Rorug03G0222900

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
20306303 .. 20308690
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222900.1

Sequence Viewer

Length: 573 bp
ATGGGTTGGGTATGGAGGGACGACGACGGCGAGGTTAATCCGTCTGCGGCTGACATCAGCCCCCGATCGGACGGCGACCGATGCTCCACGAGAAAGATGGTAAGGACGCAGTGCAAGACGGAGGAGGTGGAGCCTGGAAAGTTCATCAGAAAGTGCGAGAAGACCGAGGAGCTTCTCCGCGACTGCGTTGGCCGGCCCGTTGAAGTGGTACAATCCAACAAAGAGTACACCGAAGATGATGTCACGGACCAGGTGCTGAAAGGGTCTGTGCCCTTTGGGTCATCAGACAATGGAGCATTTAACTTCCCTGGACTACAGAGTGATATTGATGAAATTGAACGCAACTTCTTAGGTGGGCTTAGCCGATTCTTTGAAGCTGCTGAGGATATGAAGAATGGATTCTTCAGTTCATTTGGCATTCCACACATCTTTGATGAGGGACCCTCTACTTCACTACCATCTCCGAGGAGAGAGATACCTATTGACAGCCATCGTCAGCGGGAAGCTTTTCCCAGAGCAAATGGCACAAAATCTGGGGAGGTTGATCTTTCTGGGTTGGCAAGAGATGTTTGA

Protein Analysis

190

Amino Acids

21.18

Weight (kDa)

4.75

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 47, 178, 499
AcoI YGGCCR 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 388
AfaI GTAC 2 cut(s) 210, 227
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 3 cut(s) 203, 338, 374
AjnI CCWGG 3 cut(s) 133, 249, 307
AluBI AGCT 3 cut(s) 172, 377, 506
AluI AGCT 3 cut(s) 172, 377, 506
AlwNI CAGNNNCTG 1 cut(s) 256
AoxI GGCC 2 cut(s) 190, 194
ApeKI GCWGC 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 2 cut(s) 398, 507
AspS9I GGNCC 3 cut(s) 195, 247, 440
AvaII GGWCC 2 cut(s) 247, 440
BaeGI GKGCMC 1 cut(s) 273
BauI CACGAG 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 364
BccI CCATC 3 cut(s) 91, 466, 498
BceAI ACGGC 2 cut(s) 43, 88
BciT130I CCWGG 3 cut(s) 135, 251, 309
BfmI CTRYAG 1 cut(s) 314
BisI GCNGC 2 cut(s) 48, 378
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 2 cut(s) 49, 379
Bme1390I CCNGG 3 cut(s) 135, 251, 309
Bme18I GGWCC 2 cut(s) 247, 440
BmgT120I GGNCC 3 cut(s) 195, 247, 440
BmiI GGNNCC 3 cut(s) 132, 441, 442
BmrFI CCNGG 3 cut(s) 135, 251, 309
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 428, 460
Bpu10I CCTNAGC 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 165, 307, 464
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 192
BseBI CCWGG 3 cut(s) 135, 251, 309
BseDI CCNNGG 3 cut(s) 165, 307, 464
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 3 cut(s) 137, 182, 481
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 180
Bsh1285I CGRYCG 2 cut(s) 68, 79
BshFI GGCC 2 cut(s) 192, 196
BsiEI CGRYCG 2 cut(s) 68, 79
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 2 cut(s) 32, 453
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 32, 453
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 192, 196
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 65, 544
Bsp1720I GCTNAGC 1 cut(s) 359
BspACI CCGC 3 cut(s) 47, 178, 499
BspANI GGCC 2 cut(s) 192, 196
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 3 cut(s) 132, 441, 442
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 3 cut(s) 165, 307, 464
BssMI GATC 2 cut(s) 65, 544
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
Bst2UI CCWGG 3 cut(s) 135, 251, 309
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 349, 359, 381
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 2 cut(s) 68, 547
BstMBI GATC 2 cut(s) 65, 544
BstMCI CGRYCG 2 cut(s) 68, 79
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 3 cut(s) 135, 251, 309
BstSCI CCNGG 3 cut(s) 133, 249, 307
BstSFI CTRYAG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 192, 196
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 3 cut(s) 195, 247, 440
CseI GACGC 1 cut(s) 115
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 2 cut(s) 209, 226
CviQI GTAC 2 cut(s) 209, 226
DdeI CTNAG 3 cut(s) 349, 359, 381
DpnI GATC 2 cut(s) 67, 546
DpnII GATC 2 cut(s) 65, 544
EaeI YGGCCR 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 247, 440
Eco57I CTGAAG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 133, 249, 307
FaiI YATR 2 cut(s) 13, 389
FaqI GGGAC 2 cut(s) 32, 453
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 48, 378
FseI GGCCGGCC 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 48, 378
GluI GCNGC 2 cut(s) 48, 378
HaeIII GGCC 2 cut(s) 192, 196
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 2 cut(s) 366, 399
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 4 cut(s) 70, 149, 286, 465
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 2 cut(s) 26, 29
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 3 cut(s) 349, 359, 381
KflI GGGWCCC 1 cut(s) 440
KroI GCCGGC 1 cut(s) 192
KroNI GCCGGC 1 cut(s) 194
Kzo9I GATC 2 cut(s) 65, 544
LmnI GCTCC 4 cut(s) 89, 130, 169, 293
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 71
MabI ACCWGGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 67, 546
MboI GATC 2 cut(s) 65, 544
MboII GAAGA 4 cut(s) 172, 245, 394, 403
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 192
MroXI GAANNNNTTC 2 cut(s) 398, 507
MseI TTAA 2 cut(s) 36, 300
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 3 cut(s) 135, 251, 309
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 3 cut(s) 135, 251, 309
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 194
NdeII GATC 2 cut(s) 65, 544
NgoMIV GCCGGC 1 cut(s) 192
NlaIV GGNNCC 3 cut(s) 132, 441, 442
NmuCI GTSAC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 417
PdiI GCCGGC 1 cut(s) 194
PdmI GAANNNNTTC 2 cut(s) 398, 507
PfeI GAWTC 2 cut(s) 366, 399
PkrI GCNGC 2 cut(s) 49, 379
Ple19I CGATCG 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 3 cut(s) 133, 249, 307
PspGI CCWGG 3 cut(s) 133, 249, 307
PspN4I GGNNCC 3 cut(s) 132, 441, 442
PspPI GGNCC 3 cut(s) 195, 247, 440
PspPPI RGGWCCY 1 cut(s) 440
PstNI CAGNNNCTG 1 cut(s) 256
PvuI CGATCG 1 cut(s) 68
RigI GGCCGGCC 1 cut(s) 196
RsaI GTAC 2 cut(s) 210, 227
RsaNI GTAC 2 cut(s) 209, 226
SaqAI TTAA 2 cut(s) 36, 300
SatI GCNGC 2 cut(s) 48, 378
Sau3AI GATC 2 cut(s) 65, 544
Sau96I GGNCC 3 cut(s) 195, 247, 440
ScrFI CCNGG 3 cut(s) 135, 251, 309
SduI GDGCHC 1 cut(s) 273
SetI ASST 9 cut(s) 36, 129, 174, 255, 355, 379, 481, 508, 543
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 314
SinI GGWCC 2 cut(s) 247, 440
Sse9I AATT 1 cut(s) 333
SsiI CCGC 3 cut(s) 47, 178, 499
StyD4I CCNGG 3 cut(s) 133, 249, 307
TaqII GACCGA 2 cut(s) 93, 179
TasI AATT 1 cut(s) 333
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 366, 399
Tru1I TTAA 2 cut(s) 36, 300
Tru9I TTAA 2 cut(s) 36, 300
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 133, 345, 399, 404
TspGWI ACGGA 3 cut(s) 30, 134, 260
TspRI CASTG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 247, 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmnI GAANNNNTTC 2 cut(s) 398, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.