RchiOBHm_Chr4g0427851

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000116
Physical Location & Seq
Forward (+)
52992678 .. 52998000
5323 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39676

Sequence Viewer

Length: 3936 bp
ATGGCTGAGGAGAATCCCTTGGATGGAGATGCAATAACCAAACAAGAAAATGCAACAAATAGCCATCCAGCAGTGACGGAGGGTTCCAACGAAAACAGACAAGATACAAACCAGAGCAAGGAGGATGGAACTAAAACAGTTCCGCTTTACAAACTTTTCTCTTTTGCCGATTCCATGGATTACCTGTTAATGTCTGTTGGTACAATCAGCGCTATTGGTAATGGACTCTGTATGCCTCTACTGACCATAATCTTTGGAGATCTAATTACTTCTTTTAGAGAAACTGGGAATAACAAGAGAGTGGCTGATGCAGTTTCCAAGGTGGCTCTAAAGTATGTTTACTTGGCTCTTGGGGGTGCTGCTGCAGCATTTCTACGTAAGTCCATTGGGTCAGTTTTTTTAATAAATTGTTTGGCCTGGTGCAAAAGTGAAATACTTGATTTCTGTGTGCTAGAGATGTCATGCTGGATGGTCACTGGAGAGAGACAGGCTGCACGATTACGAAGTTTATACTTGAAGACCATACTGAGGCAAGATGTCAGCTATTTTGATCAAGAAATCAACTCTGGAGAAATTGTTGGGAGGATGTCAGGTGATACTCTGCTCATTAAAGAGGCGATGGGTGAGAAGGCAGGAACTTTTTTCCAAGTAGTTGCAACATTCATAGGCAGCTACTTTATAGCATTTTTTAAGGGATGGCTTCTCACCCTTGTCATGCTATCCTCTATTCCCCCTCTTGTCTTATCTGGTGCTGTCATGAACCATTTCATAGTGAAATTGGCGTCCCATGGACAAGCTGCATATTCAGGAGGAGCAATTGTGGTAGAGGAGACAATTGGTTCTATCAGAACTGTTGCATCGTTCACAGGGGAGAAGCAAGCTATATCTAACTACAATAACTCCTTGAATAAAGCTTACAAGTCCGGTGTGCAAGAGGGTTGGGCATCTGGTTTGGGTTCTGGTGTACTTATGCTTTTGGTATTCTGTACTTATGCTTTGGCCGTATGGTTTGGTGGAATAATGATACTTGAAAAAGGATACAAGGGAGAAGATGCCATGATAGTACTTTTTGCTGTGGTAATTGGCTCACTATCTCTTGGGAAAGTGTCTCCTTGCATCACTGCATTTGCTCCTGGACAAGCTGCAGCTTATAAGATGTTTGAGACAATTAACAGAAAGCCAAAGATAGATGCGTATGATACTAATGGGAGGGTATTACAAGGTATTCTTGGAGACATAGAACTGAGGGATGTTTGTTTTAGTTATCCCACAAGACTGGATGAGCAAATATTCAATGGATTTTGTCTCTCAATACCTAGTGGTGCAACTGCTGCTTTGGTTGGAGAAAGCGGAAGTGGTAAATCAACTGTACTCAGTTTGATTGAGAGATTTTATGACCCCCAGGATGGTGAAGTTCTTATTGATTGTGTTAATATCAAAGAGTTCCAACTGAAATGGATCAGACAGAAAATTGGCCTTGTATGCCAGGAACCAGTTTTGTTTACTGGTAGCATTAAAGATAATATTGCGTTTGGAAAGGATGGTGCTACTACTGAAGAGGTAGCGACTGCTGCTGAGCTTGCCAATGCTGCAAAATTCATAGCTTTACTGCCTCAGGGAATAGATACACTGGTTGGTGAGCATGGAACTCAACTATCTGGGGGACAAAAGCAAAGAGTTGCTATAGCTAGAGTAATTCTGAAGAACCCAAGAATTTTACTTTTAGATGAAGCCACAAGCGCTCTTGACACAGAATCTGAAAGAGTTGTTCAGGAGGCACTGGACAGAATTATGGTTGACCGGACTACTATCATTGTAGCCCATCGCTTGAGCACTGTAAGGAATGCTGATACCATTGCTGTCATACATCACGGAACAATTGCTGAGAAAGGACCACATTCTGAGCTAAGCAAGGATCCCGATGGAGCATATAGCAGGCTTATAAGGTTGCAAGAAACTAGTTCTGTGTCAGAACACTCGGAACATACTTGTCTAAGTTCTGAGAAATCATCTCCAAGAAGTGGTAGTCGTCACTCATTCTCAATCTCAAATGGTAATCCTACTGCAAGCGGTATCCTTGAAACAACAACTGTAGAACCTGATGTTCCTGCTTCAGTACCATCAGAAGGGCCTCCAGGAGTCTCTCTTCGCCGCCTTGCTTACCTGAACAAGCCAGAGATACCAGTGCTACTTCTAGGTACTATAGTTGCAGCAGTCAATGGGGTAATCTTCCCTGTTTATGGTAGTTTGTTGTCAAGTGTAATCAAGACCTTCTTTGAGCCACCTCATGAACTCCGTAAGCATTCCAAGTTTTGGGCAACAATCTTTGTTGTTCTTGGAGTGGTATCTTTCTTAGCACAATCATCAAGAGCGTACCTCTTTGCCGTGGCGGGTTGCAGGTTAATAAGAAGAGTCCGAGCAATGTGCTTTGAGAAGGTGGTTTACATGGAAGTAAGTTGGTTCGATGAAGCTGAGCACTCAAGTGGTGCCATTGGAGCAAGGCTTTCTACAGATGCAGCGTCTTTGAGAGGGCTTGTTGGAGATGCTCTTGGTTTGTTGATTCAGAATACAGCAACAGCAATTACAGGGATGATTATTGCTTTTAGTGCAAATTGGCAACTTTCTCTTGTAATCCTTGTTCTGTTACCCTTATTAGGAGTAAATGGATATTTTCAAGTGCAGTACATGAAAGGATTCAGTGCAAATGCAAAGAAAATGTACGAGGATGCAAGCCAAGTAGCTAGTGATGCTGTGGGGAGTATTCGGACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATTGAGTTGTACAAGAAAAAATGTGACGGCCCTATTAAGACAGGGATAAGACAAGGGATAGTTACTGGGATAGGTTTCGGGGTATCACTCTTTTTACAGTTTTCAGTGTTTGCCTTGATTTTTTATACTGGAGGTCTACTTGTTGCAGCAGGCAAGACAACATTCTTTGCTGTTTTCCAGGCTTTCTTTGCTCTCACTATTGCTTCTCTCGGACTTGCGCAGTCGAGCTCCCTAGCACCTGATGTTAGTAAAGGAAAGAGCTCTGCTGCTTCCATATTTGCAATTCTTGACCGGAAATCAAAAATAGACTCTAGTGATAACTCGGGCATGACAATAGAGAATGTGATGGGAGAAATTGAATTTCAGCATGTCAATTTCAAGTATCCTAGTAGACCTAAAGTGCCAATTTTCAACGATCTTTGCTTGACCATTAGTTGTGGCAAGCAATACAAAAGATTGTGGAACTTATGCTTAAATTATATTATTCAGACAATTGCTCTGGTTGGTGAAAGTGGGAGTGGAAAATCGACAGTGATCTCTTTGATCCAGAGATTTTACGACCCCAATGCTGGTCACATTACATTGGATGGAATCGAAATCCAGAAACTACAGTTGAGGTGGTTAAGAAAGCAAATGGGGCTGGTGAGCCAGGAGCCTCCGCTGTTTAATGACACCATCCGAGCCAACATTGCATATGGAAAGGGAGGAGAGGCAACCGAGGCTGAAGTTATAGCTGCAGCAGAACTGGCAAATGCACAAGAGTTCATTAGTAGTTTACAACATGGTTATGATACAATAGTAGGAGAGCGAGGGGTCCAATTGTCCGGTGGACAGAAGCAAAGAGTTGCTATTGCACGAGCTATTTTGAAGGCACCAAAGATATTACTACTTGATGAAGCCACTAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTGGACCGAGTTATGGTGGATCCAACCACAGTGGTTGTTGCCCATCGGTTTTCCACAATAAAAGGTGCTGATGTCATTGCTGTGGTAAAAAATGGAGTCATTGCAGAGAAAGGGAAGCATGAAAGTTTGATCAGAATCAGCAATGGCATTTATGCTTCTTTGGTAGCATTGCATGCAAGTGCCTCATCTTAG

Protein Analysis

1311

Amino Acids

141.38

Weight (kDa)

6.61

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 149 - 364 1.8e-48 ABC transporter transmembrane region
ABC_tran PF00005 433 - 580 4.4e-31 ABC transporter
ABC_membrane PF00664 730 - 1002 1.9e-54 ABC transporter transmembrane region
ABC_tran PF00005 1096 - 1235 2.9e-31 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1152, 1943
Acc16I TGCGCA 1 cut(s) 3018
Acc36I ACCTGC 1 cut(s) 2388
AccB1I GGYRCC 2 cut(s) 2486, 3670
AccB7I CCANNNNNTGG 2 cut(s) 2021, 2313
AccI GTMKAC 2 cut(s) 2935, 3190
AciI CCGC 6 cut(s) 143, 1350, 2070, 2152, 2390, 3458
AclWI GGATC 6 cut(s) 1466, 1910, 1923, 3337, 3758, 3771
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 3 cut(s) 1595, 1713, 3158
AcuI CTGAAG 5 cut(s) 1575, 1721, 2097, 2808, 3543
AcyI GRCGYC 1 cut(s) 782
AfeI AGCGCT 2 cut(s) 211, 1741
AhlI ACTAGT 2 cut(s) 1958, 3701
AjnI CCWGG 7 cut(s) 416, 1132, 1401, 1485, 2134, 2976, 3447
AleI CACNNNNGTG 1 cut(s) 2481
Alw21I GWGCWC 5 cut(s) 1835, 2478, 3029, 3062, 3709
Alw26I GTCTC 7 cut(s) 478, 824, 1113, 1157, 1227, 1310, 2146
AlwI GGATC 6 cut(s) 1466, 1910, 1923, 3337, 3758, 3771
AlwNI CAGNNNCTG 1 cut(s) 1757
Ama87I CYCGRG 1 cut(s) 3121
Aor51HI AGCGCT 2 cut(s) 211, 1741
AoxI GGCC 5 cut(s) 414, 999, 1474, 2129, 2827
ApoI RAATTY 3 cut(s) 1595, 1713, 3158
Asp700I GAANNNNTTC 2 cut(s) 764, 2693
AspLEI GCGC 3 cut(s) 212, 1742, 3019
AspS9I GGNCC 5 cut(s) 1892, 2129, 2828, 3613, 3748
AsuHPI GGTGA 8 cut(s) 605, 635, 697, 1421, 1649, 2809, 3317, 3454
AvaI CYCGRG 1 cut(s) 3121
AvaII GGWCC 3 cut(s) 1892, 3613, 3748
AxyI CCTNAGG 1 cut(s) 1614
BaeI ACNNNNGTAYC 6 cut(s) 1617, 1650, 2190, 2223, 3582, 3615
BamHI GGATCC 2 cut(s) 1915, 3763
BanI GGYRCC 2 cut(s) 2486, 3670
BanII GRGCYC 2 cut(s) 3029, 3062
BarI GAAGNNNNNNTAC 2 cut(s) 2426, 2458
BauI CACGAG 1 cut(s) 3654
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 5 cut(s) 1835, 2478, 3029, 3062, 3709
BbvCI CCTCAGC 1 cut(s) 6
BceAI ACGGC 3 cut(s) 986, 2369, 2842
BcgI CGANNNNNNTGC 4 cut(s) 2406, 2440, 3347, 3381
BciT130I CCWGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
BciVI GTATCC 3 cut(s) 1031, 2084, 3192
BclI TGATCA 2 cut(s) 550, 3873
BcoDI GTCTC 7 cut(s) 478, 824, 1113, 1157, 1227, 1310, 2146
BcuI ACTAGT 2 cut(s) 1958, 3701
BfmI CTRYAG 8 cut(s) 363, 1143, 1683, 2091, 2202, 2508, 3407, 3534
BfoI RGCGCY 2 cut(s) 213, 1743
BfuAI ACCTGC 1 cut(s) 2388
BfuI GTATCC 3 cut(s) 1031, 2084, 3192
BglII AGATCT 1 cut(s) 259
BlpI GCTNAGC 3 cut(s) 1575, 1907, 2472
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
Bme18I GGWCC 3 cut(s) 1892, 3613, 3748
BmeT110I CYCGRG 1 cut(s) 3121
BmgT120I GGNCC 5 cut(s) 1892, 2129, 2828, 3613, 3748
BmiI GGNNCC 8 cut(s) 85, 1491, 1917, 2488, 3453, 3614, 3672, 3765
BmrFI CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
BmrI ACTGGG 2 cut(s) 294, 2874
BmuI ACTGGG 2 cut(s) 294, 2874
BpiI GAAGAC 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 2361, 2393
BpmI CTGGAG 4 cut(s) 498, 588, 2118, 2949
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 3 cut(s) 1575, 1907, 2472
BpuEI CTTGAG 2 cut(s) 1849, 2464
BsaAI YACGTR 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 3878
BsaHI GRCGYC 1 cut(s) 782
BsaJI CCNNGG 7 cut(s) 18, 174, 318, 787, 1401, 2385, 3516
BsaWI WCCGGW 4 cut(s) 923, 1800, 3090, 3623
BsaXI ACNNNNNCTCC 6 cut(s) 561, 591, 804, 834, 884, 914
Bse21I CCTNAGG 1 cut(s) 1614
Bse3DI GCAATG 7 cut(s) 1854, 2427, 3486, 3819, 3843, 3892, 3911
Bse8I GATNNNNATC 1 cut(s) 3878
BseBI CCWGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
BseDI CCNNGG 7 cut(s) 18, 174, 318, 787, 1401, 2385, 3516
BseJI GATNNNNATC 1 cut(s) 3878
BseMI GCAATG 7 cut(s) 1854, 2427, 3486, 3819, 3843, 3892, 3911
BseMII CTCAG 9 cut(s) 518, 1235, 1387, 1566, 1628, 1875, 1893, 1992, 2463
BseRI GAGGAG 4 cut(s) 23, 825, 842, 3519
BsgI GTGCAG 2 cut(s) 477, 2699
BshFI GGCC 5 cut(s) 416, 1001, 1476, 2131, 2829
BshNI GGYRCC 2 cut(s) 2486, 3670
BsiHKAI GWGCWC 5 cut(s) 1835, 2478, 3029, 3062, 3709
BsiHKCI CYCGRG 1 cut(s) 3121
BsiSI CCGG 4 cut(s) 924, 1801, 3091, 3624
BslFI GGGAC 2 cut(s) 769, 1677
BsmAI GTCTC 7 cut(s) 478, 824, 1113, 1157, 1227, 1310, 2146
BsmFI GGGAC 2 cut(s) 769, 1677
BsmI GAATGC 2 cut(s) 1849, 2302
BsnI GGCC 5 cut(s) 416, 1001, 1476, 2131, 2829
BsoBI CYCGRG 1 cut(s) 3121
Bsp1286I GDGCHC 5 cut(s) 1835, 2478, 3029, 3062, 3709
Bsp1407I TGTACA 1 cut(s) 2808
Bsp143I GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
Bsp1720I GCTNAGC 3 cut(s) 1575, 1907, 2472
Bsp19I CCATGG 2 cut(s) 174, 787
BspACI CCGC 6 cut(s) 143, 1350, 2070, 2152, 2390, 3458
BspANI GGCC 5 cut(s) 416, 1001, 1476, 2131, 2829
BspCNI CTCAG 9 cut(s) 519, 1236, 1386, 1567, 1627, 1876, 1894, 1993, 2464
BspHI TCATGA 2 cut(s) 756, 2287
BspLI GGNNCC 8 cut(s) 85, 1491, 1917, 2488, 3453, 3614, 3672, 3765
BspMAI CTGCAG 3 cut(s) 367, 1147, 3538
BspMI ACCTGC 1 cut(s) 2388
BspPI GGATC 6 cut(s) 1466, 1910, 1923, 3337, 3758, 3771
BspT107I GGYRCC 2 cut(s) 2486, 3670
BsrDI GCAATG 7 cut(s) 1854, 2427, 3486, 3819, 3843, 3892, 3911
BsrGI TGTACA 1 cut(s) 2808
BssECI CCNNGG 7 cut(s) 18, 174, 318, 787, 1401, 2385, 3516
BssMI GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
BssNI GRCGYC 1 cut(s) 782
BssSI CACGAG 1 cut(s) 3654
BssT1I CCWWGG 4 cut(s) 18, 174, 318, 787
Bst2BI CACGAG 1 cut(s) 3654
Bst2UI CCWGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
Bst4CI ACNGT 9 cut(s) 139, 853, 1369, 1837, 2092, 2898, 3331, 3411, 3775
Bst6I CTCTTC 4 cut(s) 1551, 2151, 2404, 2784
BstACI GRCGYC 1 cut(s) 782
BstAPI GCANNNNNTGC 2 cut(s) 1331, 3917
BstAUI TGTACA 1 cut(s) 2808
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 8 cut(s) 879, 1581, 1937, 2068, 2731, 2950, 3242, 3918
BstDSI CCRYGG 3 cut(s) 174, 787, 2385
BstH2I RGCGCY 2 cut(s) 213, 1743
BstHHI GCGC 3 cut(s) 212, 1742, 3019
BstKTI GATC 9 cut(s) 262, 553, 1461, 1918, 3217, 3336, 3345, 3766, 3876
BstMAI GTCTC 7 cut(s) 478, 824, 1113, 1157, 1227, 1310, 2146
BstMBI GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
BstNI CCWGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
BstNSI RCATGY 2 cut(s) 3170, 3920
BstSCI CCNGG 7 cut(s) 416, 1132, 1401, 1485, 2134, 2976, 3447
BstSFI CTRYAG 8 cut(s) 363, 1143, 1683, 2091, 2202, 2508, 3407, 3534
BstSNI TACGTA 1 cut(s) 377
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 3 cut(s) 259, 1915, 3763
BstXI CCANNNNNNTGG 1 cut(s) 1276
BstYI RGATCY 3 cut(s) 259, 1915, 3763
Bsu36I CCTNAGG 1 cut(s) 1614
BsuI GTATCC 3 cut(s) 1031, 2084, 3192
BsuRI GGCC 5 cut(s) 416, 1001, 1476, 2131, 2829
BtgI CCRYGG 3 cut(s) 174, 787, 2385
BtgZI GCGATG 2 cut(s) 632, 1808
BtsI GCAGTG 2 cut(s) 78, 1119
BveI ACCTGC 1 cut(s) 2388
Cac8I GCNNGC 8 cut(s) 879, 1581, 1937, 2068, 2731, 2950, 3242, 3918
CaiI CAGNNNCTG 1 cut(s) 1757
CciI TCATGA 2 cut(s) 756, 2287
CfoI GCGC 3 cut(s) 212, 1742, 3019
Cfr13I GGNCC 5 cut(s) 1892, 2129, 2828, 3613, 3748
CseI GACGC 2 cut(s) 771, 2508
CspCI CAANNNNNGTGG 4 cut(s) 3756, 3760, 3791, 3795
DpnI GATC 9 cut(s) 261, 552, 1460, 1917, 3216, 3335, 3344, 3765, 3875
DpnII GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 4 cut(s) 1551, 2151, 2404, 2784
EarI CTCTTC 4 cut(s) 1551, 2151, 2404, 2784
Ecl136II GAGCTC 2 cut(s) 3027, 3060
Eco105I TACGTA 1 cut(s) 377
Eco130I CCWWGG 4 cut(s) 18, 174, 318, 787
Eco24I GRGCYC 2 cut(s) 3029, 3062
Eco47I GGWCC 3 cut(s) 1892, 3613, 3748
Eco47III AGCGCT 2 cut(s) 211, 1741
Eco53kI GAGCTC 2 cut(s) 3027, 3060
Eco57I CTGAAG 5 cut(s) 1575, 1721, 2097, 2808, 3543
Eco81I CCTNAGG 1 cut(s) 1614
Eco88I CYCGRG 1 cut(s) 3121
EcoICRI GAGCTC 2 cut(s) 3027, 3060
EcoO109I RGGNCCY 1 cut(s) 2129
EcoRII CCWGG 7 cut(s) 416, 1132, 1401, 1485, 2134, 2976, 3447
EcoT14I CCWWGG 4 cut(s) 18, 174, 318, 787
EcoT38I GRGCYC 2 cut(s) 3029, 3062
ErhI CCWWGG 4 cut(s) 18, 174, 318, 787
FalI AAGNNNNNCTT 4 cut(s) 1212, 1244, 2258, 2290
FaqI GGGAC 2 cut(s) 769, 1677
FauI CCCGC 1 cut(s) 2383
FauNDI CATATG 1 cut(s) 3493
FbaI TGATCA 2 cut(s) 550, 3873
FblI GTMKAC 2 cut(s) 2935, 3190
FriOI GRGCYC 2 cut(s) 3029, 3062
FspI TGCGCA 1 cut(s) 3018
GlaI GCGC 3 cut(s) 211, 1741, 3018
GsuI CTGGAG 4 cut(s) 498, 588, 2118, 2949
HaeII RGCGCY 2 cut(s) 213, 1743
HaeIII GGCC 5 cut(s) 416, 1001, 1476, 2131, 2829
HapII CCGG 4 cut(s) 924, 1801, 3091, 3624
HgaI GACGC 2 cut(s) 771, 2508
HhaI GCGC 3 cut(s) 212, 1742, 3019
Hin1I GRCGYC 1 cut(s) 782
Hin6I GCGC 3 cut(s) 210, 1740, 3017
HinP1I GCGC 3 cut(s) 210, 1740, 3017
HincII GTYRAC 1 cut(s) 1798
HindII GTYRAC 1 cut(s) 1798
HindIII AAGCTT 1 cut(s) 912
HpaII CCGG 4 cut(s) 924, 1801, 3091, 3624
HphI GGTGA 8 cut(s) 605, 635, 697, 1421, 1649, 2809, 3317, 3454
HpyAV CCTTC 6 cut(s) 622, 2120, 2281, 2428, 2788, 3661
HpyCH4III ACNGT 9 cut(s) 139, 853, 1369, 1837, 2092, 2898, 3331, 3411, 3775
HpyCH4IV ACGT 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 782
HspAI GCGC 3 cut(s) 210, 1740, 3017
Ksp22I TGATCA 2 cut(s) 550, 3873
Kzo9I GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
LmnI GCTCC 6 cut(s) 812, 1135, 1925, 2495, 3032, 3451
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 7 cut(s) 73, 472, 2030, 2643, 2822, 2860, 3371
MalI GATC 9 cut(s) 261, 552, 1460, 1917, 3216, 3335, 3344, 3765, 3875
MboI GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
MboII GAAGA 8 cut(s) 529, 1061, 1568, 1714, 2138, 2221, 2421, 2801
MfeI CAATTG 6 cut(s) 816, 834, 1878, 2769, 3291, 3617
MflI RGATCY 3 cut(s) 259, 1915, 3763
MhlI GDGCHC 5 cut(s) 1835, 2478, 3029, 3062, 3709
MlyI GAGTC 5 cut(s) 219, 2148, 2421, 3101, 3849
MmeI TCCRAC 5 cut(s) 111, 1321, 1471, 2518, 3791
MroXI GAANNNNTTC 2 cut(s) 764, 2693
MslI CAYNNNNRTG 4 cut(s) 2481, 3585, 3824, 3921
MspA1I CMGCKG 1 cut(s) 3460
MspI CCGG 4 cut(s) 924, 1801, 3091, 3624
MspR9I CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
MunI CAATTG 6 cut(s) 816, 834, 1878, 2769, 3291, 3617
Mva1269I GAATGC 2 cut(s) 1849, 2302
MvaI CCWGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
NcoI CCATGG 2 cut(s) 174, 787
NdeI CATATG 1 cut(s) 3493
NdeII GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
NlaIV GGNNCC 8 cut(s) 85, 1491, 1917, 2488, 3453, 3614, 3672, 3765
NmuCI GTSAC 5 cut(s) 73, 472, 2030, 2822, 3371
NsbI TGCGCA 1 cut(s) 3018
NspI RCATGY 2 cut(s) 3170, 3920
OliI CACNNNNGTG 1 cut(s) 2481
PaeI GCATGC 1 cut(s) 3920
PagI TCATGA 2 cut(s) 756, 2287
PctI GAATGC 2 cut(s) 1849, 2302
PdmI GAANNNNTTC 2 cut(s) 764, 2693
PfeI GAWTC 8 cut(s) 13, 170, 1754, 2560, 2694, 3390, 3719, 3879
PflMI CCANNNNNTGG 2 cut(s) 2021, 2313
PfoI TCCNGGA 2 cut(s) 1132, 2134
PleI GAGTC 5 cut(s) 219, 2147, 2420, 3101, 3848
PpsI GAGTC 5 cut(s) 219, 2147, 2420, 3101, 3848
Ppu21I YACGTR 1 cut(s) 377
PsiI TTATAA 2 cut(s) 1152, 1943
Psp124BI GAGCTC 2 cut(s) 3029, 3062
Psp6I CCWGG 7 cut(s) 416, 1132, 1401, 1485, 2134, 2976, 3447
PspGI CCWGG 7 cut(s) 416, 1132, 1401, 1485, 2134, 2976, 3447
PspN4I GGNNCC 8 cut(s) 85, 1491, 1917, 2488, 3453, 3614, 3672, 3765
PspPI GGNCC 5 cut(s) 1892, 2129, 2828, 3613, 3748
PsrI GAACNNNNNNTAC 2 cut(s) 2622, 2654
PstI CTGCAG 3 cut(s) 367, 1147, 3538
PstNI CAGNNNCTG 1 cut(s) 1757
PsuI RGATCY 3 cut(s) 259, 1915, 3763
RseI CAYNNNNRTG 4 cut(s) 2481, 3585, 3824, 3921
SacI GAGCTC 2 cut(s) 3029, 3062
Sau3AI GATC 9 cut(s) 259, 550, 1458, 1915, 3214, 3333, 3342, 3763, 3873
Sau96I GGNCC 5 cut(s) 1892, 2129, 2828, 3613, 3748
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 5 cut(s) 219, 2148, 2421, 3101, 3849
ScrFI CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2136, 2978, 3449
SduI GDGCHC 5 cut(s) 1835, 2478, 3029, 3062, 3709
SfcI CTRYAG 8 cut(s) 363, 1143, 1683, 2091, 2202, 2508, 3407, 3534
SinI GGWCC 3 cut(s) 1892, 3613, 3748
SmiMI CAYNNNNRTG 4 cut(s) 2481, 3585, 3824, 3921
SmlI CTYRAG 2 cut(s) 1828, 2479
SmoI CTYRAG 2 cut(s) 1828, 2479
SnaBI TACGTA 1 cut(s) 377
SpeI ACTAGT 2 cut(s) 1958, 3701
SphI GCATGC 1 cut(s) 3920
SsiI CCGC 6 cut(s) 143, 1350, 2070, 2152, 2390, 3458
SspI AATATT 2 cut(s) 1290, 1525
SstI GAGCTC 2 cut(s) 3029, 3062
StyD4I CCNGG 7 cut(s) 416, 1132, 1401, 1485, 2134, 2976, 3447
StyI CCWWGG 4 cut(s) 18, 174, 318, 787
TaaI ACNGT 9 cut(s) 139, 853, 1369, 1837, 2092, 2898, 3331, 3411, 3775
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 2463, 3023, 3326, 3393
TaqII GACCGA 1 cut(s) 3765
TatI WGTACW 6 cut(s) 964, 986, 1063, 1369, 2682, 2808
TauI GCSGC 1 cut(s) 2154
TfiI GAWTC 8 cut(s) 13, 170, 1754, 2560, 2694, 3390, 3719, 3879
TseFI GTSAC 5 cut(s) 73, 472, 2030, 2822, 3371
Tsp45I GTSAC 5 cut(s) 73, 472, 2030, 2822, 3371
TspGWI ACGGA 3 cut(s) 92, 1887, 2285
Van91I CCANNNNNTGG 2 cut(s) 2021, 2313
VpaK11BI GGWCC 3 cut(s) 1892, 3613, 3748
XapI RAATTY 3 cut(s) 1595, 1713, 3158
XceI RCATGY 2 cut(s) 3170, 3920
XcmI CCANNNNNNNNNTGG 1 cut(s) 3623
XmiI GTMKAC 2 cut(s) 2935, 3190
XmnI GAANNNNTTC 2 cut(s) 764, 2693
ZrmI AGTACT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.