Rh2DG482300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000116
Physical Location & Seq
Reverse (-)
69700935 .. 69710130
9196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG482300.1

Sequence Viewer

Length: 489 bp
ATGTTAATTCACTTGCTGGAGCTACCTGAAAGGAAGATCTTCACCTTCTTGATATATAGTCCATTAGTCAGTTTCAACAAGATCGTAATCTCCGGTGACGCAATTGAAGAGGAAGCGGCTGGCGAAGCTTTGCATTCCGATTGTATCGACGGGATTTCGGGCTGCTCCGGGGACACCGTCTACAGTAGTGTGGAGAAAGCTGGTGGAGGAAGATTGAGAAGTCTTATGGGGAGACATGAGAATTGGAGAGCGGATTGGGCAAGGATGTTGCTGTTAAGGTATTCTTCAAGCAAGAATATCCAGATGATGTGCTTCTCTCTTTTAGACAAGAACACTTCTTGGGCTGACAGATGCCTCTCATCTCAATTTTTCTTACTGGAAACGACGTGTTCAAATGGCTTTGGATATAGTACAAGGCATGAATTATCTTCATCATTTCAACCCCCTTATTATTCATCGAGATCTGAAGTCTTCAAATCCCCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.22

Weight (kDa)

6.07

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 180
AciI CCGC 2 cut(s) 116, 251
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 6 cut(s) 76, 107, 288, 393, 440, 475
AjiI CACGTC 1 cut(s) 387
AluBI AGCT 3 cut(s) 22, 128, 200
AluI AGCT 3 cut(s) 22, 128, 200
Alw26I GTCTC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 34, 107
BbsI GAAGAC 1 cut(s) 463
BbvI GCAGC 1 cut(s) 149
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 181
BglII AGATCT 2 cut(s) 36, 461
BisI GCNGC 2 cut(s) 117, 163
BlsI GCNGC 2 cut(s) 118, 164
Bme1390I CCNGG 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 387
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 463
BpmI CTGGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 86
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 93, 168
BslFI GGGAC 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 36, 81, 461
BspACI CCGC 2 cut(s) 116, 251
BsrBI CCGCTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 36, 81, 461
Bst4CI ACNGT 2 cut(s) 178, 185
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 3 cut(s) 39, 84, 464
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 36, 81, 461
BstMWI GCNNNNNNNGC 2 cut(s) 125, 257
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 463
BstX2I RGATCY 2 cut(s) 36, 461
BstYI RGATCY 2 cut(s) 36, 461
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 121
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 411
CviAII CATG 2 cut(s) 236, 419
CviJI RGCY 7 cut(s) 22, 119, 128, 162, 200, 344, 399
CviKI_1 RGCY 7 cut(s) 22, 119, 128, 162, 200, 344, 399
CviQI GTAC 1 cut(s) 411
DpnI GATC 3 cut(s) 38, 83, 463
DpnII GATC 3 cut(s) 36, 81, 461
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 486
FaeI CATG 2 cut(s) 239, 422
FaiI YATR 6 cut(s) 55, 57, 227, 237, 408, 420
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 235, 418
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 117, 163
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 117, 163
FspBI CTAG 1 cut(s) 483
GluI GCNGC 2 cut(s) 117, 163
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 2 cut(s) 93, 168
HgaI GACGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 239, 422
HindIII AAGCTT 1 cut(s) 126
HpaII CCGG 2 cut(s) 93, 168
HphI GGTGA 2 cut(s) 34, 107
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 139, 466
Hpy188III TCNNGA 3 cut(s) 49, 301, 459
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 152, 388
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 178, 185
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 257
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 2 cut(s) 239, 422
Kzo9I GATC 3 cut(s) 36, 81, 461
LmnI GCTCC 2 cut(s) 19, 170
LpnPI CCDG 8 cut(s) 2, 39, 105, 106, 181, 186, 314, 362
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 38, 83, 463
MbiI CCGCTC 1 cut(s) 251
MboI GATC 3 cut(s) 36, 81, 461
MboII GAAGA 7 cut(s) 31, 46, 119, 222, 276, 420, 463
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 2 cut(s) 36, 461
MluCI AATT 5 cut(s) 6, 102, 241, 365, 422
MnlI CCTC 3 cut(s) 103, 200, 365
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 2 cut(s) 5, 275
MspI CCGG 2 cut(s) 93, 168
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 125, 257
NciI CCSGG 1 cut(s) 169
NdeII GATC 3 cut(s) 36, 81, 461
NlaIII CATG 2 cut(s) 239, 422
NmuCI GTSAC 1 cut(s) 95
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 118, 164
PsuI RGATCY 2 cut(s) 36, 461
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 5, 275
SatI GCNGC 2 cut(s) 117, 163
Sau3AI GATC 3 cut(s) 36, 81, 461
ScrFI CCNGG 1 cut(s) 169
SetI ASST 7 cut(s) 24, 28, 47, 130, 202, 281, 389
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 181
Sse9I AATT 5 cut(s) 6, 102, 241, 365, 422
SsiI CCGC 2 cut(s) 116, 251
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 178, 185
TaiI ACGT 1 cut(s) 389
TaqI TCGA 2 cut(s) 147, 458
TasI AATT 5 cut(s) 6, 102, 241, 365, 422
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 5, 275
Tru9I TTAA 2 cut(s) 5, 275
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 420, 435, 444
Tth111I GACNNNGTC 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.