RchiOBHm_Chr6g0303241

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000116
Physical Location & Seq
Forward (+)
63038385 .. 63038759
375 bp
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UTR
Exon/CDS
Intron
PRQ27241

Sequence Viewer

Length: 375 bp
ATGCTTGAAGGGTTCAAAACTCAAGTGGGAGAGAAAGGAGCGCAATTATCTGGTGGGCAAAAACAGCGGGTGGCTATTGCTAGAGCTATACTGAAAGATCCATCAATTCTTCTTTTAGATGAAGCAAAAAGTGCATTGGACAGAGAGTATGAGAAGCTGGTTCAGGAGGCTCTAGATAAGCTAATGGATGGCCGAACCACTATTCTGGTAGCACACAGACTGTCAACTATTCGTGATGCGAACAAGATTTCCCTGCTACAAAATGGTAGGGTGGTGGAAATAGGTAACCATGAGCAGTTGATTGGAACTCCCGGTAGTCTGTATAAACAATTAGTTAGTCTACAGCAAGAGAAGAGTGAACAAGTGCTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

6.75

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 6 - 42 7.6e-11 ABC transporter
SMC_N PF02463 15 - 84 5.5e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 340
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 190
AgsI TTSAA 2 cut(s) 8, 16
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 86, 157, 181
AluI AGCT 3 cut(s) 86, 157, 181
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 1 cut(s) 92
AoxI GGCC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 2 cut(s) 109, 182
BcnI CCSGG 1 cut(s) 312
BfaI CTAG 2 cut(s) 81, 173
BfmI CTRYAG 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 193
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 312
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 92
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 131
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 64, 131
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 193
CfoI GCGC 1 cut(s) 43
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 74, 86, 157, 170, 181, 192
CviKI_1 RGCY 6 cut(s) 74, 86, 157, 170, 181, 192
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 284
FaeI CATG 1 cut(s) 293
FaiI YATR 4 cut(s) 89, 150, 291, 324
FatI CATG 1 cut(s) 289
FauI CCCGC 1 cut(s) 60
FblI GTMKAC 1 cut(s) 340
FokI GGATG 1 cut(s) 200
FspBI CTAG 2 cut(s) 81, 173
GlaI GCGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 3 cut(s) 225, 341, 359
Hpy188III TCNNGA 3 cut(s) 164, 173, 233
Hpy8I GTNNAC 3 cut(s) 225, 341, 359
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 131
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 6 cut(s) 36, 143, 149, 191, 266, 325
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 81, 173
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 101, 364
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 3 cut(s) 44, 105, 329
MnlI CCTC 1 cut(s) 160
MseI TTAA 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 64, 131
NciI CCSGG 1 cut(s) 312
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 97
SaqAI TTAA 1 cut(s) 373
Sau3AI GATC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 369
SetI ASST 4 cut(s) 88, 159, 183, 286
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 3 cut(s) 44, 105, 329
SsiI CCGC 1 cut(s) 67
SspMI CTAG 2 cut(s) 81, 173
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 369
TasI AATT 3 cut(s) 44, 105, 329
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 2 cut(s) 81, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.