Rmu_sc0001651.1_g000024

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001651.1
Physical Location & Seq
Reverse (-)
110220 .. 110591
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001651.1_g000024.1.cds

Sequence Viewer

Length: 372 bp
atgtttgcaaaacaatgcacgccgggttatgataaaatagttggcgagcgaggggtccaactgtctggtggacagaagcaaagggtggctattgcaagagcgataatgaaggcaccaaagatattacaactagatgaagccactagtgctcttgatgctgaatccgaacaagtggttcaagatgcactagatcgagttatggtggatagaaccacagttgtggttgcacatcgtttatccacgattaagggtgcagattataaatggagtaattgcagagaaaggaaagcatggatctttgatcaatatcaagggtggcacactagcacttatgcttctttggcagcattacatgcaagtgcctcatcttag

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

8.97

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 112
AclWI GGATC 1 cut(s) 302
AgsI TTSAA 1 cut(s) 179
AhlI ACTAGT 1 cut(s) 143
AleI CACNNNNGTG 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 356
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 24
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 4 cut(s) 131, 144, 188, 324
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 56, 114
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 145, 172
BpuMI CCSGG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 190, 294, 301
BspLI GGNNCC 2 cut(s) 56, 114
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 112
BssMI GATC 3 cut(s) 190, 294, 301
Bst4CI ACNGT 2 cut(s) 63, 217
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 20, 47
BstDEI CTNAG 1 cut(s) 369
BstKTI GATC 3 cut(s) 193, 297, 304
BstMBI GATC 3 cut(s) 190, 294, 301
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 341, 353
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 2 cut(s) 65, 220
BstYI RGATCY 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 20, 47
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 2 cut(s) 291, 353
CviJI RGCY 2 cut(s) 89, 140
CviKI_1 RGCY 2 cut(s) 89, 140
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 192, 296, 303
DpnII GATC 3 cut(s) 190, 294, 301
Eco47I GGWCC 1 cut(s) 55
FaeI CATG 2 cut(s) 294, 356
FaiI YATR 6 cut(s) 30, 200, 261, 292, 333, 354
FatI CATG 2 cut(s) 290, 352
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 4 cut(s) 131, 144, 188, 324
GluI GCNGC 1 cut(s) 345
HapII CCGG 1 cut(s) 23
Hin1II CATG 2 cut(s) 294, 356
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 152, 179
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 63, 217
HpyCH4V TGCA 8 cut(s) 8, 18, 95, 185, 227, 254, 276, 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 341, 353
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 2 cut(s) 294, 356
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 190, 294, 301
LpnPI CCDG 2 cut(s) 36, 51
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 2 cut(s) 145, 172
MaeI CTAG 4 cut(s) 131, 144, 188, 324
MalI GATC 3 cut(s) 192, 296, 303
MboI GATC 3 cut(s) 190, 294, 301
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 1 cut(s) 44
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 218, 357
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 341, 353
NciI CCSGG 1 cut(s) 24
NdeII GATC 3 cut(s) 190, 294, 301
NlaIII CATG 2 cut(s) 294, 356
NlaIV GGNNCC 2 cut(s) 56, 114
NspI RCATGY 1 cut(s) 356
OliI CACNNNNGTG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 346
PsiI TTATAA 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 56, 114
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 294
RseI CAYNNNNRTG 2 cut(s) 218, 357
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 190, 294, 301
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 2 cut(s) 145, 172
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 2 cut(s) 218, 357
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 1 cut(s) 271
SspMI CTAG 4 cut(s) 131, 144, 188, 324
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 63, 217
TaqI TCGA 1 cut(s) 193
TasI AATT 1 cut(s) 271
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 122, 150
VpaK11BI GGWCC 1 cut(s) 55
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 4 cut(s) 131, 144, 188, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.