Rh4AG277000

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
59350750 .. 59359465
8716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG277000.1

Sequence Viewer

Length: 3903 bp
ATGGCTGAGGAGAATCCTTCAGATGGAGATGCAATAACCGAGCAAGAAACTCCAACAAATAGCCATCCAACAGTGATGGTGGGTTCCAACGAAAACAGACTAGATACAAGCAAGAGCAAGGAGGATGGAACTAAAACAGTTCCACTCTACAAACTTTTCTCTTTTGCTGATTCCATGGATTACCTGCTAATGTCTGTTGGTACAATCAGCGCTATTGGTAATGGACTCTGTATGCCTCTAATGGCCATAGTCTTTGGAGATCTACTTACTTCTTTTTTAGAAACTGGGAATAACAAGAGAGTGGCTGATGCAGTTTCCAAGGTGGCTCTAAAGTATGTTTACTTGGCTCTTGGGGGTGCTGCTGCAGCATTTCTACGTAAGTACATTGGGTCAGTTTTTTTAATAAATTGTTTGGCCTGGTGCAAAAGTGAAATACTTGATTTCTGTGTGCTAGAGATGTCATGCTGGATGGTCACTGGAGAGAGACAGGCTGCACGATTACGAAGTTTATACTTGAAGACCATACTGAGGCAAGATGTCAGCTATTTTGATCAAGAAATCAACTCTGGAGAAATTGTTGGGAGGATGTCAGGTGATACTCTGCTCATTAAAGAGGCAATGGGTGAGAAGGTAGGAACTTTTATCCAAGTAGTTGCAACATTCACAGGCAGCTATATTATAGCATTTTTTAAGGGATGGCTTCTCACCCTTGTCATGATATCCTCTATTCCCCCTCTTGTCTTCTCTGGTGCTGTCATGAACCATTTCATAGTGAAATTGGCATCCAATGGACAAGCTGCATATTCAGGAGGAGCAACTGTGGTAGAGGAGACAATTGGTTCTATCAGAACTGTTGCATCGTTCACAGGGGAGAAGCAAGCTATATCTAACTACAATAATTCCTTGAATAAAGCTTACAAGTCCGGTGTGCAAGAGGGTTGGACATCTGGTTTGGGTTCTGGTGCACTTAGGCTTATTGTATTCTGTACTTATGCTTTGGCTGTGTGGTTTGGTGGAATAATGATACTTGAAAAAGGATACAAGGGAGGAGATGTCATGACAGTAATTTTTTCTGTGTTGATGGGCTCTCTGTCTCTTGGGAAAGCATCTCCTTGCATCAGTGCATTTGCTCCTGGACAAGCTGCAGCTTATAAGATGTTTGAGACAATTAACAGAAAGCCCGAGATAGATGCATATGATACTACTGGGAGGGTATTACAAGATATTCGTGGAGACATAGAACTGAGGGATGTTTGTTTTAGTTATCCCACAAGACTGGATGAGCAAATATTCCATGGATTTTGTGTCTCAATACCTAGTGGTGCAACTGCTGCTTTGGTTGGAGAAAGCGGAAGTGGTAAATCTACTGTACTCGGTTTGATTGAGAGATTTTATGACCCCCAGGCTGGTGAAGTTCTTATTGACGGTGTTAATATCAAAGAGTTCCAACTGAAATGGATCAGACAGAAAATAGGCCTTGTAAGCCAGGAACCAGTTTTGTTTACTGGTAGCATTAAAGATAATATTGCGTTTGGAAAGGATGGTGCTACTACTGAAGAGATAGCAACTGCTGCTGAGCTTGCCAATGCTACAAAATTCATAGCTTTACTGCCTCAGGGAATAGATACCTTGGTTGGTGAGCATGGAACTCAGCTATCTGGAGGGCAAAAGCAAAGAGTTGCTATAGCCAGAGCAATTCTTAAGAACCCGAGAATTCTACTTTTAGATGAAGCGACAAGCGCACTTGACACAAAATCCGAGAGAATTGTGCAGGAGGCGCTGGACAGAGTAATGATTAACCGGACTACTGTCATAGTAGCCCACCGCTTGAGCACAGTAAGGAATGCTGACACCATTGCTGTAATACATCAGGGAATAATTGCTGAGAAAGGACCACATTCTGAGCTAATCAGGAATCCCGATGGAGCATATAGCAGGCTTATAAGGTTGCAAGAAACTAGTTCTCTGTCAGAAGACTCGGAACATACTTGTCTAAATTCTAAGAAATCATCTCCAAGAAGAAGTAGTAGTCATCACTCATTCTCAATCTCATATGGTATTCCTAATGCAAGCAGTATCCTTGAAACAACAGCTATAGAACCTGACGTTCCTGCTTCAGTACCAACAAAAGGGCCTCCAGGAGTCTCTCTTCGCCGCGTTGCTTACCTGAACAAGCCAGAGATACCAGTCCTACTTCTAGGTACTATAGTTGCAGCTGTCAATGGGGTTATTACAGTAATCTTCCCTATTTATGGTAGTTTGTTGTCAAGTGTAATCAAGACCTTCTTTGAGCCACCCCATGAACTTCGTAAGCATTCAAAGTTTTTGGCATCAATCTTTGTTATTCTTGGAGTGGTATCTTTCTTGGCACAATCGTCAAGAGCACACCTCTTTGCCGTGGCGAGCTGCAGGTTAATAAGAAGAGTCCGCGCAATGTGCTTTGAGAAGGTGGTTTACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCACTCAAGTGGTGCCATTGGGGCAAGGCTTTCTATAGATGCAGCGTCTTTGAGAGGGCTTGTTGGAGATGCTCTTGGTTTGGTGGTTGAGAATACGGCAGCAGCAATTATGGGGGTGATTATTGCTTTTGGTGCAAATTGGCAACTTTCTCTTGTAATCCTTGTTCTGTTACCTTTATTGGGAATAAACGGATATCTTCAAGACCAGTACATGAAAGGATTCAGTGCAGATGCAAAGAAATTGTACGAGGACGCAAGCCAAGTAGCTAGTGATGCTGTGGGGAGTATTCGGACAGTTGCTTCCTTTTGTGCTGAAGAGAAGATGATTGAGTTGTACAAGAAAAAATGTGAAAGCCCTATTAAGACAGGGATAAGACAAGGTTTAGTTTCTGGAATAGGTTTTGGGGTATCACTCTTTTTACTGTTTTCAGCGTTTGCCTTGATATTTTACACTGGTGGTCTACTTGTTGCAGCAGGCAAGACAACAGCCTCTGCTGTTTTCCGGGCTGTCTTTGCTCTCACTATTGCTTCTTTTGGACTTGCTCAGTCGAGCTCCCTAGCAACTGATGTTAGTAAAGGAAAGAGCTCTGCTGCTTCCATATTCGAAATTCTTGACATGAAATCAAAAATAGACTCTAGTGATAACTCGGGCATGACAATAGAAAATGTGAAGGGAGAAATTGAATTTCACCACGTCAATTTCAGGTATCCTAGTAGACCTAACGTGCCAATTATCAACGATCTTTGCTTGACCATTAGTCGTGGCGAGACAATTGCTCTGGTTGGTGAAAGTGGAAGTGGAAAATCGACAGTGATCTCTTTGATCCAGAGATTTTACGATCCTGATTCAGGTCACATTACATTGGATGGAATCGTAATTCAGAAACTAGAGTTGAGGTGGTTGAGACAGCAAATGGGGCTGGTGAGCCAGGAGCCTCTGCTGTTTAATGACACTATCCGAGCCAACATTGCATATGGAAAGGAAGGACAGACAACCGAGGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCAGACGAGTTCATTAGTAGTTTACAACATGGGTATGATACAATAGTAGGAGAGCGAGGGGTCCAATTGTCCGGTGGACAGAAGCAAAGAGTTGCTATTGCACGAGCTATTATGAAGGCACCAAAGATATTACTACTTGATGAAGCCACCAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTGGACCGAGTTATTGTGGATCGAACCACAGTGGTTGTTGCCCATCGGTTATCCACAATAAAAGGTGCAGATTTAATTGCTGTGGTAAAAAATGGAGTCGTTGCAGAGAAAGGAAAGCATGAAACTTTGATCAATATCCGCAATGGCATTTATGCATCTTTGGTAGCGTTGCATGCAAGTGCCTCAACTTAA

Protein Analysis

1300

Amino Acids

139.94

Weight (kDa)

6.45

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 149 - 364 1.8e-50 ABC transporter transmembrane region
ABC_tran PF00005 436 - 580 2.2e-32 ABC transporter
ABC_membrane PF00664 731 - 1005 6e-49 ABC transporter transmembrane region
ABC_tran PF00005 1075 - 1224 1.7e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1152, 1943
Acc36I ACCTGC 2 cut(s) 192, 2400
AccB1I GGYRCC 2 cut(s) 2498, 3637
AccI GTMKAC 2 cut(s) 2947, 3202
AccII CGCG 2 cut(s) 2157, 2430
AciI CCGC 5 cut(s) 1350, 1825, 2155, 2428, 3850
AclWI GGATC 4 cut(s) 1466, 3304, 3320, 3738
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 5 cut(s) 1595, 1713, 1996, 3093, 3170
AcuI CTGAAG 3 cut(s) 1575, 2100, 2820
AfaI GTAC 9 cut(s) 202, 383, 988, 1371, 2121, 2203, 2696, 2732, 2822
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 7 cut(s) 23, 528, 1406, 2129, 2252, 2666, 3335
AflII CTTAAG 1 cut(s) 1700
AgsI TTSAA 8 cut(s) 517, 907, 1031, 2084, 2319, 2687, 3170, 3704
AhdI GACNNNNNGTC 1 cut(s) 3243
AhlI ACTAGT 1 cut(s) 1958
AjiI CACGTC 1 cut(s) 3181
AjnI CCWGG 6 cut(s) 416, 1132, 1401, 1485, 2137, 3414
AleI CACNNNNGTG 1 cut(s) 2493
Alw21I GWGCWC 7 cut(s) 967, 1835, 2386, 2490, 3041, 3074, 3676
Alw26I GTCTC 9 cut(s) 478, 824, 1098, 1157, 1227, 1312, 2149, 3248, 3385
Alw44I GTGCAC 1 cut(s) 963
AlwI GGATC 4 cut(s) 1466, 3304, 3320, 3738
AlwNI CAGNNNCTG 1 cut(s) 2978
Ama87I CYCGRG 3 cut(s) 1181, 1708, 3133
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 4 cut(s) 243, 414, 1474, 2132
ApaLI GTGCAC 1 cut(s) 963
ApoI RAATTY 5 cut(s) 1595, 1713, 1996, 3093, 3170
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
Asp700I GAANNNNTTC 2 cut(s) 764, 2705
AspLEI GCGC 4 cut(s) 212, 1742, 1780, 2432
AspS9I GGNCC 4 cut(s) 1892, 2132, 3580, 3715
AsuC2I CCSGG 1 cut(s) 2990
AsuHPI GGTGA 9 cut(s) 605, 635, 697, 1421, 1649, 2614, 3167, 3284, 3421
AsuII TTCGAA 1 cut(s) 3090
AvaI CYCGRG 3 cut(s) 1181, 1708, 3133
AvaII GGWCC 3 cut(s) 1892, 3580, 3715
AxyI CCTNAGG 1 cut(s) 1614
BaeGI GKGCMC 1 cut(s) 967
BaeI ACNNNNGTAYC 6 cut(s) 1617, 1650, 2193, 2226, 3549, 3582
BalI TGGCCA 1 cut(s) 245
BanI GGYRCC 2 cut(s) 2498, 3637
BanII GRGCYC 3 cut(s) 1088, 3041, 3074
BarI GAAGNNNNNNTAC 2 cut(s) 2438, 2470
BauI CACGAG 1 cut(s) 3621
BbsI GAAGAC 3 cut(s) 524, 733, 1980
Bbv12I GWGCWC 7 cut(s) 967, 1835, 2386, 2490, 3041, 3074, 3676
BbvCI CCTCAGC 1 cut(s) 6
BceAI ACGGC 2 cut(s) 2381, 2598
BcgI CGANNNNNNTGC 4 cut(s) 1172, 1206, 3242, 3276
BciT130I CCWGG 6 cut(s) 418, 1134, 1403, 1487, 2139, 3416
BciVI GTATCC 3 cut(s) 1031, 2087, 3204
BclI TGATCA 2 cut(s) 550, 3840
BcnI CCSGG 1 cut(s) 2990
BcoDI GTCTC 9 cut(s) 478, 824, 1098, 1157, 1227, 1312, 2149, 3248, 3385
BcuI ACTAGT 1 cut(s) 1958
BfmI CTRYAG 8 cut(s) 363, 1143, 1683, 2094, 2205, 2407, 2520, 3501
BfoI RGCGCY 2 cut(s) 213, 1781
BfrI CTTAAG 1 cut(s) 1700
BfuAI ACCTGC 2 cut(s) 192, 2400
BfuI GTATCC 3 cut(s) 1031, 2087, 3204
BglI GCCNNNNNGGC 1 cut(s) 2507
BglII AGATCT 1 cut(s) 259
BlpI GCTNAGC 2 cut(s) 1575, 2484
Bme1390I CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2139, 2990, 3416
Bme18I GGWCC 3 cut(s) 1892, 3580, 3715
BmeRI GACNNNNNGTC 1 cut(s) 3243
BmeT110I CYCGRG 3 cut(s) 1181, 1708, 3133
BmgBI CACGTC 1 cut(s) 3181
BmgT120I GGNCC 4 cut(s) 1892, 2132, 3580, 3715
BmiI GGNNCC 6 cut(s) 85, 1491, 2500, 3420, 3581, 3639
BmrFI CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2139, 2990, 3416
BmrI ACTGGG 2 cut(s) 294, 1215
BmuI ACTGGG 2 cut(s) 294, 1215
BoxI GACNNNNGTC 1 cut(s) 1808
BpiI GAAGAC 3 cut(s) 524, 733, 1980
BplI GAGNNNNNCTC 2 cut(s) 2373, 2405
BpmI CTGGAG 4 cut(s) 498, 588, 1680, 2121
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 2 cut(s) 1575, 2484
Bpu14I TTCGAA 1 cut(s) 3090
BpuEI CTTGAG 2 cut(s) 1849, 2476
BpuMI CCSGG 1 cut(s) 2990
BsaAI YACGTR 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 3845
BsaJI CCNNGG 7 cut(s) 174, 318, 1294, 1401, 1629, 2397, 3483
BsaWI WCCGGW 3 cut(s) 923, 1800, 3590
BsaXI ACNNNNNCTCC 6 cut(s) 561, 591, 804, 834, 1038, 1068
Bsc4I CCNNNNNNNGG 7 cut(s) 23, 528, 1406, 2129, 2252, 2666, 3335
Bse21I CCTNAGG 1 cut(s) 1614
Bse3DI GCAATG 5 cut(s) 624, 1854, 2439, 3453, 3859
Bse8I GATNNNNATC 1 cut(s) 3845
BseBI CCWGG 6 cut(s) 418, 1134, 1403, 1487, 2139, 3416
BseDI CCNNGG 7 cut(s) 174, 318, 1294, 1401, 1629, 2397, 3483
BseJI GATNNNNATC 1 cut(s) 3845
BseLI CCNNNNNNNGG 7 cut(s) 23, 528, 1406, 2129, 2252, 2666, 3335
BseMI GCAATG 5 cut(s) 624, 1854, 2439, 3453, 3859
BseMII CTCAG 9 cut(s) 518, 1235, 1566, 1628, 1664, 1875, 1893, 2475, 3044
BseRI GAGGAG 4 cut(s) 23, 825, 842, 1062
BseSI GKGCMC 1 cut(s) 967
BsgI GTGCAG 4 cut(s) 477, 1790, 2733, 3798
Bsh1236I CGCG 2 cut(s) 2157, 2430
BshFI GGCC 4 cut(s) 245, 416, 1476, 2134
BshNI GGYRCC 2 cut(s) 2498, 3637
BsiHKAI GWGCWC 7 cut(s) 967, 1835, 2386, 2490, 3041, 3074, 3676
BsiHKCI CYCGRG 3 cut(s) 1181, 1708, 3133
BsiSI CCGG 4 cut(s) 924, 1801, 2989, 3591
BslI CCNNNNNNNGG 7 cut(s) 23, 528, 1406, 2129, 2252, 2666, 3335
BsmAI GTCTC 9 cut(s) 478, 824, 1098, 1157, 1227, 1312, 2149, 3248, 3385
BsmI GAATGC 2 cut(s) 1849, 2314
BsnI GGCC 4 cut(s) 245, 416, 1476, 2134
BsoBI CYCGRG 3 cut(s) 1181, 1708, 3133
Bsp119I TTCGAA 1 cut(s) 3090
Bsp1286I GDGCHC 8 cut(s) 967, 1088, 1835, 2386, 2490, 3041, 3074, 3676
Bsp1407I TGTACA 1 cut(s) 2820
Bsp143I GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
Bsp1720I GCTNAGC 2 cut(s) 1575, 2484
Bsp19I CCATGG 2 cut(s) 174, 1294
BspACI CCGC 5 cut(s) 1350, 1825, 2155, 2428, 3850
BspANI GGCC 4 cut(s) 245, 416, 1476, 2134
BspCNI CTCAG 9 cut(s) 519, 1236, 1567, 1627, 1663, 1876, 1894, 2476, 3043
BspFNI CGCG 2 cut(s) 2157, 2430
BspHI TCATGA 3 cut(s) 714, 756, 1056
BspLI GGNNCC 6 cut(s) 85, 1491, 2500, 3420, 3581, 3639
BspMAI CTGCAG 4 cut(s) 367, 1147, 2411, 3505
BspMI ACCTGC 2 cut(s) 192, 2400
BspPI GGATC 4 cut(s) 1466, 3304, 3320, 3738
BspT104I TTCGAA 1 cut(s) 3090
BspT107I GGYRCC 2 cut(s) 2498, 3637
BspTI CTTAAG 1 cut(s) 1700
BsrDI GCAATG 5 cut(s) 624, 1854, 2439, 3453, 3859
BsrGI TGTACA 1 cut(s) 2820
BssECI CCNNGG 7 cut(s) 174, 318, 1294, 1401, 1629, 2397, 3483
BssMI GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
BssSI CACGAG 1 cut(s) 3621
BssT1I CCWWGG 4 cut(s) 174, 318, 1294, 1629
Bst2BI CACGAG 1 cut(s) 3621
Bst2UI CCWGG 6 cut(s) 418, 1134, 1403, 1487, 2139, 3416
Bst6I CTCTTC 4 cut(s) 1551, 2154, 2416, 2796
BstAFI CTTAAG 1 cut(s) 1700
BstAPI GCANNNNNTGC 2 cut(s) 1331, 1571
BstAUI TGTACA 1 cut(s) 2820
BstBAI YACGTR 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 3090
BstC8I GCNNGC 8 cut(s) 879, 1581, 1937, 2071, 2404, 2743, 2962, 3885
BstDSI CCRYGG 3 cut(s) 174, 1294, 2397
BstENI CCTNNNNNAGG 1 cut(s) 3333
BstFNI CGCG 2 cut(s) 2157, 2430
BstH2I RGCGCY 2 cut(s) 213, 1781
BstHHI GCGC 4 cut(s) 212, 1742, 1780, 2432
BstKTI GATC 9 cut(s) 262, 553, 1461, 3229, 3303, 3312, 3328, 3733, 3843
BstMAI GTCTC 9 cut(s) 478, 824, 1098, 1157, 1227, 1312, 2149, 3248, 3385
BstMBI GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
BstNI CCWGG 6 cut(s) 418, 1134, 1403, 1487, 2139, 3416
BstNSI RCATGY 1 cut(s) 3887
BstPAI GACNNNNGTC 1 cut(s) 1808
BstSCI CCNGG 7 cut(s) 416, 1132, 1401, 1485, 2137, 2988, 3414
BstSFI CTRYAG 8 cut(s) 363, 1143, 1683, 2094, 2205, 2407, 2520, 3501
BstSLI GKGCMC 1 cut(s) 967
BstSNI TACGTA 1 cut(s) 377
BstUI CGCG 2 cut(s) 2157, 2430
BstV2I GAAGAC 3 cut(s) 524, 733, 1980
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 1276
BstYI RGATCY 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 1614
BsuI GTATCC 3 cut(s) 1031, 2087, 3204
BsuRI GGCC 4 cut(s) 245, 416, 1476, 2134
BtgI CCRYGG 3 cut(s) 174, 1294, 2397
BtrI CACGTC 1 cut(s) 3181
BtsIMutI CAGTG 9 cut(s) 78, 474, 1126, 2716, 2937, 3303, 3676, 3710, 3747
BveI ACCTGC 2 cut(s) 192, 2400
Cac8I GCNNGC 8 cut(s) 879, 1581, 1937, 2071, 2404, 2743, 2962, 3885
CaiI CAGNNNCTG 1 cut(s) 2978
CciI TCATGA 3 cut(s) 714, 756, 1056
CfoI GCGC 4 cut(s) 212, 1742, 1780, 2432
Cfr13I GGNCC 4 cut(s) 1892, 2132, 3580, 3715
CseI GACGC 2 cut(s) 2520, 2747
Csp6I GTAC 9 cut(s) 201, 382, 987, 1370, 2120, 2202, 2695, 2731, 2821
CspCI CAANNNNNGTGG 2 cut(s) 3727, 3762
CviQI GTAC 9 cut(s) 201, 382, 987, 1370, 2120, 2202, 2695, 2731, 2821
DpnI GATC 9 cut(s) 261, 552, 1460, 3228, 3302, 3311, 3327, 3732, 3842
DpnII GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
DriI GACNNNNNGTC 1 cut(s) 3243
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 4 cut(s) 1551, 2154, 2416, 2796
Eam1105I GACNNNNNGTC 1 cut(s) 3243
EarI CTCTTC 4 cut(s) 1551, 2154, 2416, 2796
Ecl136II GAGCTC 2 cut(s) 3039, 3072
Eco105I TACGTA 1 cut(s) 377
Eco130I CCWWGG 4 cut(s) 174, 318, 1294, 1629
Eco147I AGGCCT 1 cut(s) 1476
Eco24I GRGCYC 3 cut(s) 1088, 3041, 3074
Eco32I GATATC 2 cut(s) 720, 2681
Eco47I GGWCC 3 cut(s) 1892, 3580, 3715
Eco47III AGCGCT 1 cut(s) 211
Eco53kI GAGCTC 2 cut(s) 3039, 3072
Eco57I CTGAAG 3 cut(s) 1575, 2100, 2820
Eco81I CCTNAGG 1 cut(s) 1614
Eco88I CYCGRG 3 cut(s) 1181, 1708, 3133
EcoICRI GAGCTC 2 cut(s) 3039, 3072
EcoNI CCTNNNNNAGG 1 cut(s) 3333
EcoO109I RGGNCCY 1 cut(s) 2132
EcoRI GAATTC 1 cut(s) 1713
EcoRII CCWGG 6 cut(s) 416, 1132, 1401, 1485, 2137, 3414
EcoRV GATATC 2 cut(s) 720, 2681
EcoT14I CCWWGG 4 cut(s) 174, 318, 1294, 1629
EcoT22I ATGCAT 2 cut(s) 1195, 3868
EcoT38I GRGCYC 3 cut(s) 1088, 3041, 3074
ErhI CCWWGG 4 cut(s) 174, 318, 1294, 1629
FalI AAGNNNNNCTT 2 cut(s) 2270, 2302
FauNDI CATATG 3 cut(s) 1195, 2053, 3460
FbaI TGATCA 2 cut(s) 550, 3840
FblI GTMKAC 2 cut(s) 2947, 3202
FriOI GRGCYC 3 cut(s) 1088, 3041, 3074
GlaI GCGC 4 cut(s) 211, 1741, 1779, 2431
GsuI CTGGAG 4 cut(s) 498, 588, 1680, 2121
HaeII RGCGCY 2 cut(s) 213, 1781
HaeIII GGCC 4 cut(s) 245, 416, 1476, 2134
HapII CCGG 4 cut(s) 924, 1801, 2989, 3591
HgaI GACGC 2 cut(s) 2520, 2747
HhaI GCGC 4 cut(s) 212, 1742, 1780, 2432
Hin6I GCGC 4 cut(s) 210, 1740, 1778, 2430
HinP1I GCGC 4 cut(s) 210, 1740, 1778, 2430
HindIII AAGCTT 1 cut(s) 912
HpaII CCGG 4 cut(s) 924, 1801, 2989, 3591
HphI GGTGA 9 cut(s) 605, 635, 697, 1421, 1649, 2614, 3167, 3284, 3421
Hpy166II GTNNAC 9 cut(s) 340, 864, 965, 1503, 2455, 2948, 3203, 3542, 3596
Hpy8I GTNNAC 9 cut(s) 340, 864, 965, 1503, 2455, 2948, 3203, 3542, 3596
HpyAV CCTTC 7 cut(s) 27, 622, 2293, 2440, 3151, 3464, 3628
HpyCH4IV ACGT 4 cut(s) 376, 2106, 3180, 3210
HpySE526I ACGT 4 cut(s) 376, 2106, 3180, 3210
HspAI GCGC 4 cut(s) 210, 1740, 1778, 2430
Ksp22I TGATCA 2 cut(s) 550, 3840
Kzo9I GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
LmnI GCTCC 5 cut(s) 812, 1135, 1925, 3044, 3418
MaeII ACGT 4 cut(s) 376, 2106, 3180, 3210
MaeIII GTNAC 3 cut(s) 472, 2655, 3338
MalI GATC 9 cut(s) 261, 552, 1460, 3228, 3302, 3311, 3327, 3732, 3842
MboI GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
MfeI CAATTG 3 cut(s) 834, 3258, 3584
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 8 cut(s) 967, 1088, 1835, 2386, 2490, 3041, 3074, 3676
MlsI TGGCCA 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 6 cut(s) 219, 1970, 2151, 2433, 3113, 3816
MmeI TCCRAC 7 cut(s) 77, 92, 111, 920, 1321, 1471, 2530
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 2 cut(s) 1195, 3868
MroXI GAANNNNTTC 2 cut(s) 764, 2705
MscI TGGCCA 1 cut(s) 245
MslI CAYNNNNRTG 3 cut(s) 2493, 3552, 3888
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 2216
MspCI CTTAAG 1 cut(s) 1700
MspI CCGG 4 cut(s) 924, 1801, 2989, 3591
MspR9I CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2139, 2990, 3416
MunI CAATTG 3 cut(s) 834, 3258, 3584
Mva1269I GAATGC 2 cut(s) 1849, 2314
MvaI CCWGG 6 cut(s) 418, 1134, 1403, 1487, 2139, 3416
MvnI CGCG 2 cut(s) 2157, 2430
NciI CCSGG 1 cut(s) 2990
NcoI CCATGG 2 cut(s) 174, 1294
NdeI CATATG 3 cut(s) 1195, 2053, 3460
NdeII GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
NlaIV GGNNCC 6 cut(s) 85, 1491, 2500, 3420, 3581, 3639
NmuCI GTSAC 2 cut(s) 472, 3338
NsiI ATGCAT 2 cut(s) 1195, 3868
NspI RCATGY 1 cut(s) 3887
NspV TTCGAA 1 cut(s) 3090
OliI CACNNNNGTG 1 cut(s) 2493
PaeI GCATGC 1 cut(s) 3887
PagI TCATGA 3 cut(s) 714, 756, 1056
PceI AGGCCT 1 cut(s) 1476
PctI GAATGC 2 cut(s) 1849, 2314
PdmI GAANNNNTTC 2 cut(s) 764, 2705
PfeI GAWTC 7 cut(s) 13, 170, 1915, 2706, 3332, 3357, 3686
PfoI TCCNGGA 2 cut(s) 1132, 2137
PleI GAGTC 6 cut(s) 219, 1970, 2150, 2432, 3113, 3815
PpsI GAGTC 6 cut(s) 219, 1970, 2150, 2432, 3113, 3815
Ppu21I YACGTR 1 cut(s) 377
PshAI GACNNNNGTC 1 cut(s) 1808
PsiI TTATAA 2 cut(s) 1152, 1943
Psp124BI GAGCTC 2 cut(s) 3041, 3074
Psp6I CCWGG 6 cut(s) 416, 1132, 1401, 1485, 2137, 3414
PspGI CCWGG 6 cut(s) 416, 1132, 1401, 1485, 2137, 3414
PspN4I GGNNCC 6 cut(s) 85, 1491, 2500, 3420, 3581, 3639
PspPI GGNCC 4 cut(s) 1892, 2132, 3580, 3715
PsrI GAACNNNNNNTAC 2 cut(s) 2634, 2666
PstI CTGCAG 4 cut(s) 367, 1147, 2411, 3505
PstNI CAGNNNCTG 1 cut(s) 2978
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 2216
RsaI GTAC 9 cut(s) 202, 383, 988, 1371, 2121, 2203, 2696, 2732, 2822
RsaNI GTAC 9 cut(s) 201, 382, 987, 1370, 2120, 2202, 2695, 2731, 2821
RseI CAYNNNNRTG 3 cut(s) 2493, 3552, 3888
SacI GAGCTC 2 cut(s) 3041, 3074
Sau3AI GATC 9 cut(s) 259, 550, 1458, 3226, 3300, 3309, 3325, 3730, 3840
Sau96I GGNCC 4 cut(s) 1892, 2132, 3580, 3715
SchI GAGTC 6 cut(s) 219, 1970, 2151, 2433, 3113, 3816
ScrFI CCNGG 7 cut(s) 418, 1134, 1403, 1487, 2139, 2990, 3416
SduI GDGCHC 8 cut(s) 967, 1088, 1835, 2386, 2490, 3041, 3074, 3676
SfcI CTRYAG 8 cut(s) 363, 1143, 1683, 2094, 2205, 2407, 2520, 3501
SfuI TTCGAA 1 cut(s) 3090
SinI GGWCC 3 cut(s) 1892, 3580, 3715
SmiMI CAYNNNNRTG 3 cut(s) 2493, 3552, 3888
SmlI CTYRAG 3 cut(s) 1700, 1828, 2491
SmoI CTYRAG 3 cut(s) 1700, 1828, 2491
SnaBI TACGTA 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 1958
SphI GCATGC 1 cut(s) 3887
SseBI AGGCCT 1 cut(s) 1476
SsiI CCGC 5 cut(s) 1350, 1825, 2155, 2428, 3850
SspI AATATT 2 cut(s) 1290, 1525
SstI GAGCTC 2 cut(s) 3041, 3074
StuI AGGCCT 1 cut(s) 1476
StyD4I CCNGG 7 cut(s) 416, 1132, 1401, 1485, 2137, 2988, 3414
StyI CCWWGG 4 cut(s) 174, 318, 1294, 1629
TaiI ACGT 4 cut(s) 379, 2109, 3183, 3213
TaqI TCGA 4 cut(s) 3035, 3090, 3293, 3733
TaqII GACCGA 1 cut(s) 3732
TatI WGTACW 5 cut(s) 381, 986, 1369, 2694, 2820
TauI GCSGC 1 cut(s) 2157
TfiI GAWTC 7 cut(s) 13, 170, 1915, 2706, 3332, 3357, 3686
TscAI CASTG 9 cut(s) 78, 481, 1126, 2716, 2944, 3303, 3676, 3717, 3747
TseFI GTSAC 2 cut(s) 472, 3338
Tsp45I GTSAC 2 cut(s) 472, 3338
TspGWI ACGGA 1 cut(s) 2691
TspRI CASTG 9 cut(s) 78, 481, 1126, 2716, 2944, 3303, 3676, 3717, 3747
Vha464I CTTAAG 1 cut(s) 1700
VneI GTGCAC 1 cut(s) 963
VpaK11BI GGWCC 3 cut(s) 1892, 3580, 3715
XagI CCTNNNNNAGG 1 cut(s) 3333
XapI RAATTY 5 cut(s) 1595, 1713, 1996, 3093, 3170
XceI RCATGY 1 cut(s) 3887
XcmI CCANNNNNNNNNTGG 1 cut(s) 3590
XmiI GTMKAC 2 cut(s) 2947, 3202
XmnI GAANNNNTTC 2 cut(s) 764, 2705
Zsp2I ATGCAT 2 cut(s) 1195, 3868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.