Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Reverse (-)

55199619 .. 55199972

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAGGGTTATGATACAATAGTGGGCGAGCGAGGGGTTCAACTGTCTGGTGGACAGAAGCAAAGGGTGGCTATTGCAAGAGCGATAATGAAGGCACCAAAGATATTACTACTAGATGAAGCCACTAGAGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTAGATCGAGTTATGGTGGATAGAACCACAGTTGTGGTTGCACATCATTTATCCACGATTAAGGGTGCAGATTATAAATGGAGTAATTGCAAAGAAAGGAAAGCATGGATCTTTGATCAATATCAAGGGTGGCACACTGGCACTTATGCTTCTTTGGCAGCATTACATGCAAGTGCCTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

117

Amino Acids

12.93

Weight (kDa)

8.79

Isoelectric Point (pI)

15.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	5 - 42	1.7e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	41, 161
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	326
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	283
BfaI	CTAG	3 cut(s)	113, 126, 170
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	2 cut(s)	127, 154
BsaBI	GATNNNNATC	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	3 cut(s)	172, 276, 283
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	172, 276, 283
Bst4CI	ACNGT	2 cut(s)	45, 199
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	351
BstKTI	GATC	3 cut(s)	175, 279, 286
BstMBI	GATC	3 cut(s)	172, 276, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 137, 323, 335
BstNSI	RCATGY	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	273, 335
CviJI	RGCY	3 cut(s)	71, 122, 131
CviKI_1	RGCY	3 cut(s)	71, 122, 131
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	174, 278, 285
DpnII	GATC	3 cut(s)	172, 276, 283
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	2 cut(s)	276, 338
FaiI	YATR	6 cut(s)	12, 182, 243, 274, 315, 336
FatI	CATG	2 cut(s)	272, 334
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	113, 126, 170
GluI	GCNGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	276, 338
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	134, 161
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	45, 199
HpyCH4V	TGCA	7 cut(s)	4, 77, 167, 209, 236, 258, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 137, 323, 335
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	276, 338
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	172, 276, 283
LpnPI	CCDG	2 cut(s)	33, 291
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	127, 154
MaeI	CTAG	3 cut(s)	113, 126, 170
MalI	GATC	3 cut(s)	174, 278, 285
MboI	GATC	3 cut(s)	172, 276, 283
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	200, 339
MwoI	GCNNNNNNNGC	4 cut(s)	128, 137, 323, 335
NdeII	GATC	3 cut(s)	172, 276, 283
NlaIII	CATG	2 cut(s)	276, 338
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	276
RseI	CAYNNNNRTG	2 cut(s)	200, 339
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	172, 276, 283
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	1 cut(s)	133
SfaNI	GCATC	2 cut(s)	127, 154
SmiMI	CAYNNNNRTG	2 cut(s)	200, 339
Sse9I	AATT	1 cut(s)	253
SspMI	CTAG	3 cut(s)	113, 126, 170
SstI	GAGCTC	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	45, 199
TaqI	TCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	104, 132
TspRI	CASTG	1 cut(s)	310
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	3 cut(s)	113, 126, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.