Rw4G023670

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
49393459 .. 49399201
5743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023670.1

Sequence Viewer

Length: 3882 bp
ATGGCTGATCAGGAAAACCATATGGATGGAGATCATGATGTAATTGCAGAGCCAGGCACGGCATCAGCAGTGGCCGCAGATTCGAAGAATAATAACCAAGAGGATACAGGCAAGAGCAAGGAGGATGCAACCGGTTCAGTACCATATTACAAGCTCTTCTCCTTTGCTGATTCTATGGATTACCTGTTAATGTCTGTTGGTACGATCAGTGCTATTGGAAACGGATTATGTATGCCTCTAATGACTGTGATCATGGGAGAAGTGATTAACTCTTTCGGAGAAACTCCGAATACCAAAAAAGTGGTTGGTATAGTTTCCAAGGTTGCTCTAAAATATGTTTACTTGGCTTTGGGGGCTGCAGCAGCTGCATTTTTACGAAGCACTTCAGAGATGTCTTGCTGGGTGATCACCGGAGAGAGACAGGCAGCACGAATAAGAAGTTTATACTTGAAGACAATCCTAAGGCAAGATGTTGGTTTTTTCGATAAAGAAGTTACCACCGGGGAAATAGTTGGAAGAATTTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGCGAGAAAGTAGGAAGTATTATCCAGTTAGTTGCAACATTCATAGGAGGCTTTGTCATAGCATTTGCTAAGGGATGGCGTCTCACCCTTGTCATGCTGACCTCTATTCCCCCTCTTGTTTTCTCCGGTGCTGTATTGAGCTTCACTGTAAAGAGGATGACTACTCGTGGACAAGCTGCTTATTCAGTGGGAGCAACTGTGGTAGAGCAGACAATCGGTTCAATCAGAACTGTTGCATCATTTACAGGTGAGAAGCAAGCTGTAACAAAGTACAACAACTCATTAGACAAAGCTTACAAGTCTGGAGTGCAAGAAGGTTTGGCATCAGGGTTTGGTCTTGGCGCGATTGTGCTTATTGTATTCTGCAGCTATGCTTTGGCTGTATGGTATGGCGGAAAAATGATACTTGAACAAGGATATAAAGCAGGAGATGTCATGAATGTGATATTTGCAGTATTAACTGGCTCCTTCTCTCTTGGACAAGCATCTCCATGCATAAGTGCATTTTCGGCTGGACAAGCTGCAGCTTACAAGATGTTTGAAACAATTAACAGAAAGCCAGAGATAGATGCTTCTGATACTAATGGGAAGCAATTAGAAGACATCCGAGGAGAAATAGAATTTAGGGATGTTTATTTTAGTTATCCTGCAAGACCAGATGAACAAATATTCCAAGGATTCTCACTCTCAATATCTAGTGGTGCAACTGCTGCTCTGGTAGGACAGAGCGGAAGTGGTAAATCTACTATAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCAGGCGAAGTTCTTATCGATGGCATTAATCTCAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGGCTTGTCAGCCAGGAACCTGTTTTGTTTACTTGCAGCATTAAAGATAATATTACCTATGGGAAGGATGGAGCAACTTTTGAAGAAATAAAGGCTGCTGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAATTACCTCAGGGACTAGATACAATGGTTGGGGAGCATGGAACTCAGCTATCTGGGGGCCAAAAGCAAAGAGTTGCCATAGCTAGAGCAATCCTTAAGAACCCGAGAATTCTGCTTTTAGATGAAGCTACAAGTGCTCTTGATGCAGAATCTGAGAGGGTTGTGCAAGAGGCATTGGACAGAGTTATGGTTAGCCGGACTACTGTGATTGTAGCCCACCGCTTGAGCACAGTGAGGAATGCTGATACGATTGCAGTTATAAATCGCGGAAAAATTGTTGAACAAGGACCACATTCTGAACTAGTTAAGGTTCCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAACAAATTAGCAGTGTGTCAGAACAGAACTCTCAAAATGTTCAGGAAATTAGGCCATTGTCAAACTCTAGAAGAGATAGAAGTCCAAGACTTTCTCCCTTACAATCCATAAGTCGAGGATCATCTGGAAATACTAGTCCCCACTCATTCTCAATCTCACATGGTGCGCCTACTGTAATAGGTGTGCTTGAAATAGCACCAACTGAACCTCAAATTCTAGCTGCATCATCAGAACTGCATCCAGAAGTCTCACTTAGCCGCCTAGCTTACCTGAACAAGCCAGAAATCCCAGTGCTAATTCTAGGTACTATAGCTGCAGCAATTAATGGGGTAATATTGCCTATTTTCGGGGTGTTAATATCCAGTATAATCAAGACCTTCTTTGAGCCACCTCATCAACTTCAAAAGGATTCCAAGTTTTGGTCATTAATCTTTATTCTTCTTGGAGTGGCATCTCTCTTGGCATATCCATTGAAAGCATACTTTTTTGCTGTGGCTGGGGGCAAGTTAATAAGACGAGTTCGATCACTATGCTTTGAGAGGGTGATTCACATGGAAGTAAGTTGGTTCGATGAAGCTGAGCACTCAAGTGGTGCAATTGGTGCAAGGCTTTCTGCAGATGCTGCCTCTCTCCGAGGGCTGGTTGGTGATGCTCTAGGTTTGGCTGTTTTGAATGGATCAACTGCAATTGCTGGATTGGTTATTGCTTTTGTGGCAAATTGGCAACTTGCTCTTATAATCCTTATTCTCCTACCTCTACTAGGAATAAGTGGATATTTCCAGGTCCAGTTCCTAAAAGGATTAAGCGCTAGTGCAAAGAAAATGTATGAAGACGCAAGCCAAGTAGCCACAGATGCTGTGGGGAATATTAGAACAATTGCTTCATTTTGTGCTGAAGAAAAGGTTATCAAGTTGTACCACACAAAATGTGAAGGTCCTATCAAGGCAGGGATAAGACAAGGGATAGTCAGTGGGATAGGCTTTGGACTATCGTTCTTCTTGCTCTTCTCTGTATATGCATGTAGTTTCTATGCTGGTGCTCAACTTGTAGGAGCAGGCAAGACAACATTCCCTGATGTTTTTCGGGTTTTCTTTGCTCTAACTATGACAGCGATAGCATTGTCTCACCAGGGTTCCGTTGCCCCTGATTCAATTAAAGGAAAGAGCGCTGCCGCTTCTATATTTGCACTTCTTGACCAAAAATCAAAAAAAGATTCTAGTGATGACTCTGGAACAACCATTGTAAATGTGAAAGGAGAAATCCAATTTCGTCATGTTAGTTTCAAGTATCCTAATAGACCTAACGTGCCAATCTTCCGGGATCTTTGCTTGACCATTCACCATGGCAAGACACTTGCTCTGGTGGGAGAAAGTGGAAGTGGAAAATCGACAGTGATCTTATTGCTTCAGAGATTTTATGACCCTGATTCAGGTCATATTACATTAGATAGTGTTGAAATGAAAACTTTACAGTTGAAGTGGCTGAGACAGCAAATGGGGTTGGTGAGCCAGGAGCCTCTATTGTTTAATGACACTATAAGAGCCAACATTGCATATGGAAAGGAAGGGATTGCAACCGAGGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGTCCACAAGTTCATTAGTAGTTTGCAACAGGGTTATGATACAATAGTGGGCGAGCGAGGGGTTCAACTGTCTGGTGGACAGAAGCAAAGGGTGGCTATTGCAAGAGCGATAATGAAGGCACCAAAGATATTACTACTAGATGAAGCCACTAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTAGATCGAGTTATGGTGGATAGAACCACAGTTGTGGTTGCACATCGTTTATCCACGATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTAATTGCAGAGAAAGGAAAGCATGAATCTTTGATCAATATCAAGGGTGGCACTTATGCTTCTTTGGCAGCATTACATGCAAGTGCCTCATCTTAG

Protein Analysis

1293

Amino Acids

138.79

Weight (kDa)

8.24

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 66 - 342 8.3e-58 ABC transporter transmembrane region
ABC_tran PF00005 410 - 558 1.3e-33 ABC transporter
ABC_membrane PF00664 727 - 999 4e-61 ABC transporter transmembrane region
ABC_tran PF00005 1068 - 1217 2.5e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1799, 1877, 2621
AccB1I GGYRCC 1 cut(s) 3616
AccB7I CCANNNNNTGG 1 cut(s) 2304
AccBSI CCGCTC 1 cut(s) 1284
AccII CGCG 2 cut(s) 899, 1806
AciI CCGC 7 cut(s) 75, 948, 1284, 1759, 1806, 2143, 3057
AclWI GGATC 4 cut(s) 1400, 2011, 2569, 3213
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 5 cut(s) 519, 1175, 1529, 1647, 2097
AcuI CTGAAG 3 cut(s) 369, 2799, 3275
AcyI GRCGYC 1 cut(s) 634
AdeI CACNNNGTG 1 cut(s) 2048
AfaI GTAC 5 cut(s) 141, 202, 827, 2191, 2801
AfeI AGCGCT 2 cut(s) 2692, 3052
AfiI CCNNNNNNNGG 6 cut(s) 1340, 2231, 2304, 2524, 2645, 3314
AflII CTTAAG 1 cut(s) 1634
AgeI ACCGGT 1 cut(s) 131
AhlI ACTAGT 3 cut(s) 1840, 2018, 3647
AjnI CCWGG 5 cut(s) 52, 1419, 2664, 3012, 3393
AleI CACNNNNGTG 2 cut(s) 2472, 3722
AloI GAACNNNNNNTCC 2 cut(s) 1209, 1241
Alw21I GWGCWC 6 cut(s) 540, 1678, 1769, 2469, 2926, 3655
Alw26I GTCTC 5 cut(s) 412, 641, 2137, 3012, 3364
AlwI GGATC 4 cut(s) 1400, 2011, 2569, 3213
AlwNI CAGNNNCTG 4 cut(s) 365, 1691, 2507, 2741
Ama87I CYCGRG 1 cut(s) 1642
Aor51HI AGCGCT 2 cut(s) 2692, 3052
AoxI GGCC 4 cut(s) 72, 549, 1597, 1937
ApoI RAATTY 5 cut(s) 519, 1175, 1529, 1647, 2097
AseI ATTAAT 3 cut(s) 1365, 2208, 2312
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 2 cut(s) 382, 520
AspLEI GCGC 4 cut(s) 899, 2053, 2693, 3053
AspS9I GGNCC 4 cut(s) 1597, 1826, 2668, 2819
AsuC2I CCSGG 2 cut(s) 502, 3203
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 1642
AvaII GGWCC 3 cut(s) 1826, 2668, 2819
AxyI CCTNAGG 2 cut(s) 461, 1548
BaeI ACNNNNGTAYC 4 cut(s) 1551, 1584, 3528, 3561
BanI GGYRCC 1 cut(s) 3616
BauI CACGAG 1 cut(s) 720
BbsI GAAGAC 3 cut(s) 458, 1161, 2721
Bbv12I GWGCWC 6 cut(s) 540, 1678, 1769, 2469, 2926, 3655
BccI CCATC 5 cut(s) 20, 624, 1352, 1469, 1850
BceAI ACGGC 1 cut(s) 75
BcgI CGANNNNNNTGC 4 cut(s) 1633, 1667, 2397, 2431
BciT130I CCWGG 5 cut(s) 54, 1421, 2666, 3014, 3395
BciVI GTATCC 2 cut(s) 97, 3183
BclI TGATCA 4 cut(s) 7, 249, 405, 3819
BcnI CCSGG 2 cut(s) 502, 3203
BcoDI GTCTC 5 cut(s) 412, 641, 2137, 3012, 3364
BcuI ACTAGT 3 cut(s) 1840, 2018, 3647
BfmI CTRYAG 7 cut(s) 357, 919, 1077, 2193, 2199, 2499, 3480
BfoI RGCGCY 2 cut(s) 2694, 3054
BfrI CTTAAG 1 cut(s) 1634
BfuI GTATCC 2 cut(s) 97, 3183
BlpI GCTNAGC 2 cut(s) 1509, 2463
Bme1390I CCNGG 7 cut(s) 54, 502, 1421, 2666, 3014, 3203, 3395
Bme18I GGWCC 3 cut(s) 1826, 2668, 2819
BmeT110I CYCGRG 1 cut(s) 1642
BmgT120I GGNCC 4 cut(s) 1597, 1826, 2668, 2819
BmiI GGNNCC 7 cut(s) 1021, 1425, 1598, 1851, 3019, 3399, 3618
BmrFI CCNGG 7 cut(s) 54, 502, 1421, 2666, 3014, 3203, 3395
BmrI ACTGGG 1 cut(s) 2168
BmuI ACTGGG 1 cut(s) 2168
BpiI GAAGAC 3 cut(s) 458, 1161, 2721
BpmI CTGGAG 1 cut(s) 879
Bpu10I CCTNAGC 1 cut(s) 624
Bpu1102I GCTNAGC 2 cut(s) 1509, 2463
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 1783, 2455
BpuMI CCSGG 2 cut(s) 502, 3203
Bsa29I ATCGAT 1 cut(s) 1356
BsaBI GATNNNNATC 2 cut(s) 30, 3824
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 9 cut(s) 318, 501, 552, 1162, 1228, 2518, 3013, 3226, 3462
BsaWI WCCGGW 3 cut(s) 131, 410, 680
BsaXI ACNNNNNCTCC 4 cut(s) 594, 624, 738, 768
Bsc4I CCNNNNNNNGG 6 cut(s) 1340, 2231, 2304, 2524, 2645, 3314
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 5 cut(s) 580, 1021, 2174, 2247, 2671
Bse21I CCTNAGG 2 cut(s) 461, 1548
Bse3DI GCAATG 1 cut(s) 3432
Bse8I GATNNNNATC 2 cut(s) 30, 3824
BseBI CCWGG 5 cut(s) 54, 1421, 2666, 3014, 3395
BseCI ATCGAT 1 cut(s) 1356
BseDI CCNNGG 9 cut(s) 318, 501, 552, 1162, 1228, 2518, 3013, 3226, 3462
BseGI GGATG 8 cut(s) 31, 130, 635, 717, 1158, 1189, 1480, 2122
BseJI GATNNNNATC 2 cut(s) 30, 3824
BseLI CCNNNNNNNGG 6 cut(s) 1340, 2231, 2304, 2524, 2645, 3314
BseMI GCAATG 1 cut(s) 3432
BseMII CTCAG 6 cut(s) 1500, 1562, 1598, 1683, 2454, 3359
BseNI ACTGG 5 cut(s) 580, 1021, 2174, 2247, 2671
BseRI GAGGAG 1 cut(s) 1179
BseYI CCCAGC 2 cut(s) 399, 2381
BsgI GTGCAG 1 cut(s) 3777
Bsh1236I CGCG 2 cut(s) 899, 1806
BshFI GGCC 4 cut(s) 74, 551, 1599, 1939
BshNI GGYRCC 1 cut(s) 3616
BshTI ACCGGT 1 cut(s) 131
BshVI ATCGAT 1 cut(s) 1356
BsiHKAI GWGCWC 6 cut(s) 540, 1678, 1769, 2469, 2926, 3655
BsiHKCI CYCGRG 1 cut(s) 1642
BsiSI CCGG 6 cut(s) 132, 411, 501, 681, 1735, 3202
BslFI GGGAC 2 cut(s) 1566, 2007
BslI CCNNNNNNNGG 6 cut(s) 1340, 2231, 2304, 2524, 2645, 3314
BsmAI GTCTC 5 cut(s) 412, 641, 2137, 3012, 3364
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 2 cut(s) 1566, 2007
BsmI GAATGC 1 cut(s) 1783
BsnI GGCC 4 cut(s) 74, 551, 1599, 1939
BsoBI CYCGRG 1 cut(s) 1642
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 6 cut(s) 540, 1678, 1769, 2469, 2926, 3655
Bsp1720I GCTNAGC 2 cut(s) 1509, 2463
Bsp19I CCATGG 2 cut(s) 552, 3226
BspACI CCGC 7 cut(s) 75, 948, 1284, 1759, 1806, 2143, 3057
BspANI GGCC 4 cut(s) 74, 551, 1599, 1939
BspCNI CTCAG 6 cut(s) 1501, 1561, 1597, 1684, 2455, 3360
BspDI ATCGAT 1 cut(s) 1356
BspFNI CGCG 2 cut(s) 899, 1806
BspHI TCATGA 2 cut(s) 34, 990
BspLI GGNNCC 7 cut(s) 1021, 1425, 1598, 1851, 3019, 3399, 3618
BspMAI CTGCAG 6 cut(s) 361, 923, 1081, 2203, 2503, 3484
BspPI GGATC 4 cut(s) 1400, 2011, 2569, 3213
BspQI GCTCTTC 2 cut(s) 161, 2894
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 3616
BspTI CTTAAG 1 cut(s) 1634
BsrBI CCGCTC 1 cut(s) 1284
BsrDI GCAATG 1 cut(s) 3432
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 5 cut(s) 580, 1021, 2174, 2247, 2671
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 9 cut(s) 318, 501, 552, 1162, 1228, 2518, 3013, 3226, 3462
BssNI GRCGYC 1 cut(s) 634
BssSI CACGAG 1 cut(s) 720
BssT1I CCWWGG 4 cut(s) 318, 552, 1228, 3226
Bst2BI CACGAG 1 cut(s) 720
Bst2UI CCWGG 5 cut(s) 54, 1421, 2666, 3014, 3395
Bst6I CTCTTC 3 cut(s) 161, 1951, 2894
BstACI GRCGYC 1 cut(s) 634
BstAFI CTTAAG 1 cut(s) 1634
BstAPI GCANNNNNTGC 5 cut(s) 365, 1265, 2486, 2507, 3863
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 7 cut(s) 813, 1342, 1515, 1871, 2722, 2941, 3551
BstDSI CCRYGG 2 cut(s) 552, 3226
BstENI CCTNNNNNAGG 2 cut(s) 2643, 3312
BstF5I GGATG 8 cut(s) 31, 130, 635, 717, 1158, 1189, 1480, 2122
BstFNI CGCG 2 cut(s) 899, 1806
BstH2I RGCGCY 2 cut(s) 2694, 3054
BstHHI GCGC 4 cut(s) 899, 2053, 2693, 3053
BstMAI GTCTC 5 cut(s) 412, 641, 2137, 3012, 3364
BstNI CCWGG 5 cut(s) 54, 1421, 2666, 3014, 3395
BstNSI RCATGY 2 cut(s) 2907, 3866
BstSCI CCNGG 7 cut(s) 52, 500, 1419, 2664, 3012, 3201, 3393
BstSFI CTRYAG 7 cut(s) 357, 919, 1077, 2193, 2199, 2499, 3480
BstUI CGCG 2 cut(s) 899, 1806
BstV2I GAAGAC 3 cut(s) 458, 1161, 2721
BstX2I RGATCY 1 cut(s) 3205
BstXI CCANNNNNNTGG 3 cut(s) 26, 301, 3724
BstYI RGATCY 1 cut(s) 3205
Bsu15I ATCGAT 1 cut(s) 1356
Bsu36I CCTNAGG 2 cut(s) 461, 1548
BsuI GTATCC 2 cut(s) 97, 3183
BsuRI GGCC 4 cut(s) 74, 551, 1599, 1939
BsuTUI ATCGAT 1 cut(s) 1356
BtgI CCRYGG 2 cut(s) 552, 3226
BtsCI GGATG 8 cut(s) 31, 130, 635, 717, 1158, 1189, 1480, 2122
BtsI GCAGTG 3 cut(s) 75, 1903, 3777
Cac8I GCNNGC 7 cut(s) 813, 1342, 1515, 1871, 2722, 2941, 3551
CaiI CAGNNNCTG 4 cut(s) 365, 1691, 2507, 2741
CciI TCATGA 2 cut(s) 34, 990
CfoI GCGC 4 cut(s) 899, 2053, 2693, 3053
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 4 cut(s) 1597, 1826, 2668, 2819
ClaI ATCGAT 1 cut(s) 1356
CseI GACGC 2 cut(s) 623, 2726
Csp6I GTAC 5 cut(s) 140, 201, 826, 2190, 2800
CspAI ACCGGT 1 cut(s) 131
CviQI GTAC 5 cut(s) 140, 201, 826, 2190, 2800
DraIII CACNNNGTG 1 cut(s) 2048
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 161, 1951, 2894
EarI CTCTTC 3 cut(s) 161, 1951, 2894
EciI GGCGGA 1 cut(s) 963
Eco130I CCWWGG 4 cut(s) 318, 552, 1228, 3226
Eco47I GGWCC 3 cut(s) 1826, 2668, 2819
Eco47III AGCGCT 2 cut(s) 2692, 3052
Eco57I CTGAAG 3 cut(s) 369, 2799, 3275
Eco81I CCTNAGG 2 cut(s) 461, 1548
Eco88I CYCGRG 1 cut(s) 1642
EcoNI CCTNNNNNAGG 2 cut(s) 2643, 3312
EcoO109I RGGNCCY 1 cut(s) 2819
EcoRI GAATTC 1 cut(s) 1647
EcoRII CCWGG 5 cut(s) 52, 1419, 2664, 3012, 3393
EcoT14I CCWWGG 4 cut(s) 318, 552, 1228, 3226
EcoT22I ATGCAT 2 cut(s) 1052, 2905
ErhI CCWWGG 4 cut(s) 318, 552, 1228, 3226
Esp3I CGTCTC 1 cut(s) 641
FalI AAGNNNNNCTT 4 cut(s) 2121, 2153, 2249, 2281
FaqI GGGAC 2 cut(s) 1566, 2007
FauNDI CATATG 2 cut(s) 21, 3439
FbaI TGATCA 4 cut(s) 7, 249, 405, 3819
FokI GGATG 8 cut(s) 38, 137, 642, 724, 1145, 1196, 1487, 2109
GlaI GCGC 4 cut(s) 898, 2052, 2692, 3052
GsaI CCCAGC 2 cut(s) 403, 2385
GsuI CTGGAG 1 cut(s) 879
HaeII RGCGCY 2 cut(s) 2694, 3054
HaeIII GGCC 4 cut(s) 74, 551, 1599, 1939
HapII CCGG 6 cut(s) 132, 411, 501, 681, 1735, 3202
HgaI GACGC 2 cut(s) 623, 2726
HhaI GCGC 4 cut(s) 899, 2053, 2693, 3053
Hin1I GRCGYC 1 cut(s) 634
Hin6I GCGC 4 cut(s) 897, 2051, 2691, 3051
HinP1I GCGC 4 cut(s) 897, 2051, 2691, 3051
HindIII AAGCTT 1 cut(s) 846
HpaII CCGG 6 cut(s) 132, 411, 501, 681, 1735, 3202
Hpy166II GTNNAC 5 cut(s) 340, 725, 1437, 3502, 3575
Hpy8I GTNNAC 5 cut(s) 340, 725, 1437, 3502, 3575
HpyAV CCTTC 7 cut(s) 863, 1033, 1465, 2272, 2810, 3443, 3607
HpyCH4IV ACGT 1 cut(s) 3189
HpySE526I ACGT 1 cut(s) 3189
Hsp92I GRCGYC 1 cut(s) 634
HspAI GCGC 4 cut(s) 897, 2051, 2691, 3051
Ksp22I TGATCA 4 cut(s) 7, 249, 405, 3819
LguI GCTCTTC 2 cut(s) 161, 2894
LmnI GCTCC 7 cut(s) 746, 1025, 1478, 1573, 1859, 2936, 3397
MaeII ACGT 1 cut(s) 3189
MaeIII GTNAC 2 cut(s) 493, 817
MbiI CCGCTC 1 cut(s) 1284
MfeI CAATTG 3 cut(s) 2481, 2571, 2760
MflI RGATCY 1 cut(s) 3205
MhlI GDGCHC 6 cut(s) 540, 1678, 1769, 2469, 2926, 3655
MlyI GAGTC 1 cut(s) 3104
MmeI TCCRAC 1 cut(s) 493
Mph1103I ATGCAT 2 cut(s) 1052, 2905
MroXI GAANNNNTTC 2 cut(s) 382, 520
MslI CAYNNNNRTG 6 cut(s) 24, 995, 1045, 2472, 3722, 3867
MspA1I CMGCKG 2 cut(s) 365, 1384
MspCI CTTAAG 1 cut(s) 1634
MspI CCGG 6 cut(s) 132, 411, 501, 681, 1735, 3202
MspR9I CCNGG 7 cut(s) 54, 502, 1421, 2666, 3014, 3203, 3395
MunI CAATTG 3 cut(s) 2481, 2571, 2760
Mva1269I GAATGC 1 cut(s) 1783
MvaI CCWGG 5 cut(s) 54, 1421, 2666, 3014, 3395
MvnI CGCG 2 cut(s) 899, 1806
NciI CCSGG 2 cut(s) 502, 3203
NcoI CCATGG 2 cut(s) 552, 3226
NdeI CATATG 2 cut(s) 21, 3439
NlaIV GGNNCC 7 cut(s) 1021, 1425, 1598, 1851, 3019, 3399, 3618
NsiI ATGCAT 2 cut(s) 1052, 2905
NspI RCATGY 2 cut(s) 2907, 3866
NspV TTCGAA 1 cut(s) 83
OliI CACNNNNGTG 2 cut(s) 2472, 3722
PagI TCATGA 2 cut(s) 34, 990
PciSI GCTCTTC 2 cut(s) 161, 2894
PctI GAATGC 1 cut(s) 1783
PdmI GAANNNNTTC 2 cut(s) 382, 520
PflMI CCANNNNNTGG 1 cut(s) 2304
PfoI TCCNGGA 1 cut(s) 3201
PinAI ACCGGT 1 cut(s) 131
PleI GAGTC 1 cut(s) 3104
PpsI GAGTC 1 cut(s) 3104
PpuMI RGGWCCY 1 cut(s) 2819
PshBI ATTAAT 3 cut(s) 1365, 2208, 2312
PsiI TTATAA 3 cut(s) 1799, 1877, 2621
Psp5II RGGWCCY 1 cut(s) 2819
Psp6I CCWGG 5 cut(s) 52, 1419, 2664, 3012, 3393
PspFI CCCAGC 2 cut(s) 399, 2381
PspGI CCWGG 5 cut(s) 52, 1419, 2664, 3012, 3393
PspN4I GGNNCC 7 cut(s) 1021, 1425, 1598, 1851, 3019, 3399, 3618
PspPI GGNCC 4 cut(s) 1597, 1826, 2668, 2819
PspPPI RGGWCCY 1 cut(s) 2819
PstI CTGCAG 6 cut(s) 361, 923, 1081, 2203, 2503, 3484
PstNI CAGNNNCTG 4 cut(s) 365, 1691, 2507, 2741
PsuI RGATCY 1 cut(s) 3205
PvuII CAGCTG 2 cut(s) 365, 1384
RsaI GTAC 5 cut(s) 141, 202, 827, 2191, 2801
RsaNI GTAC 5 cut(s) 140, 201, 826, 2190, 2800
RseI CAYNNNNRTG 6 cut(s) 24, 995, 1045, 2472, 3722, 3867
SapI GCTCTTC 2 cut(s) 161, 2894
Sau96I GGNCC 4 cut(s) 1597, 1826, 2668, 2819
SchI GAGTC 1 cut(s) 3104
ScrFI CCNGG 7 cut(s) 54, 502, 1421, 2666, 3014, 3203, 3395
SduI GDGCHC 6 cut(s) 540, 1678, 1769, 2469, 2926, 3655
SfcI CTRYAG 7 cut(s) 357, 919, 1077, 2193, 2199, 2499, 3480
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 3 cut(s) 1826, 2668, 2819
SmiMI CAYNNNNRTG 6 cut(s) 24, 995, 1045, 2472, 3722, 3867
SmlI CTYRAG 3 cut(s) 1634, 1762, 2470
SmoI CTYRAG 3 cut(s) 1634, 1762, 2470
SpeI ACTAGT 3 cut(s) 1840, 2018, 3647
SsiI CCGC 7 cut(s) 75, 948, 1284, 1759, 1806, 2143, 3057
SspI AATATT 4 cut(s) 1224, 1459, 2220, 2752
StyD4I CCNGG 7 cut(s) 52, 500, 1419, 2664, 3012, 3201, 3393
StyI CCWWGG 4 cut(s) 318, 552, 1228, 3226
TaiI ACGT 1 cut(s) 3192
TaqI TCGA 8 cut(s) 83, 483, 1356, 1999, 2407, 2454, 3272, 3697
TatI WGTACW 1 cut(s) 825
TauI GCSGC 3 cut(s) 77, 2145, 3059
TspGWI ACGGA 2 cut(s) 237, 3010
Van91I CCANNNNNTGG 1 cut(s) 2304
Vha464I CTTAAG 1 cut(s) 1634
VpaK11BI GGWCC 3 cut(s) 1826, 2668, 2819
VspI ATTAAT 3 cut(s) 1365, 2208, 2312
XagI CCTNNNNNAGG 2 cut(s) 2643, 3312
XapI RAATTY 5 cut(s) 519, 1175, 1529, 1647, 2097
XbaI TCTAGA 1 cut(s) 1952
XceI RCATGY 2 cut(s) 2907, 3866
XcmI CCANNNNNNNNNTGG 1 cut(s) 2740
XmnI GAANNNNTTC 2 cut(s) 382, 520
Zsp2I ATGCAT 2 cut(s) 1052, 2905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.