Rw0G017350

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00776
OG0000116
Physical Location & Seq
Reverse (-)
4946 .. 16171
11226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017350.1

Sequence Viewer

Length: 3108 bp
ATGGCTGAGGAGAATCCCTTGGATGGAGATGCAATAACCAAACAAGAAAGTGCAACAAATAGCCATCCAGCAGTGACGGAGGGTTCCAACGAAAACAGACAAGATACAATCAAGAGCAAGGAGGATGGAACTAAAACAGCTCCGCTTTACAAACTTTTCTATTTTGCCGATTCCATGGATTACCTGTTAATGTCTGTTAGTACAATTAGCGCTATTGGTAATGGACTCTGTATGCCTCTACTGACCAAAATCTCTGGAGATCTAATTACTTCTTTTAGAGAAACTGGGAATAACAAGAGAGTGGCTGATGCAGTTTCCAAGGTGGCTCTAAAGTATGTTTACTTGGCTCTTGGGGGTGCTGCTGCAGCATTTCTACAGATGTCATGCGGGATGAGCACTGGAGAGAGACGGACCATACTGAGGCAAGATGTCATCTTTTTTTATCAAGAAATCAACTCTGGGGAAATTCTTGGGAGGATGTCAGGTGATACTCTGCTCATTAAAGAGGCAATGAGCGAGAATCATTTTTTTAAGGGATGGCTTCTCACCCTTGTCATTCTATCCTCTATTCCCCCTCTTGTCTTATCTGGTGCTGTCATGAACCATTTCATGGTGAAATTGGCGTCCCATGGACAAGCTGCATATTCAGGAGGAGCAATTGTGGTAGAGGAGACAATTGGTTCTATCAGAACTGTATTTCACATGCACGTTGCATCGTTCACAGGGGAGAAGCAAGCTATATCTAACTACAATAACTCCTTGAATAAAGCTTACAAGTCCGGTGTGCAAGAGTGTTGGGCATCTGGTTTGGGTTCTGGTGTACTTATGCTTTTGGTATTCTGTACTTATGCTTTGCCATCTCTTGGGAAAGTGTCTCCTTGCATCACTGCATTTGCTCCTGGACAAGCTTCAGCTGATAAGATGTTTGAGACAATTAACAGAAAGCCAAAGATAGATGCGTATGATACTAATGGGAGGGTATTACAAGATATTCGAGGAGACATAGAACTGCGGGAAGTTTGTTTTAGTTATCCCACAAGACTGGATGAGCAAATATTCCATGGATTTTGTGTCTCAATACCTAGTGGTGCAACTGCTGCTTTGGTTGGAGAAAGCGGAAGTGGTAAATCTACTGTACTCAGTTTGATTGAGAGATTTTATGACCCCCAGGCTGGTGAAGTTCTTATTGACGGTGATGGTGCTACTACTGAAGAGATAGCAACTGCTGCTGAGCTTGCCAATGCTGCAAAATTCATAGCTTTACTGCCTCAGGGAATAGATACACTGGTTGGTGAGCATGGAACTCAACTATCTGGGGGACAAAAGCAAAGAGTTGCTATAGCTAGAGTAATTCTGAAGAAGCCAAGAATTTTACTTTTAGATGAAGCCACAAGCGCTCTTAACATAGAATCTGAAAAAGTTCAACTCGACCACCTGTGGTGGTTGGACAGAATTATGGTTGACCGGACTACTATCATTCTAAGCAGGGATCCCGATGGAGCATATAGCAGGCTTATAAGGTTGCAAGAAACTAGTTCTGTGTCAGAACACTCGGAACATACTTGTCTAAGTTCTGAGAAATCATCTCCAAGAAGTGGCAGTCTTCACTCATTCTTAATCTCATATGGTAATCCTACTGCAAGCGGTATACTTGAAGCAACAACTGTAGAACCTGATAATTCAAAGTTTTGGGCAACAATCTTTGTTATTCTTGGAGTGGTATCTTTCTTGGCACAATCGTCAAGAGCATGCCTCTTTGCTGTGGCTGGTTGCCGAAGGGGGGTAAACATGGAAGTAAGTTGGTTTGATGAAGCTGAGAACTCAATTGGTGCAATTGGGACAAGGCTTTCTACGGATGCAGCAGCTTCTTTGAGAGGGCTTGTTGGAGATGTTCTTGGTTTGGTGATTCAGAATACAGCAACAGCAATTGCTGGGATGATTATTGTTTTTGGTGCGAATTGGCAACTTTCTCTTCTAATGCTTGTTCTGTTACCTTTATTAGGAGTAAATGGATATTTTCAAGTCCAGTACATGAAAGGATTTAGTGCAGATGCAAAGAAAATGTACGAGGACGCAAGCCAAGTAGCTAGTGATGCTGTGGGGAGTATTCGGACAATTGCTTCCTTTTGTGCTGAACAGAAGGTGATGGAGTTGTACAAGAAAAAATGTGAAGGCCCTATTAAGACGGGGATAAGACAAGGGTTGTTTTCAGTGTTCGCCGTAATTTTTTATATTGGAGGTCTACTTCTGCAGTTTTCCAGGAAAGTTTTCTTTGCTGTCACTATGGCTTCTGTTGGACTCGCCCAGTCAAGCTCCCTAGCACCTGATGTAAATAAAGGAAAGGGTTCTGCTGCTTCAATATTCGCGATTCTTGACCGGAAATCAAGAATAGACTCTAGTGATAACTCCGGCATGACAATAGAAAATACAATTGGTCTGGTTGGTGAAAGTGGAAGTGGGAAATCGACAGTGGTCTCTTTGCTGCAGAGATTTTACGACCCCAACTCTGGTCACATTACATTGGATGGAATCGAAATCCAGAAACTACAGTTTAAGTGGTTGAGACAGCAAATTGGGCTGGTGAGCCAGGAGGCTCTATTGTTTAATTACACTATCCGAGCCAACATTGCATATGGAAAGGATGGAGAGGCAACCGAGGCTGAAATTATAGCGGCTGCAGAACTCGCAAATGAACACCAGTTCATTAGTAGTTTACAACATGGTTACGATACAATAACTGGAGAGCGAGGGGTCCAATTGTCCTGCGGACAGAAGCAAAGAGTTTCTATTGCAAGAGCTATTATGAAGGCACACAATATATTACTACTAGATGAAGCCACAAGTGCTCTTGATGCTGAATCTGAACGTGTGGTTCAAGATGCATTGGACCGAATTATGGTGGATCGGACAATAATCGTGGTTGCTCACCTGTTGTCCACAATCAAGGGTGCAGATTTGATTGCTGTGGTAAAAAATGGAGCCATTGCAGAGAAAGGAAAGCATGAAACTTTGATCAATATCAGCAATGGCATTAATTTATGCTTCTTTGGTAGAATTACATGCAAGTGCCTCATTTTAGAGAGCTCTCTATTAATCTTTGTGGAATAA

Protein Analysis

1035

Amino Acids

111.7

Weight (kDa)

5.81

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 66 - 176 1.3e-06 ABC transporter transmembrane region
ABC_membrane PF00664 176 - 285 1e-12 ABC transporter transmembrane region
ABC_tran PF00005 358 - 405 3.1e-10 ABC transporter
ABC_ATPase PF09818 359 - 469 7.4e-06 P-loop domain
ABC_tran PF00005 417 - 465 5.1e-11 ABC transporter
ABC_membrane PF00664 559 - 740 2.2e-27 ABC transporter transmembrane region
ABC_tran PF00005 809 - 948 1.3e-27 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1517
AccB7I CCANNNNNTGG 3 cut(s) 610, 863, 1595
AccI GTMKAC 2 cut(s) 1648, 2242
AccII CGCG 1 cut(s) 2366
AciI CCGC 7 cut(s) 143, 387, 1012, 1116, 1644, 2672, 2766
AclWI GGATC 3 cut(s) 1484, 1497, 2910
AcsI RAATTY 3 cut(s) 465, 1250, 1368
AcuI CTGAAG 3 cut(s) 894, 1230, 1376
AcyI GRCGYC 1 cut(s) 623
AfaI GTAC 7 cut(s) 202, 822, 844, 1137, 2030, 2066, 2156
AfeI AGCGCT 2 cut(s) 211, 1396
AflIII ACRYGT 1 cut(s) 2866
AgsI TTSAA 7 cut(s) 763, 1424, 1655, 1683, 2021, 2358, 2876
AhlI ACTAGT 1 cut(s) 1532
AjnI CCWGG 4 cut(s) 898, 1167, 2258, 2586
AjuI GAANNNNNNNTTGG 2 cut(s) 2415, 2447
Alw21I GWGCWC 3 cut(s) 398, 2848, 3086
Alw26I GTCTC 8 cut(s) 400, 665, 879, 923, 993, 1078, 2479, 2557
AlwI GGATC 3 cut(s) 1484, 1497, 2910
Aor51HI AGCGCT 2 cut(s) 211, 1396
AoxI GGCC 1 cut(s) 2173
ApoI RAATTY 3 cut(s) 465, 1250, 1368
AseI ATTAAT 2 cut(s) 3033, 3092
Asp700I GAANNNNTTC 4 cut(s) 605, 1419, 2267, 2344
AspLEI GCGC 2 cut(s) 212, 1397
AspS9I GGNCC 4 cut(s) 411, 2174, 2752, 2887
AvaII GGWCC 3 cut(s) 411, 2752, 2887
AxyI CCTNAGG 1 cut(s) 1269
BaeI ACNNNNGTAYC 2 cut(s) 1272, 1305
BamHI GGATCC 1 cut(s) 1489
BanII GRGCYC 1 cut(s) 3086
BbsI GAAGAC 1 cut(s) 1595
Bbv12I GWGCWC 3 cut(s) 398, 2848, 3086
BbvCI CCTCAGC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 2204
BciT130I CCWGG 4 cut(s) 900, 1169, 2260, 2588
BclI TGATCA 1 cut(s) 3012
BcoDI GTCTC 8 cut(s) 400, 665, 879, 923, 993, 1078, 2479, 2557
BcuI ACTAGT 1 cut(s) 1532
BfaI CTAG 7 cut(s) 1083, 1344, 1533, 2088, 2318, 2397, 2828
BfmI CTRYAG 8 cut(s) 363, 374, 1338, 1665, 2249, 2483, 2546, 2676
BfoI RGCGCY 2 cut(s) 213, 1398
BglII AGATCT 1 cut(s) 259
BlpI GCTNAGC 1 cut(s) 1230
Bme1390I CCNGG 4 cut(s) 900, 1169, 2260, 2588
Bme18I GGWCC 3 cut(s) 411, 2752, 2887
BmgT120I GGNCC 4 cut(s) 411, 2174, 2752, 2887
BmiI GGNNCC 4 cut(s) 85, 1491, 2753, 2980
BmrFI CCNGG 4 cut(s) 900, 1169, 2260, 2588
BmrI ACTGGG 2 cut(s) 294, 2299
BmuI ACTGGG 2 cut(s) 294, 2299
BoxI GACNNNNGTC 1 cut(s) 2471
BpiI GAAGAC 1 cut(s) 1595
BplI GAGNNNNNCTC 2 cut(s) 1737, 1769
BpmI CTGGAG 3 cut(s) 276, 420, 2760
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 1230
BsaBI GATNNNNATC 1 cut(s) 3017
BsaHI GRCGYC 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 2479
BsaJI CCNNGG 7 cut(s) 18, 174, 318, 628, 1060, 1167, 2655
BsaWI WCCGGW 3 cut(s) 779, 1464, 2376
BsaXI ACNNNNNCTCC 4 cut(s) 645, 675, 740, 770
Bse1I ACTGG 8 cut(s) 289, 403, 1047, 1290, 2026, 2305, 2698, 2743
Bse21I CCTNAGG 1 cut(s) 1269
Bse3DI GCAATG 4 cut(s) 516, 2625, 2982, 3031
Bse8I GATNNNNATC 1 cut(s) 3017
BseBI CCWGG 4 cut(s) 900, 1169, 2260, 2588
BseDI CCNNGG 7 cut(s) 18, 174, 318, 628, 1060, 1167, 2655
BseJI GATNNNNATC 1 cut(s) 3017
BseMI GCAATG 4 cut(s) 516, 2625, 2982, 3031
BseMII CTCAG 6 cut(s) 410, 1153, 1221, 1283, 1566, 1806
BseNI ACTGG 8 cut(s) 289, 403, 1047, 1290, 2026, 2305, 2698, 2743
BseRI GAGGAG 4 cut(s) 23, 666, 683, 1011
BseYI CCCAGC 1 cut(s) 1931
BsgI GTGCAG 2 cut(s) 2067, 2970
Bsh1236I CGCG 1 cut(s) 2366
BshFI GGCC 1 cut(s) 2175
BsiHKAI GWGCWC 3 cut(s) 398, 2848, 3086
BsiSI CCGG 4 cut(s) 780, 1465, 2377, 2409
BslFI GGGAC 3 cut(s) 610, 1332, 1852
BsmAI GTCTC 8 cut(s) 400, 665, 879, 923, 993, 1078, 2479, 2557
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 3 cut(s) 610, 1332, 1852
BsnI GGCC 1 cut(s) 2175
Bso31I GGTCTC 1 cut(s) 2479
Bsp1286I GDGCHC 3 cut(s) 398, 2848, 3086
Bsp1407I TGTACA 1 cut(s) 2154
Bsp143I GATC 4 cut(s) 259, 1489, 2902, 3012
Bsp1720I GCTNAGC 1 cut(s) 1230
Bsp19I CCATGG 3 cut(s) 174, 628, 1060
Bsp68I TCGCGA 1 cut(s) 2366
BspACI CCGC 7 cut(s) 143, 387, 1012, 1116, 1644, 2672, 2766
BspANI GGCC 1 cut(s) 2175
BspCNI CTCAG 6 cut(s) 411, 1152, 1222, 1282, 1567, 1807
BspFNI CGCG 1 cut(s) 2366
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 4 cut(s) 85, 1491, 2753, 2980
BspMAI CTGCAG 4 cut(s) 367, 2253, 2487, 2680
BspPI GGATC 3 cut(s) 1484, 1497, 2910
BspTNI GGTCTC 1 cut(s) 2479
BsrDI GCAATG 4 cut(s) 516, 2625, 2982, 3031
BsrGI TGTACA 1 cut(s) 2154
BsrI ACTGG 8 cut(s) 289, 403, 1047, 1290, 2026, 2305, 2698, 2743
BssECI CCNNGG 7 cut(s) 18, 174, 318, 628, 1060, 1167, 2655
BssMI GATC 4 cut(s) 259, 1489, 2902, 3012
BssNAI GTATAC 1 cut(s) 1649
BssNI GRCGYC 1 cut(s) 623
BssT1I CCWWGG 5 cut(s) 18, 174, 318, 628, 1060
Bst1107I GTATAC 1 cut(s) 1649
Bst2UI CCWGG 4 cut(s) 900, 1169, 2260, 2588
Bst4CI ACNGT 6 cut(s) 694, 1135, 1193, 1666, 2470, 2550
Bst6I CTCTTC 2 cut(s) 1206, 1977
BstACI GRCGYC 1 cut(s) 623
BstAPI GCANNNNNTGC 2 cut(s) 1097, 1226
BstAUI TGTACA 1 cut(s) 2154
BstC8I GCNNGC 6 cut(s) 735, 1236, 1511, 1642, 1750, 2077
BstDEI CTNAG 9 cut(s) 6, 419, 1139, 1230, 1269, 1481, 1568, 1575, 1815
BstDSI CCRYGG 3 cut(s) 174, 628, 1060
BstENI CCTNNNNNAGG 1 cut(s) 1998
BstFNI CGCG 1 cut(s) 2366
BstH2I RGCGCY 2 cut(s) 213, 1398
BstHHI GCGC 2 cut(s) 212, 1397
BstKTI GATC 4 cut(s) 262, 1492, 2905, 3015
BstMAI GTCTC 8 cut(s) 400, 665, 879, 923, 993, 1078, 2479, 2557
BstMBI GATC 4 cut(s) 259, 1489, 2902, 3012
BstNI CCWGG 4 cut(s) 900, 1169, 2260, 2588
BstNSI RCATGY 3 cut(s) 706, 1752, 3063
BstPAI GACNNNNGTC 1 cut(s) 2471
BstSCI CCNGG 4 cut(s) 898, 1167, 2258, 2586
BstSFI CTRYAG 8 cut(s) 363, 374, 1338, 1665, 2249, 2483, 2546, 2676
BstUI CGCG 1 cut(s) 2366
BstV2I GAAGAC 1 cut(s) 1595
BstX2I RGATCY 2 cut(s) 259, 1489
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 2 cut(s) 259, 1489
BstZ17I GTATAC 1 cut(s) 1649
Bsu36I CCTNAGG 1 cut(s) 1269
BsuRI GGCC 1 cut(s) 2175
BtgI CCRYGG 3 cut(s) 174, 628, 1060
BtsI GCAGTG 2 cut(s) 78, 885
BtsIMutI CAGTG 6 cut(s) 78, 396, 885, 1283, 2217, 2475
BtuMI TCGCGA 1 cut(s) 2366
Cac8I GCNNGC 6 cut(s) 735, 1236, 1511, 1642, 1750, 2077
CciI TCATGA 1 cut(s) 597
CfoI GCGC 2 cut(s) 212, 1397
Cfr13I GGNCC 4 cut(s) 411, 2174, 2752, 2887
CseI GACGC 2 cut(s) 612, 2081
Csp6I GTAC 7 cut(s) 201, 821, 843, 1136, 2029, 2065, 2155
CspCI CAANNNNNGTGG 2 cut(s) 2898, 2933
CviQI GTAC 7 cut(s) 201, 821, 843, 1136, 2029, 2065, 2155
DdeI CTNAG 9 cut(s) 6, 419, 1139, 1230, 1269, 1481, 1568, 1575, 1815
DpnI GATC 4 cut(s) 261, 1491, 2904, 3014
DpnII GATC 4 cut(s) 259, 1489, 2902, 3012
Eam1104I CTCTTC 2 cut(s) 1206, 1977
EarI CTCTTC 2 cut(s) 1206, 1977
Ecl136II GAGCTC 1 cut(s) 3084
Eco130I CCWWGG 5 cut(s) 18, 174, 318, 628, 1060
Eco24I GRGCYC 1 cut(s) 3086
Eco31I GGTCTC 1 cut(s) 2479
Eco47I GGWCC 3 cut(s) 411, 2752, 2887
Eco47III AGCGCT 2 cut(s) 211, 1396
Eco53kI GAGCTC 1 cut(s) 3084
Eco57I CTGAAG 3 cut(s) 894, 1230, 1376
Eco81I CCTNAGG 1 cut(s) 1269
EcoICRI GAGCTC 1 cut(s) 3084
EcoNI CCTNNNNNAGG 1 cut(s) 1998
EcoO109I RGGNCCY 1 cut(s) 2174
EcoRII CCWGG 4 cut(s) 898, 1167, 2258, 2586
EcoT14I CCWWGG 5 cut(s) 18, 174, 318, 628, 1060
EcoT22I ATGCAT 1 cut(s) 2884
EcoT38I GRGCYC 1 cut(s) 3086
ErhI CCWWGG 5 cut(s) 18, 174, 318, 628, 1060
Esp3I CGTCTC 1 cut(s) 400
FaqI GGGAC 3 cut(s) 610, 1332, 1852
FauI CCCGC 2 cut(s) 380, 1005
FauNDI CATATG 2 cut(s) 1624, 2632
FbaI TGATCA 1 cut(s) 3012
FblI GTMKAC 2 cut(s) 1648, 2242
FriOI GRGCYC 1 cut(s) 3086
FspBI CTAG 7 cut(s) 1083, 1344, 1533, 2088, 2318, 2397, 2828
GlaI GCGC 2 cut(s) 211, 1396
GsaI CCCAGC 1 cut(s) 1935
GsuI CTGGAG 3 cut(s) 276, 420, 2760
HaeII RGCGCY 2 cut(s) 213, 1398
HaeIII GGCC 1 cut(s) 2175
HapII CCGG 4 cut(s) 780, 1465, 2377, 2409
HgaI GACGC 2 cut(s) 612, 2081
HhaI GCGC 2 cut(s) 212, 1397
Hin1I GRCGYC 1 cut(s) 623
Hin6I GCGC 2 cut(s) 210, 1395
HinP1I GCGC 2 cut(s) 210, 1395
HincII GTYRAC 1 cut(s) 1462
HindII GTYRAC 1 cut(s) 1462
HindIII AAGCTT 2 cut(s) 768, 906
HpaII CCGG 4 cut(s) 780, 1465, 2377, 2409
Hpy166II GTNNAC 9 cut(s) 340, 720, 821, 1462, 1649, 1786, 2243, 2714, 2937
Hpy8I GTNNAC 9 cut(s) 340, 720, 821, 1462, 1649, 1786, 2243, 2714, 2937
HpyAV CCTTC 4 cut(s) 1770, 2134, 2165, 2800
HpyCH4III ACNGT 6 cut(s) 694, 1135, 1193, 1666, 2470, 2550
HpyCH4IV ACGT 2 cut(s) 708, 2866
HpyF3I CTNAG 9 cut(s) 6, 419, 1139, 1230, 1269, 1481, 1568, 1575, 1815
HpySE526I ACGT 2 cut(s) 708, 2866
Hsp92I GRCGYC 1 cut(s) 623
HspAI GCGC 2 cut(s) 210, 1395
Ksp22I TGATCA 1 cut(s) 3012
Kzo9I GATC 4 cut(s) 259, 1489, 2902, 3012
LmnI GCTCC 6 cut(s) 145, 653, 901, 1499, 2318, 2978
MaeI CTAG 7 cut(s) 1083, 1344, 1533, 2088, 2318, 2397, 2828
MaeII ACGT 2 cut(s) 708, 2866
MaeIII GTNAC 5 cut(s) 73, 1989, 2278, 2510, 2723
MalI GATC 4 cut(s) 261, 1491, 2904, 3014
MboI GATC 4 cut(s) 259, 1489, 2902, 3012
MboII GAAGA 4 cut(s) 1223, 1369, 1595, 1964
MfeI CAATTG 8 cut(s) 657, 675, 1824, 1833, 1926, 2115, 2430, 2756
MflI RGATCY 2 cut(s) 259, 1489
MhlI GDGCHC 3 cut(s) 398, 2848, 3086
MlyI GAGTC 3 cut(s) 219, 2292, 2387
MmeI TCCRAC 5 cut(s) 111, 1087, 1425, 1864, 2275
Mph1103I ATGCAT 1 cut(s) 2884
MroXI GAANNNNTTC 4 cut(s) 605, 1419, 2267, 2344
MslI CAYNNNNRTG 1 cut(s) 3064
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 4 cut(s) 780, 1465, 2377, 2409
MspR9I CCNGG 4 cut(s) 900, 1169, 2260, 2588
MunI CAATTG 8 cut(s) 657, 675, 1824, 1833, 1926, 2115, 2430, 2756
MvaI CCWGG 4 cut(s) 900, 1169, 2260, 2588
MvnI CGCG 1 cut(s) 2366
NcoI CCATGG 3 cut(s) 174, 628, 1060
NdeI CATATG 2 cut(s) 1624, 2632
NdeII GATC 4 cut(s) 259, 1489, 2902, 3012
NlaIV GGNNCC 4 cut(s) 85, 1491, 2753, 2980
NmuCI GTSAC 3 cut(s) 73, 2278, 2510
NruI TCGCGA 1 cut(s) 2366
NsiI ATGCAT 1 cut(s) 2884
NspI RCATGY 3 cut(s) 706, 1752, 3063
PaeI GCATGC 1 cut(s) 1752
PagI TCATGA 1 cut(s) 597
PdmI GAANNNNTTC 4 cut(s) 605, 1419, 2267, 2344
PfeI GAWTC 8 cut(s) 13, 170, 520, 1409, 1906, 2368, 2529, 2858
PflMI CCANNNNNTGG 3 cut(s) 610, 863, 1595
PfoI TCCNGGA 2 cut(s) 898, 2258
PleI GAGTC 3 cut(s) 219, 2292, 2387
PpsI GAGTC 3 cut(s) 219, 2292, 2387
PshAI GACNNNNGTC 1 cut(s) 2471
PshBI ATTAAT 2 cut(s) 3033, 3092
PsiI TTATAA 1 cut(s) 1517
Psp124BI GAGCTC 1 cut(s) 3086
Psp6I CCWGG 4 cut(s) 898, 1167, 2258, 2586
PspFI CCCAGC 1 cut(s) 1931
PspGI CCWGG 4 cut(s) 898, 1167, 2258, 2586
PspN4I GGNNCC 4 cut(s) 85, 1491, 2753, 2980
PspPI GGNCC 4 cut(s) 411, 2174, 2752, 2887
PstI CTGCAG 4 cut(s) 367, 2253, 2487, 2680
PsuI RGATCY 2 cut(s) 259, 1489
PvuII CAGCTG 1 cut(s) 914
RruI TCGCGA 1 cut(s) 2366
RsaI GTAC 7 cut(s) 202, 822, 844, 1137, 2030, 2066, 2156
RsaNI GTAC 7 cut(s) 201, 821, 843, 1136, 2029, 2065, 2155
RseI CAYNNNNRTG 1 cut(s) 3064
SacI GAGCTC 1 cut(s) 3086
Sau3AI GATC 4 cut(s) 259, 1489, 2902, 3012
Sau96I GGNCC 4 cut(s) 411, 2174, 2752, 2887
SchI GAGTC 3 cut(s) 219, 2292, 2387
ScrFI CCNGG 4 cut(s) 900, 1169, 2260, 2588
SduI GDGCHC 3 cut(s) 398, 2848, 3086
SfcI CTRYAG 8 cut(s) 363, 374, 1338, 1665, 2249, 2483, 2546, 2676
SinI GGWCC 3 cut(s) 411, 2752, 2887
SmiMI CAYNNNNRTG 1 cut(s) 3064
SpeI ACTAGT 1 cut(s) 1532
SphI GCATGC 1 cut(s) 1752
SsiI CCGC 7 cut(s) 143, 387, 1012, 1116, 1644, 2672, 2766
SspI AATATT 2 cut(s) 1056, 2361
SspMI CTAG 7 cut(s) 1083, 1344, 1533, 2088, 2318, 2397, 2828
SstI GAGCTC 1 cut(s) 3086
StyD4I CCNGG 4 cut(s) 898, 1167, 2258, 2586
StyI CCWWGG 5 cut(s) 18, 174, 318, 628, 1060
TaaI ACNGT 6 cut(s) 694, 1135, 1193, 1666, 2470, 2550
TaiI ACGT 2 cut(s) 711, 2869
TaqI TCGA 4 cut(s) 994, 1428, 2465, 2532
TaqII GACCGA 1 cut(s) 2904
TatI WGTACW 6 cut(s) 200, 820, 842, 1135, 2028, 2154
TauI GCSGC 1 cut(s) 2675
TfiI GAWTC 8 cut(s) 13, 170, 520, 1409, 1906, 2368, 2529, 2858
TscAI CASTG 6 cut(s) 78, 403, 892, 1290, 2217, 2475
TseFI GTSAC 3 cut(s) 73, 2278, 2510
Tsp45I GTSAC 3 cut(s) 73, 2278, 2510
TspGWI ACGGA 3 cut(s) 92, 424, 1868
TspRI CASTG 6 cut(s) 78, 403, 892, 1290, 2217, 2475
Van91I CCANNNNNTGG 3 cut(s) 610, 863, 1595
VpaK11BI GGWCC 3 cut(s) 411, 2752, 2887
VspI ATTAAT 2 cut(s) 3033, 3092
XagI CCTNNNNNAGG 1 cut(s) 1998
XapI RAATTY 3 cut(s) 465, 1250, 1368
XceI RCATGY 3 cut(s) 706, 1752, 3063
XmiI GTMKAC 2 cut(s) 1648, 2242
XmnI GAANNNNTTC 4 cut(s) 605, 1419, 2267, 2344
XspI CTAG 7 cut(s) 1083, 1344, 1533, 2088, 2318, 2397, 2828
Zsp2I ATGCAT 1 cut(s) 2884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.