Rw5G048020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000116
Physical Location & Seq
Forward (+)
83315397 .. 83317340
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048020.1

Sequence Viewer

Length: 519 bp
ATGAAATTTTCTCTTCTTATTGATTGGGACATTAGGTATATGAAATCTATGTTTGGGTTTATTGATCGGATGTTTGGGTATATGAAATCTATGTTTGGGTTTTCTGAAATTTTCTCTTCTCTCTCTCTCTCCATTTTCGATATGACCCATCTCCGGTCCATTTCACATAACGCAACAACCTGCAAGGCTGTAACCAGCAACCCATCTCCGGTCTCCGAGCTCTGCCTCCAGCCTTTCAAGCCCCACCGGCCACCGCCGAACTCGGGGTTGGAGACTTGGAGCACTCTCGAGTCTCGAACACGGAACACAACGAGCAAGGCTGTAACCAGCAACCATCATATTGTTCGATTCAATGTGAGGCAGATGTGTATCTTTTCGATGGTTGCAAATGGGAAAGACCTCCTTTTTGTGAGACCTGATGTTGTGTTTGATGGGAATAAACTGATCAGGTTTGGAGATTTTGTTCAATTAATAGCATGGATTTGCAAGAAATCTAGATTGGTCGATCGTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.85

Weight (kDa)

9.67

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 248
AcsI RAATTY 2 cut(s) 5, 108
AfiI CCNNNNNNNGG 3 cut(s) 153, 208, 263
AgsI TTSAA 3 cut(s) 238, 352, 467
AjuI GAANNNNNNNTTGG 4 cut(s) 251, 283, 482, 514
AloI GAACNNNNNNTCC 2 cut(s) 447, 479
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 2 cut(s) 222, 284
Alw26I GTCTC 4 cut(s) 217, 266, 297, 406
Ama87I CYCGRG 2 cut(s) 262, 287
AoxI GGCC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 5, 108
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AseI ATTAAT 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 156
AvaI CYCGRG 2 cut(s) 262, 287
AvaII GGWCC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 222, 284
BccI CCATC 5 cut(s) 156, 211, 342, 373, 425
BclI TGATCA 1 cut(s) 444
BcoDI GTCTC 4 cut(s) 217, 266, 297, 406
BfaI CTAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 188
BglI GCCNNNNNGGC 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 2 cut(s) 262, 287
BmgT120I GGNCC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 368
BsaI GGTCTC 2 cut(s) 217, 406
BsaWI WCCGGW 2 cut(s) 153, 208
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 208, 263
Bse118I RCCGGY 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 368
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 3 cut(s) 153, 208, 263
Bsh1285I CGRYCG 1 cut(s) 508
BshFI GGCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 222, 284
BsiHKCI CYCGRG 2 cut(s) 262, 287
BsiSI CCGG 3 cut(s) 154, 209, 247
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 153, 208, 263
BsmAI GTCTC 4 cut(s) 217, 266, 297, 406
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 250
Bso31I GGTCTC 2 cut(s) 217, 406
BsoBI CYCGRG 2 cut(s) 262, 287
Bsp1286I GDGCHC 2 cut(s) 222, 284
Bsp143I GATC 3 cut(s) 64, 444, 505
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 188
BspTNI GGTCTC 2 cut(s) 217, 406
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssMI GATC 3 cut(s) 64, 444, 505
Bst6I CTCTTC 2 cut(s) 18, 121
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 3 cut(s) 67, 447, 508
BstMAI GTCTC 4 cut(s) 217, 266, 297, 406
BstMBI GATC 3 cut(s) 64, 444, 505
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 2 cut(s) 238, 247
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 156
CviAII CATG 1 cut(s) 477
CviJI RGCY 6 cut(s) 188, 220, 232, 241, 250, 320
CviKI_1 RGCY 6 cut(s) 188, 220, 232, 241, 250, 320
DpnI GATC 3 cut(s) 66, 446, 507
DpnII GATC 3 cut(s) 64, 444, 505
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 2 cut(s) 18, 121
EarI CTCTTC 2 cut(s) 18, 121
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 2 cut(s) 217, 406
Eco47I GGWCC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 2 cut(s) 262, 287
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 1 cut(s) 480
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 476
FbaI TGATCA 1 cut(s) 444
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 1 cut(s) 250
HapII CCGG 3 cut(s) 154, 209, 247
Hin1II CATG 1 cut(s) 480
HinfI GANTC 2 cut(s) 290, 348
HpaII CCGG 3 cut(s) 154, 209, 247
Hpy188I TCNGA 4 cut(s) 69, 106, 217, 518
Hpy188III TCNNGA 3 cut(s) 287, 294, 495
HpyCH4V TGCA 3 cut(s) 183, 386, 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 247
Hsp92II CATG 1 cut(s) 480
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 3 cut(s) 64, 444, 505
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 9 cut(s) 167, 193, 208, 222, 242, 260, 340, 429, 433
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 190, 322
MalI GATC 3 cut(s) 66, 446, 507
MboI GATC 3 cut(s) 64, 444, 505
MboII GAAGA 2 cut(s) 5, 108
MhlI GDGCHC 2 cut(s) 222, 284
MluCI AATT 3 cut(s) 5, 108, 467
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 236, 351, 410
MseI TTAA 1 cut(s) 470
MspI CCGG 3 cut(s) 154, 209, 247
MwoI GCNNNNNNNGC 2 cut(s) 238, 247
NdeII GATC 3 cut(s) 64, 444, 505
NlaIII CATG 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 287
PfeI GAWTC 1 cut(s) 348
Ple19I CGATCG 1 cut(s) 508
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 156
PvuI CGATCG 1 cut(s) 508
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 470
Sau3AI GATC 3 cut(s) 64, 444, 505
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 2 cut(s) 222, 284
SetI ASST 6 cut(s) 38, 182, 222, 402, 418, 452
Sfr274I CTCGAG 1 cut(s) 287
SinI GGWCC 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 3 cut(s) 5, 108, 467
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 495
SstI GAGCTC 1 cut(s) 222
TaqI TCGA 6 cut(s) 138, 288, 295, 346, 377, 504
TasI AATT 3 cut(s) 5, 108, 467
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 17, 56, 98
TspGWI ACGGA 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 156
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 2 cut(s) 5, 108
XbaI TCTAGA 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 287
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.