Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Reverse (-)

10694029 .. 10695252

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1138700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAATTCTCAAAAGGCTCTCAAACTTTTTGTATCACTAGTCCAATATCTACCCTGCACCAAATGGAGGATATCACAGCTATGCAAATGCAGAAACTTCTTCAACAAGACAGCACAGTAGGAGCAATACTGTATCAAATCGAACCAGTGCCTGTTCCCGTTTCTTGTGCTGATCATGTTCTCAGTGACAATCCATCCCAAAATCTCAATCCGCAACAGCAACAGGACTTGCATTCTTTGTTACAAGAATATGAGTTTCCTTGTAGTATAAAAGATAACATCGCCTATGGGAAGGACGGTGCAACTAACGAAGAAATAAGGGCCGCTGCAGAGCTTGCCAATGCTGCTGAATTCATAGACAATCTGCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGGACTCAGCTTTCTGGGGGCCAAAAGCAAAGAGTTGCTATAGCTAGAGCAATCCTGAAAGACCCAAGAATTCTACTTTTAGATGAAGCCACAAGCGCGCTTGAAGCAGAATCTGAGAGAGTTGTACAGGAGGCATTAGACAGAATTATGATTAACCGCACTACTGTCATTGTAGCCCACCGTTTGAGCACAGTAAGAAACGTCGACTCCATTGCTGTTCTACATAGAGGGACAATCGTTGAAAAAGGTAATGCGTTATTCATATTGTCCTGTTCTACCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

228

Amino Acids

24.86

Weight (kDa)

4.91

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	91 - 165	2.7e-13	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	212, 324, 556
AcsI	RAATTY	2 cut(s)	350, 468
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	104, 503, 641
AhlI	ACTAGT	1 cut(s)	38
AluBI	AGCT	4 cut(s)	80, 334, 409, 443
AluI	AGCT	4 cut(s)	80, 334, 409, 443
Alw21I	GWGCWC	1 cut(s)	590
AlwNI	CAGNNNCTG	2 cut(s)	152, 512
AoxI	GGCC	2 cut(s)	321, 418
ApeKI	GCWGC	2 cut(s)	326, 344
ApoI	RAATTY	2 cut(s)	350, 468
AspLEI	GCGC	2 cut(s)	497, 499
AspS9I	GGNCC	2 cut(s)	321, 418
AsuHPI	GGTGA	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	313, 331
BccI	CCATC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BclI	TGATCA	1 cut(s)	172
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	3 cut(s)	39, 377, 444
BfmI	CTRYAG	2 cut(s)	327, 438
BisI	GCNGC	3 cut(s)	324, 327, 345
BlsI	GCNGC	3 cut(s)	325, 328, 346
BmgT120I	GGNCC	2 cut(s)	321, 418
BmiI	GGNNCC	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	609
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	4 cut(s)	196, 383, 419, 504
BseNI	ACTGG	1 cut(s)	146
BsePI	GCGCGC	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	313, 331
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	323, 420
BsiHKAI	GWGCWC	1 cut(s)	590
BslFI	GGGAC	3 cut(s)	387, 415, 643
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	3 cut(s)	387, 415, 643
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	323, 420
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	212, 324, 556
BspANI	GGCC	2 cut(s)	323, 420
BspCNI	CTCAG	4 cut(s)	195, 382, 418, 505
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	419
BspMAI	CTGCAG	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	146
BssHII	GCGCGC	1 cut(s)	495
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	6 cut(s)	118, 132, 299, 565, 581, 592
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	336, 497
BstDEI	CTNAG	4 cut(s)	182, 369, 405, 513
BstF5I	GGATG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	2 cut(s)	497, 499
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 344, 494, 503
BstSFI	CTRYAG	2 cut(s)	327, 438
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	313, 331
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	323, 420
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	153, 190
Cac8I	GCNNGC	2 cut(s)	336, 497
CaiI	CAGNNNCTG	2 cut(s)	152, 512
CfoI	GCGC	2 cut(s)	497, 499
Cfr13I	GGNCC	2 cut(s)	321, 418
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	2 cut(s)	176, 398
CviJI	RGCY	9 cut(s)	18, 80, 323, 334, 409, 420, 443, 488, 575
CviKI_1	RGCY	9 cut(s)	18, 80, 323, 334, 409, 420, 443, 488, 575
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	4 cut(s)	182, 369, 405, 513
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	369
EcoRI	GAATTC	2 cut(s)	350, 468
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	2 cut(s)	179, 401
FaqI	GGGAC	3 cut(s)	387, 415, 643
FatI	CATG	2 cut(s)	175, 397
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	3 cut(s)	324, 327, 345
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	324, 327, 345
FspBI	CTAG	3 cut(s)	39, 377, 444
GlaI	GCGC	2 cut(s)	496, 498
GluI	GCNGC	3 cut(s)	324, 327, 345
HaeIII	GGCC	2 cut(s)	323, 420
HhaI	GCGC	2 cut(s)	497, 499
Hin1II	CATG	2 cut(s)	179, 401
Hin6I	GCGC	2 cut(s)	495, 497
HinP1I	GCGC	2 cut(s)	495, 497
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	3 cut(s)	403, 509, 605
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	6 cut(s)	118, 132, 299, 565, 581, 592
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	7 cut(s)	4, 58, 85, 91, 232, 302, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 344, 494, 503
HpyF3I	CTNAG	4 cut(s)	182, 369, 405, 513
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	179, 401
HspAI	GCGC	2 cut(s)	495, 497
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	68, 159, 165, 209, 356, 399, 467, 512
Lsp1109I	GCAGC	2 cut(s)	313, 331
MaeI	CTAG	3 cut(s)	39, 377, 444
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	185, 240
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	92, 323
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	4 cut(s)	5, 350, 468, 543
MlyI	GAGTC	2 cut(s)	397, 599
MnlI	CCTC	4 cut(s)	61, 378, 523, 620
MseI	TTAA	2 cut(s)	552, 682
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	232
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	4 cut(s)	335, 344, 494, 503
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	179, 401
NlaIV	GGNNCC	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	185
PauI	GCGCGC	1 cut(s)	495
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	325, 328, 346
PleI	GAGTC	2 cut(s)	397, 599
PpsI	GAGTC	2 cut(s)	397, 599
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	2 cut(s)	321, 418
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	2 cut(s)	152, 512
PteI	GCGCGC	1 cut(s)	495
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	552, 682
SatI	GCNGC	3 cut(s)	324, 327, 345
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	321, 418
SchI	GAGTC	2 cut(s)	397, 599
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	6 cut(s)	82, 336, 411, 445, 603, 649
SfcI	CTRYAG	2 cut(s)	327, 438
SmiMI	CAYNNNNRTG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	4 cut(s)	5, 350, 468, 543
SsiI	CCGC	3 cut(s)	212, 324, 556
SspMI	CTAG	3 cut(s)	39, 377, 444
TaaI	ACNGT	6 cut(s)	118, 132, 299, 565, 581, 592
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	2 cut(s)	141, 603
TasI	AATT	4 cut(s)	5, 350, 468, 543
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	2 cut(s)	552, 682
Tru9I	TTAA	2 cut(s)	552, 682
TscAI	CASTG	2 cut(s)	153, 190
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	326, 344
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	343, 498, 649
TspRI	CASTG	2 cut(s)	153, 190
XapI	RAATTY	2 cut(s)	350, 468
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	3 cut(s)	39, 377, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.