FvH4_6g00641

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000116
Physical Location & Seq
Reverse (-)
372741 .. 373227
487 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00641.t1

Sequence Viewer

Length: 399 bp
ATGTATATGCAGGGTTATGACACCATCGTGGGGGAACGAGGAGTCCAATTGTCAGGTGGACAGAAGCAACGTGTAGCGATTGCGCGTGCTATAATTAAAAGCCCCAGGATCGTACTACTAGATGAGGCTACTAGCGCACTAGATGCTGAATCTGAGAGAGTGGTACAAGATGCATTGGACCTTGTCATGCTAAACCGGACAACAGTTGTGGTGGCACATAGATTATCTACAATCAGAAATGCAAACGTTATTGCAGTTGTGAAAGACGGAGCTGTAGTAGAGAAAGGAAAGCATGAGACTTTGATAAGCATCAAGGATGGTTTCTATGCATCCTTAGTTGCATTACACAATACACACCAAGACTATAGCATCTATGCTTCTCTTACAAGTATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

133

Amino Acids

14.37

Weight (kDa)

6.91

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 7 - 45 1.1e-10 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 85
AclI AACGTT 1 cut(s) 246
AclWI GGATC 1 cut(s) 116
AfaI GTAC 2 cut(s) 114, 165
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 70
AjnI CCWGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 26
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 116
AspLEI GCGC 2 cut(s) 85, 137
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BccI CCATC 2 cut(s) 32, 311
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 119, 132, 140
BfmI CTRYAG 2 cut(s) 273, 364
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 5 cut(s) 133, 160, 318, 338, 378
BsaBI GATNNNNATC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 308
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 322, 329
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 85
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 85
BspPI GGATC 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 153, 334
BstF5I GGATG 2 cut(s) 322, 329
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 2 cut(s) 85, 137
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 2 cut(s) 273, 364
BstUI CGCG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 322, 329
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 2 cut(s) 85, 137
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 113, 164
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 2 cut(s) 187, 293
CviJI RGCY 3 cut(s) 102, 128, 272
CviKI_1 RGCY 3 cut(s) 102, 128, 272
CviQI GTAC 2 cut(s) 113, 164
DdeI CTNAG 2 cut(s) 153, 334
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 104
EcoT22I ATGCAT 2 cut(s) 175, 331
FaeI CATG 2 cut(s) 190, 296
FatI CATG 2 cut(s) 186, 292
FokI GGATG 2 cut(s) 316, 329
FspBI CTAG 3 cut(s) 119, 132, 140
GlaI GCGC 2 cut(s) 84, 136
HapII CCGG 1 cut(s) 196
HhaI GCGC 2 cut(s) 85, 137
Hin1II CATG 2 cut(s) 190, 296
Hin6I GCGC 2 cut(s) 83, 135
HinP1I GCGC 2 cut(s) 83, 135
HinfI GANTC 2 cut(s) 42, 149
HpaII CCGG 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 154, 236
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 70, 246
HpyCH4V TGCA 6 cut(s) 10, 173, 242, 254, 329, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 2 cut(s) 153, 334
HpySE526I ACGT 2 cut(s) 70, 246
Hsp92II CATG 2 cut(s) 190, 296
HspAI GCGC 2 cut(s) 83, 135
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 4 cut(s) 39, 91, 118, 209
LweI GCATC 5 cut(s) 133, 160, 318, 338, 378
MaeI CTAG 3 cut(s) 119, 132, 140
MaeII ACGT 2 cut(s) 70, 246
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MfeI CAATTG 1 cut(s) 47
MluCI AATT 2 cut(s) 47, 93
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 2 cut(s) 32, 118
Mph1103I ATGCAT 2 cut(s) 175, 331
MseI TTAA 2 cut(s) 96, 397
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 190, 296
NsiI ATGCAT 2 cut(s) 175, 331
OliI CACNNNNGTG 1 cut(s) 26
PfeI GAWTC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 2 cut(s) 114, 165
RsaNI GTAC 2 cut(s) 113, 164
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 96, 397
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 106
SetI ASST 5 cut(s) 58, 73, 183, 249, 274
SfaNI GCATC 5 cut(s) 133, 160, 318, 338, 378
SfcI CTRYAG 2 cut(s) 273, 364
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 47, 93
SspMI CTAG 3 cut(s) 119, 132, 140
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 2 cut(s) 73, 249
TasI AATT 2 cut(s) 47, 93
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 96, 397
Tru9I TTAA 2 cut(s) 96, 397
TspGWI ACGGA 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XspI CTAG 3 cut(s) 119, 132, 140
Zsp2I ATGCAT 2 cut(s) 175, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.