Rorug02G0608000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000116
Physical Location & Seq
Reverse (-)
72488007 .. 72488450
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0608000.1

Sequence Viewer

Length: 444 bp
ATGCATCATTTCAATTTGGCATTATTGGCTAAGCAGGGCTGGAGATTGTTACAACATCCGGACTCTATGATTGCAAAGCTACTCAAAGCTAAGTACTACCCAAGGTGCTCATTTATGGAAGCCGAAATCAAAGGGGGCGAGTCCTATACCTGGCGTAGCATCTTGCTAGGGAAGGATGTGCTAAAGAAGGGTTTGCGTTACCAGGTAGGTAATGGTGCTGATATTGCAATTTGGGATGACCCATGGGTTCCCTTGCCTCAATCGTTTAGACCTTACTCACCGGTTATGGAGGGGTTGGAAACACTGAAAGTGGCAGACCTGATTGATGCTGATACTGGGGACTGGGCTGTGGAGTTTTTGGAGGAGATTTTTACAGTGGGGGAGGTGGAAAAGATAGCGGGTATTCCATTAAGTGTTCGTGGTGTTCGAGATCGTCTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

147

Amino Acids

16.63

Weight (kDa)

5.92

Isoelectric Point (pI)

24.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 1 cut(s) 398
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 150
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 2 cut(s) 149, 201
AluBI AGCT 2 cut(s) 79, 89
AluI AGCT 2 cut(s) 79, 89
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 58
AsiGI ACCGGT 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 151, 203
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 167
BlpI GCTNAGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 95
Bme1390I CCNGG 2 cut(s) 151, 203
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 151, 203
BmrI ACTGGG 2 cut(s) 345, 352
BmsI GCATC 3 cut(s) 13, 168, 316
BmuI ACTGGG 2 cut(s) 345, 352
BplI GAGNNNNNCTC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 61
Bpu1102I GCTNAGC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 101, 242
BsaWI WCCGGW 2 cut(s) 58, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 340, 347
BseAI TCCGGA 1 cut(s) 58
BseBI CCWGG 2 cut(s) 151, 203
BseDI CCNNGG 2 cut(s) 101, 242
BseGI GGATG 3 cut(s) 55, 181, 241
BseLI CCNNNNNNNGG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 340, 347
BseRI GAGGAG 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 59, 281
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 440
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 58
Bsp143I GATC 1 cut(s) 430
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 1 cut(s) 398
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 2 cut(s) 340, 347
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 101, 242
BssMI GATC 1 cut(s) 430
BssT1I CCWWGG 2 cut(s) 101, 242
Bst2UI CCWGG 2 cut(s) 151, 203
Bst4CI ACNGT 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 30, 90
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 55, 181, 241
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 2 cut(s) 26, 224
BstNI CCWGG 2 cut(s) 151, 203
BstSCI CCNGG 2 cut(s) 149, 201
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 3 cut(s) 55, 181, 241
BtsIMutI CAGTG 2 cut(s) 302, 381
Cfr10I RCCGGY 1 cut(s) 280
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 94
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 1 cut(s) 243
CviJI RGCY 6 cut(s) 29, 39, 79, 89, 122, 347
CviKI_1 RGCY 6 cut(s) 29, 39, 79, 89, 122, 347
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 30, 90
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 101, 242
EcoRII CCWGG 2 cut(s) 149, 201
EcoT14I CCWWGG 2 cut(s) 101, 242
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 101, 242
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 1 cut(s) 246
FaiI YATR 5 cut(s) 68, 116, 147, 244, 287
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 242
FauI CCCGC 1 cut(s) 391
FokI GGATG 3 cut(s) 42, 188, 248
FspBI CTAG 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 61
HapII CCGG 2 cut(s) 59, 281
Hin1II CATG 1 cut(s) 246
HinfI GANTC 2 cut(s) 62, 140
HpaII CCGG 2 cut(s) 59, 281
HphI GGTGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 59, 428
HpyAV CCTTC 2 cut(s) 166, 181
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 4, 74, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 224
HpyF3I CTNAG 2 cut(s) 30, 90
Hsp92II CATG 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 430
LweI GCATC 3 cut(s) 13, 168, 316
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 48, 197
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 13, 228
MlyI GAGTC 2 cut(s) 56, 149
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 4 cut(s) 267, 283, 355, 376
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 58
MseI TTAA 1 cut(s) 410
MspI CCGG 2 cut(s) 59, 281
MspR9I CCNGG 2 cut(s) 151, 203
MvaI CCWGG 2 cut(s) 151, 203
MwoI GCNNNNNNNGC 2 cut(s) 26, 224
NcoI CCATGG 1 cut(s) 242
NdeII GATC 1 cut(s) 430
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 1 cut(s) 249
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PinAI ACCGGT 1 cut(s) 280
PleI GAGTC 2 cut(s) 56, 148
PpsI GAGTC 2 cut(s) 56, 148
Psp6I CCWGG 2 cut(s) 149, 201
PspGI CCWGG 2 cut(s) 149, 201
PspN4I GGNNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 410
Sau3AI GATC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 2 cut(s) 56, 149
ScrFI CCNGG 2 cut(s) 151, 203
SduI GDGCHC 1 cut(s) 110
SetI ASST 9 cut(s) 81, 91, 107, 152, 207, 211, 274, 321, 387
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 3 cut(s) 13, 168, 316
Sse9I AATT 2 cut(s) 13, 228
SsiI CCGC 1 cut(s) 398
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 149, 201
StyI CCWWGG 2 cut(s) 101, 242
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 427
TasI AATT 2 cut(s) 13, 228
TatI WGTACW 1 cut(s) 93
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 309, 381
TspRI CASTG 2 cut(s) 309, 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.