Rw4G023620

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
49256387 .. 49259899
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023620.1

Sequence Viewer

Length: 750 bp
ATGTTTGAGACAATCAACAGAAAGCCAGATATAGATGTGTATGACACCAGAGGACTAAAATCACAAGAGATCCGCGGAGACATTGAACTGAGGGATGTTTATTTTAGTTATCCCGCAAGACCGGATGAGCAAATATTCCTCGGATTTTCTCTCTCGATACCTAGTGGTGCAACTGTTTCTTTGGTTGGACAAAGCGGAAGTGGTAAATCAACTGTCATTAGTTTGATTGAGAGATTTTATGATCCCCAGGCTGGTGAAGTTCTTATTGATGGGAACAATCTAAAAGAGTTTCAACTGAAATGGATTAGACAGAAAATAGGCCTTGTAAGCCAGGAACCAGTTTTGTTTACTGATACAATGGTTGGAGAACATGGAACTCAGCTATCTGGGGGCCAAAAGCAGAGAATTGCCATAGCAAGAGCAATTCTGAAGAACCCAAGAATTCTGCTTTTGGATGAAGCAACAAGCGCTCTTGATGCAGAATCTGAGAGAATATTACTACTAGATGAAGCCACCAGTGCTCTTGATGCTGAATCCGAAAGAGTGGTTCAAGATGCACTGGATCGAGTTATGGTGGATCGAACTACAGTGGTGGTTGCCCATCAGCTATCCACAATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGAAACTCTGATCGGTATCAAGGGTGGAACTTATGCTTCTTTGGTAGCACTACATGCAAGTGCCTCATCTTAG

Protein Analysis

249

Amino Acids

27.08

Weight (kDa)

5.21

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 49 - 123 2.9e-17 ABC transporter
ABC_tran PF00005 116 - 156 1.5e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 73, 75, 114, 195
AclWI GGATC 4 cut(s) 64, 236, 570, 585
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 449
AfeI AGCGCT 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 3 cut(s) 86, 293, 551
AjnI CCWGG 2 cut(s) 246, 330
AluBI AGCT 2 cut(s) 382, 607
AluI AGCT 2 cut(s) 382, 607
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 2, 72
AlwI GGATC 4 cut(s) 64, 236, 570, 585
AlwNI CAGNNNCTG 1 cut(s) 485
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 2 cut(s) 319, 391
ApoI RAATTY 1 cut(s) 441
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 266, 655
BaeI ACNNNNGTAYC 2 cut(s) 345, 378
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 2 cut(s) 263, 609
BciT130I CCWGG 2 cut(s) 248, 332
BcoDI GTCTC 2 cut(s) 2, 72
BfaI CTAG 2 cut(s) 162, 503
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 471
Bme1390I CCNGG 2 cut(s) 248, 332
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 336, 392
BmrFI CCNGG 2 cut(s) 248, 332
BmsI GCATC 3 cut(s) 466, 517, 544
BsaBI GATNNNNATC 1 cut(s) 692
BsaJI CCNNGG 3 cut(s) 73, 139, 246
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 338, 516, 564
Bse3DI GCAATG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 692
BseBI CCWGG 2 cut(s) 248, 332
BseDI CCNNGG 3 cut(s) 73, 139, 246
BseGI GGATG 3 cut(s) 100, 130, 460
BseJI GATNNNNATC 1 cut(s) 692
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 3 cut(s) 80, 392, 477
BseNI ACTGG 3 cut(s) 338, 516, 564
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 321, 393
BsiHKAI GWGCWC 1 cut(s) 523
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 2, 72
BsnI GGCC 2 cut(s) 321, 393
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 5 cut(s) 69, 241, 562, 577, 687
BspACI CCGC 4 cut(s) 73, 75, 114, 195
BspANI GGCC 2 cut(s) 321, 393
BspCNI CTCAG 3 cut(s) 81, 391, 478
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 336, 392
BspPI GGATC 4 cut(s) 64, 236, 570, 585
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 3 cut(s) 338, 516, 564
BssECI CCNNGG 3 cut(s) 73, 139, 246
BssMI GATC 5 cut(s) 69, 241, 562, 577, 687
Bst2UI CCWGG 2 cut(s) 248, 332
Bst4CI ACNGT 3 cut(s) 175, 214, 589
BstAPI GCANNNNNTGC 1 cut(s) 731
BstDEI CTNAG 4 cut(s) 89, 378, 486, 747
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 100, 130, 460
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 5 cut(s) 72, 244, 565, 580, 690
BstMAI GTCTC 2 cut(s) 2, 72
BstMBI GATC 5 cut(s) 69, 241, 562, 577, 687
BstMWI GCNNNNNNNGC 6 cut(s) 327, 467, 476, 518, 527, 731
BstNI CCWGG 2 cut(s) 248, 332
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 246, 330
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 2 cut(s) 321, 393
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 3 cut(s) 100, 130, 460
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 4 cut(s) 523, 557, 594, 645
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 391
Cfr42I CCGCGG 1 cut(s) 76
CviAII CATG 3 cut(s) 371, 677, 731
CviJI RGCY 8 cut(s) 25, 251, 321, 330, 382, 393, 512, 607
CviKI_1 RGCY 8 cut(s) 25, 251, 321, 330, 382, 393, 512, 607
DdeI CTNAG 4 cut(s) 89, 378, 486, 747
DpnI GATC 5 cut(s) 71, 243, 564, 579, 689
DpnII GATC 5 cut(s) 69, 241, 562, 577, 687
Eco147I AGGCCT 1 cut(s) 321
Eco47III AGCGCT 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 2 cut(s) 246, 330
FaeI CATG 3 cut(s) 374, 680, 734
FaiI YATR 9 cut(s) 32, 42, 240, 372, 413, 572, 678, 711, 732
FatI CATG 3 cut(s) 370, 676, 730
FauI CCCGC 1 cut(s) 121
FokI GGATG 3 cut(s) 107, 137, 467
FspBI CTAG 2 cut(s) 162, 503
GlaI GCGC 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 321, 393
HapII CCGG 1 cut(s) 122
HhaI GCGC 1 cut(s) 470
Hin1II CATG 3 cut(s) 374, 680, 734
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 3 cut(s) 482, 533, 654
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 266, 655
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 5 cut(s) 143, 429, 487, 538, 687
Hpy188III TCNNGA 4 cut(s) 154, 473, 524, 551
Hpy8I GTNNAC 1 cut(s) 348
HpyCH4III ACNGT 3 cut(s) 175, 214, 589
HpyCH4V TGCA 6 cut(s) 170, 479, 557, 626, 662, 734
HpyF10VI GCNNNNNNNGC 6 cut(s) 327, 467, 476, 518, 527, 731
HpyF3I CTNAG 4 cut(s) 89, 378, 486, 747
Hsp92II CATG 3 cut(s) 374, 680, 734
HspAI GCGC 1 cut(s) 468
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 5 cut(s) 69, 241, 562, 577, 687
LweI GCATC 3 cut(s) 466, 517, 544
MaeI CTAG 2 cut(s) 162, 503
MalI GATC 5 cut(s) 71, 243, 564, 579, 689
MboI GATC 5 cut(s) 69, 241, 562, 577, 687
MboII GAAGA 1 cut(s) 442
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 4 cut(s) 405, 423, 441, 615
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 2 cut(s) 166, 343
MnlI CCTC 3 cut(s) 44, 84, 149
MseI TTAA 2 cut(s) 618, 632
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 248, 332
MvaI CCWGG 2 cut(s) 248, 332
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 327, 467, 476, 518, 527, 731
NdeII GATC 5 cut(s) 69, 241, 562, 577, 687
NlaIII CATG 3 cut(s) 374, 680, 734
NlaIV GGNNCC 2 cut(s) 336, 392
NspI RCATGY 1 cut(s) 734
PceI AGGCCT 1 cut(s) 321
PfeI GAWTC 2 cut(s) 482, 533
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 246, 330
PspGI CCWGG 2 cut(s) 246, 330
PspN4I GGNNCC 2 cut(s) 336, 392
PspPI GGNCC 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 735
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 2 cut(s) 618, 632
Sau3AI GATC 5 cut(s) 69, 241, 562, 577, 687
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 2 cut(s) 248, 332
SduI GDGCHC 1 cut(s) 523
SetI ASST 3 cut(s) 163, 384, 609
SfaNI GCATC 3 cut(s) 466, 517, 544
SfcI CTRYAG 1 cut(s) 585
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 735
Sse9I AATT 4 cut(s) 405, 423, 441, 615
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 4 cut(s) 73, 75, 114, 195
SspI AATATT 2 cut(s) 135, 495
SspMI CTAG 2 cut(s) 162, 503
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 246, 330
TaaI ACNGT 3 cut(s) 175, 214, 589
TaqI TCGA 3 cut(s) 155, 565, 580
TasI AATT 4 cut(s) 405, 423, 441, 615
TfiI GAWTC 2 cut(s) 482, 533
Tru1I TTAA 2 cut(s) 618, 632
Tru9I TTAA 2 cut(s) 618, 632
TscAI CASTG 4 cut(s) 523, 564, 594, 645
TspDTI ATGAA 3 cut(s) 471, 522, 693
TspRI CASTG 4 cut(s) 523, 564, 594, 645
XapI RAATTY 1 cut(s) 441
XceI RCATGY 1 cut(s) 734
XspI CTAG 2 cut(s) 162, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.