) 988, 1955
AfeI AGCGCT 1 cut(s) 895
AfiI CCNNNNNNNGG 5 cut(s) 476, 560, 1385, 1799, 2468
AflII CTTAAG 2 cut(s) 58, 2059
AgeI ACCGGT 1 cut(s) 659
AhdI GACNNNNNGTC 1 cut(s) 2376
AjnI CCWGG 5 cut(s) 286, 639, 1146, 2175, 2547
AleI CACNNNNGTG 2 cut(s) 1626, 2861
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
Alw21I GWGCWC 1 cut(s) 2809
Alw26I GTCTC 5 cut(s) 116, 311, 381, 464, 2518
AlwI GGATC 2 cut(s) 620, 1318
AlwNI CAGNNNCTG 1 cut(s) 1235
Ama87I CYCGRG 2 cut(s) 1624, 2266
Aor51HI AGCGCT 1 cut(s) 895
AoxI GGCC 2 cut(s) 628, 1972
ApoI RAATTY 4 cut(s) 749, 867, 2303, 2349
AseI ATTAAT 1 cut(s) 1466
AsiGI ACCGGT 1 cut(s) 659
Asp700I GAANNNNTTC 3 cut(s) 1838, 2203, 2351
AspLEI GCGC 3 cut(s) 896, 1643, 2755
AspS9I GGNCC 4 cut(s) 1046, 1069, 1973, 2848
AsuC2I CCSGG 1 cut(s) 2123
AsuHPI GGTGA 7 cut(s) 575, 961, 1079, 1954, 2300, 2417, 2554
AvaI CYCGRG 2 cut(s) 1624, 2266
AvaII GGWCC 3 cut(s) 1046, 1069, 2848
AxyI CCTNAGG 1 cut(s) 768
BanI GGYRCC 3 cut(s) 1631, 2179, 2770
BarI GAAGNNNNNNTAC 2 cut(s) 1571, 1603
BbsI GAAGAC 1 cut(s) 1366
Bbv12I GWGCWC 1 cut(s) 2809
BccI CCATC 5 cut(s) 984, 1070, 2480, 2597, 2966
BcgI CGANNNNNNTGC 2 cut(s) 1551, 1585
BciT130I CCWGG 5 cut(s) 288, 641, 1148, 2177, 2549
BciVI GTATCC 1 cut(s) 2337
BclI TGATCA 2 cut(s) 1737, 2958
BcnI CCSGG 1 cut(s) 2123
BcoDI GTCTC 5 cut(s) 116, 311, 381, 464, 2518
BfaI CTAG 9 cut(s) 471, 843, 1139, 1340, 1503, 2256, 2331, 2340, 2789
BfmI CTRYAG 7 cut(s) 297, 837, 1236, 1257, 1653, 2277, 2634
BfoI RGCGCY 1 cut(s) 897
BfrI CTTAAG 2 cut(s) 58, 2059
BfuI GTATCC 1 cut(s) 2337
BlpI GCTNAGC 1 cut(s) 729
Bme1390I CCNGG 6 cut(s) 288, 641, 1148, 2123, 2177, 2549
Bme18I GGWCC 3 cut(s) 1046, 1069, 2848
BmeRI GACNNNNNGTC 1 cut(s) 2376
BmeT110I CYCGRG 2 cut(s) 1624, 2266
BmgT120I GGNCC 4 cut(s) 1046, 1069, 1973, 2848
BmiI GGNNCC 6 cut(s) 645, 1071, 1633, 2181, 2553, 2772
BmrFI CCNGG 6 cut(s) 288, 641, 1148, 2123, 2177, 2549
BoxI GACNNNNGTC 1 cut(s) 962
BpiI GAAGAC 1 cut(s) 1366
BpmI CTGGAG 1 cut(s) 2094
Bpu1102I GCTNAGC 1 cut(s) 729
BpuMI CCSGG 1 cut(s) 2123
BsaBI GATNNNNATC 1 cut(s) 2963
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 448, 2175, 2616
BsaWI WCCGGW 2 cut(s) 659, 954
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 192, 222, 1020, 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 476, 560, 1385, 1799, 2468
Bse118I RCCGGY 2 cut(s) 659, 2235
Bse1I ACTGG 7 cut(s) 647, 939, 1401, 1770, 2077, 2649, 2802
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 5 cut(s) 678, 1008, 1740, 2586, 2928
Bse8I GATNNNNATC 1 cut(s) 2963
BseBI CCWGG 5 cut(s) 288, 641, 1148, 2177, 2549
BseDI CCNNGG 3 cut(s) 448, 2175, 2616
BseGI GGATG 8 cut(s) 409, 439, 1107, 1544, 2277, 2491, 2608, 2977
BseJI GATNNNNATC 1 cut(s) 2963
BseLI CCNNNNNNNGG 5 cut(s) 476, 560, 1385, 1799, 2468
BseMI GCAATG 5 cut(s) 678, 1008, 1740, 2586, 2928
BseMII CTCAG 7 cut(s) 255, 389, 720, 782, 818, 974, 2177
BseNI ACTGG 7 cut(s) 647, 939, 1401, 1770, 2077, 2649, 2802
BseRI GAGGAG 4 cut(s) 43, 216, 1041, 2724
BseYI CCCAGC 1 cut(s) 1730
BsgI GTGCAG 3 cut(s) 944, 1866, 2916
Bsh1236I CGCG 2 cut(s) 2753, 2755
BshFI GGCC 2 cut(s) 630, 1974
BshNI GGYRCC 3 cut(s) 1631, 2179, 2770
BshTI ACCGGT 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 2809
BsiHKCI CYCGRG 2 cut(s) 1624, 2266
BsiSI CCGG 5 cut(s) 335, 660, 955, 2122, 2236
BslFI GGGAC 2 cut(s) 831, 1357
BslI CCNNNNNNNGG 5 cut(s) 476, 560, 1385, 1799, 2468
BsmAI GTCTC 5 cut(s) 116, 311, 381, 464, 2518
BsmFI GGGAC 2 cut(s) 831, 1357
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 2 cut(s) 630, 1974
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 1624, 2266
Bsp1286I GDGCHC 1 cut(s) 2809
Bsp143I GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
Bsp1720I GCTNAGC 1 cut(s) 729
Bsp19I CCATGG 1 cut(s) 448
BspACI CCGC 5 cut(s) 168, 364, 423, 1049, 1215
BspANI GGCC 2 cut(s) 630, 1974
BspCNI CTCAG 7 cut(s) 254, 390, 721, 781, 817, 975, 2176
BspFNI CGCG 2 cut(s) 2753, 2755
BspLI GGNNCC 6 cut(s) 645, 1071, 1633, 2181, 2553, 2772
BspMAI CTGCAG 2 cut(s) 301, 2638
BspPI GGATC 2 cut(s) 620, 1318
BspT107I GGYRCC 3 cut(s) 1631, 2179, 2770
BspTI CTTAAG 2 cut(s) 58, 2059
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 5 cut(s) 678, 1008, 1740, 2586, 2928
BsrFI RCCGGY 2 cut(s) 659, 2235
BsrI ACTGG 7 cut(s) 647, 939, 1401, 1770, 2077, 2649, 2802
BssAI RCCGGY 2 cut(s) 659, 2235
BssECI CCNNGG 3 cut(s) 448, 2175, 2616
BssMI GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 5 cut(s) 288, 641, 1148, 2177, 2549
Bst6I CTCTTC 1 cut(s) 1929
BstAFI CTTAAG 2 cut(s) 58, 2059
BstAPI GCANNNNNTGC 1 cut(s) 3002
BstC8I GCNNGC 5 cut(s) 33, 735, 1213, 1876, 2757
BstDEI CTNAG 9 cut(s) 241, 398, 729, 768, 804, 983, 1061, 2163, 3018
BstDSI CCRYGG 1 cut(s) 448
BstENI CCTNNNNNAGG 2 cut(s) 1797, 2466
BstF5I GGATG 8 cut(s) 409, 439, 1107, 1544, 2277, 2491, 2608, 2977
BstFNI CGCG 2 cut(s) 2753, 2755
BstH2I RGCGCY 1 cut(s) 897
BstHHI GCGC 3 cut(s) 896, 1643, 2755
BstKTI GATC 5 cut(s) 615, 1326, 1740, 2436, 2961
BstMAI GTCTC 5 cut(s) 116, 311, 381, 464, 2518
BstMBI GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
BstNI CCWGG 5 cut(s) 288, 641, 1148, 2177, 2549
BstNSI RCATGY 1 cut(s) 3005
BstPAI GACNNNNGTC 1 cut(s) 962
BstSCI CCNGG 6 cut(s) 286, 639, 1146, 2121, 2175, 2547
BstSFI CTRYAG 7 cut(s) 297, 837, 1236, 1257, 1653, 2277, 2634
BstUI CGCG 2 cut(s) 2753, 2755
BstV2I GAAGAC 1 cut(s) 1366
BstX2I RGATCY 1 cut(s) 1323
BstXI CCANNNNNNTGG 2 cut(s) 2723, 2863
BstYI RGATCY 1 cut(s) 1323
Bsu36I CCTNAGG 1 cut(s) 768
BsuI GTATCC 1 cut(s) 2337
BsuRI GGCC 2 cut(s) 630, 1974
BtgI CCRYGG 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 962
BtsCI GGATG 8 cut(s) 409, 439, 1107, 1544, 2277, 2491, 2608, 2977
BtsIMutI CAGTG 7 cut(s) 249, 932, 1125, 1849, 2055, 2436, 2809
Cac8I GCNNGC 5 cut(s) 33, 735, 1213, 1876, 2757
CaiI CAGNNNCTG 1 cut(s) 1235
CfoI GCGC 3 cut(s) 896, 1643, 2755
Cfr10I RCCGGY 2 cut(s) 659, 2235
Cfr13I GGNCC 4 cut(s) 1046, 1069, 1973, 2848
CseI GACGC 1 cut(s) 1653
Csp6I GTAC 2 cut(s) 987, 1954
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 8 cut(s) 449, 797, 1567, 1591, 2312, 2381, 2948, 3002
CviQI GTAC 2 cut(s) 987, 1954
DdeI CTNAG 9 cut(s) 241, 398, 729, 768, 804, 983, 1061, 2163, 3018
DpnI GATC 5 cut(s) 614, 1325, 1739, 2435, 2960
DpnII GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
DrdI GACNNNNNNGTC 1 cut(s) 785
DriI GACNNNNNGTC 1 cut(s) 2376
DseDI GACNNNNNNGTC 1 cut(s) 785
Eam1104I CTCTTC 1 cut(s) 1929
Eam1105I GACNNNNNGTC 1 cut(s) 2376
EarI CTCTTC 1 cut(s) 1929
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 448
Eco147I AGGCCT 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 3 cut(s) 1046, 1069, 2848
Eco47III AGCGCT 1 cut(s) 895
Eco57I CTGAAG 3 cut(s) 729, 875, 1953
Eco81I CCTNAGG 1 cut(s) 768
Eco88I CYCGRG 2 cut(s) 1624, 2266
EcoNI CCTNNNNNAGG 2 cut(s) 1797, 2466
EcoO109I RGGNCCY 2 cut(s) 1069, 1973
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 5 cut(s) 286, 639, 1146, 2175, 2547
EcoT14I CCWWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 8 cut(s) 452, 800, 1570, 1594, 2315, 2384, 2951, 3005
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 2 cut(s) 831, 1357
FatI CATG 8 cut(s) 448, 796, 1566, 1590, 2311, 2380, 2947, 3001
FauI CCCGC 2 cut(s) 357, 430
FauNDI CATATG 1 cut(s) 2593
FbaI TGATCA 2 cut(s) 1737, 2958
FblI GTMKAC 3 cut(s) 2080, 2168, 2335
FokI GGATG 8 cut(s) 416, 446, 1114, 1551, 2284, 2498, 2615, 2984
FspBI CTAG 9 cut(s) 471, 843, 1139, 1340, 1503, 2256, 2331, 2340, 2789
GlaI GCGC 3 cut(s) 895, 1642, 2754
GsaI CCCAGC 1 cut(s) 1734
GsuI CTGGAG 1 cut(s) 2094
HaeII RGCGCY 1 cut(s) 897
HaeIII GGCC 2 cut(s) 630, 1974
HapII CCGG 5 cut(s) 335, 660, 955, 2122, 2236
HgaI GACGC 1 cut(s) 1653
HhaI GCGC 3 cut(s) 896, 1643, 2755
Hin1II CATG 8 cut(s) 452, 800, 1570, 1594, 2315, 2384, 2951, 3005
Hin6I GCGC 3 cut(s) 894, 1641, 2753
HinP1I GCGC 3 cut(s) 894, 1641, 2753
HincII GTYRAC 1 cut(s) 2169
HindII GTYRAC 1 cut(s) 2169
HpaII CCGG 5 cut(s) 335, 660, 955, 2122, 2236
HphI GGTGA 7 cut(s) 575, 961, 1079, 1954, 2300, 2417, 2554
Hpy166II GTNNAC 9 cut(s) 657, 952, 1394, 1588, 2081, 2169, 2336, 2675, 2729
Hpy188III TCNNGA 8 cut(s) 899, 1139, 1411, 1831, 2469, 2500, 2810, 2837
Hpy8I GTNNAC 9 cut(s) 657, 952, 1394, 1588, 2081, 2169, 2336, 2675, 2729
HpyAV CCTTC 7 cut(s) 1215, 1573, 1933, 1933, 1964, 2284, 2761
HpyCH4IV ACGT 1 cut(s) 1415
HpyF3I CTNAG 9 cut(s) 241, 398, 729, 768, 804, 983, 1061, 2163, 3018
HpySE526I ACGT 1 cut(s) 1415
Hsp92II CATG 8 cut(s) 452, 800, 1570, 1594, 2315, 2384, 2951, 3005
HspAI GCGC 3 cut(s) 894, 1641, 2753
Ksp22I TGATCA 2 cut(s) 1737, 2958
Kzo9I GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
LmnI GCTCC 2 cut(s) 289, 2551
MaeI CTAG 9 cut(s) 471, 843, 1139, 1340, 1503, 2256, 2331, 2340, 2789
MaeII ACGT 1 cut(s) 1415
MaeIII GTNAC 2 cut(s) 1788, 2005
MalI GATC 5 cut(s) 614, 1325, 1739, 2435, 2960
MboI GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
MboII GAAGA 9 cut(s) 722, 868, 1203, 1366, 1469, 1880, 1946, 2026, 3006
MfeI CAATTG 3 cut(s) 1725, 2391, 2510
MflI RGATCY 1 cut(s) 1323
MhlI GDGCHC 1 cut(s) 2809
MlyI GAGTC 3 cut(s) 2246, 2721, 2934
MmeI TCCRAC 4 cut(s) 475, 1663, 2740, 2826
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 3 cut(s) 1838, 2203, 2351
MseI TTAA 8 cut(s) 59, 324, 669, 1466, 1670, 1980, 2060, 2565
MslI CAYNNNNRTG 3 cut(s) 215, 1626, 2861
MspA1I CMGCKG 1 cut(s) 604
MspCI CTTAAG 2 cut(s) 58, 2059
MspI CCGG 5 cut(s) 335, 660, 955, 2122, 2236
MspR9I CCNGG 6 cut(s) 288, 641, 1148, 2123, 2177, 2549
MunI CAATTG 3 cut(s) 1725, 2391, 2510
Mva1269I GAATGC 1 cut(s) 1003
MvaI CCWGG 5 cut(s) 288, 641, 1148, 2177, 2549
MvnI CGCG 2 cut(s) 2753, 2755
NciI CCSGG 1 cut(s) 2123
NcoI CCATGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 2593
NdeII GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
NlaIII CATG 8 cut(s) 452, 800, 1570, 1594, 2315, 2384, 2951, 3005
NlaIV GGNNCC 6 cut(s) 645, 1071, 1633, 2181, 2553, 2772
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 3005
OliI CACNNNNGTG 2 cut(s) 1626, 2861
PaeR7I CTCGAG 1 cut(s) 1624
PceI AGGCCT 1 cut(s) 630
PctI GAATGC 1 cut(s) 1003
PdmI GAANNNNTTC 3 cut(s) 1838, 2203, 2351
PflMI CCANNNNNTGG 1 cut(s) 560
PfoI TCCNGGA 2 cut(s) 286, 1146
PinAI ACCGGT 1 cut(s) 659
PleI GAGTC 3 cut(s) 2246, 2720, 2933
PpsI GAGTC 3 cut(s) 2246, 2720, 2933
PpuMI RGGWCCY 1 cut(s) 1069
PshAI GACNNNNGTC 1 cut(s) 962
PshBI ATTAAT 1 cut(s) 1466
PsiI TTATAA 2 cut(s) 1097, 1775
Psp5II RGGWCCY 1 cut(s) 1069
Psp6I CCWGG 5 cut(s) 286, 639, 1146, 2175, 2547
PspFI CCCAGC 1 cut(s) 1730
PspGI CCWGG 5 cut(s) 286, 639, 1146, 2175, 2547
PspN4I GGNNCC 6 cut(s) 645, 1071, 1633, 2181, 2553, 2772
PspPI GGNCC 4 cut(s) 1046, 1069, 1973, 2848
PspPPI RGGWCCY 1 cut(s) 1069
PspXI VCTCGAGB 1 cut(s) 1624
PstI CTGCAG 2 cut(s) 301, 2638
PstNI CAGNNNCTG 1 cut(s) 1235
PsuI RGATCY 1 cut(s) 1323
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 2 cut(s) 988, 1955
RsaNI GTAC 2 cut(s) 987, 1954
RseI CAYNNNNRTG 3 cut(s) 215, 1626, 2861
SalI GTCGAC 1 cut(s) 2167
SaqAI TTAA 8 cut(s) 59, 324, 669, 1466, 1670, 1980, 2060, 2565
Sau3AI GATC 5 cut(s) 612, 1323, 1737, 2433, 2958
Sau96I GGNCC 4 cut(s) 1046, 1069, 1973, 2848
SchI GAGTC 3 cut(s) 2246, 2721, 2934
ScrFI CCNGG 6 cut(s) 288, 641, 1148, 2123, 2177, 2549
SduI GDGCHC 1 cut(s) 2809
SfcI CTRYAG 7 cut(s) 297, 837, 1236, 1257, 1653, 2277, 2634
Sfr274I CTCGAG 1 cut(s) 1624
SinI GGWCC 3 cut(s) 1046, 1069, 2848
SlaI CTCGAG 1 cut(s) 1624
SmiMI CAYNNNNRTG 3 cut(s) 215, 1626, 2861
SmlI CTYRAG 3 cut(s) 58, 1624, 2059
SmoI CTYRAG 3 cut(s) 58, 1624, 2059
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 5 cut(s) 168, 364, 423, 1049, 1215
SspI AATATT 2 cut(s) 444, 2220
SspMI CTAG 9 cut(s) 471, 843, 1139, 1340, 1503, 2256, 2331, 2340, 2789
StuI AGGCCT 1 cut(s) 630
StyD4I CCNGG 6 cut(s) 286, 639, 1146, 2121, 2175, 2547
StyI CCWWGG 1 cut(s) 448
TaiI ACGT 1 cut(s) 1418
TaqI TCGA 5 cut(s) 518, 1024, 1625, 2168, 2493
TaqII GACCGA 2 cut(s) 779, 2865
TatI WGTACW 1 cut(s) 986
Tru1I TTAA 8 cut(s) 59, 324, 669, 1466, 1670, 1980, 2060, 2565
Tru9I TTAA 8 cut(s) 59, 324, 669, 1466, 1670, 1980, 2060, 2565
TscAI CASTG 7 cut(s) 249, 939, 1125, 1849, 2055, 2436, 2809
TspDTI ATGAA 8 cut(s) 742, 897, 1449, 1626, 1881, 2780, 2808, 2964
TspGWI ACGGA 2 cut(s) 1430, 2984
TspRI CASTG 7 cut(s) 249, 939, 1125, 1849, 2055, 2436, 2809
Van91I CCANNNNNTGG 1 cut(s) 560
Vha464I CTTAAG 2 cut(s) 58, 2059
VpaK11BI GGWCC 3 cut(s) 1046, 1069, 2848
VspI ATTAAT 1 cut(s) 1466
XagI CCTNNNNNAGG 2 cut(s) 1797, 2466
XapI RAATTY 4 cut(s) 749, 867, 2303, 2349
XbaI TCTAGA 1 cut(s) 1138
XceI RCATGY 1 cut(s) 3005
XcmI CCANNNNNNNNNTGG 2 cut(s) 1894, 2723
XhoI CTCGAG 1 cut(s) 1624
XmiI GTMKAC 3 cut(s) 2080, 2168, 2335
XmnI GAANNNNTTC 3 cut(s) 1838, 2203, 2351
XspI CTAG 9 cut(s) 471, 843, 1139, 1340, 1503, 2256, 2331, 2340, 2789
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.