Rorug03G0222800

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
20283994 .. 20284972
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222800.1

Sequence Viewer

Length: 669 bp
ATGAGGCTTCTTCCCACCTTGACAGTCGGTGGCACACAGCCCCGCCCACCAGGGGCGCTTTTGCCCGGAGTTTCTCTCCGATCTGTGGCCATGTGCCTCTCTTTGCCTTCCTCTGTTTTTTCCTTTCAGTTGGGTCTCCCTTGTTGTTTCTTTCCTTATGGATTTCTTGGTTTGTTTCTCATGTTCCTGACCAAATATTTTCCAGATCTACTTTGTTTCCCCTCAAACCCGTCCCTTTACATGTGCATCGCTATCTCCGGTGATGCTTATCCTAAGCCTACTGCCATGACCTGTAAATATGCTCCTCGGAGCTCATCTCAAAACGGGAGTTGCCCGTTAGTGCACCCGGTGATGCTACAAGGAACTGAGTACCCTTTGGGTGCCTGTCCCTTAGATCCTTTTCTGGATCTCACCTCTCTCTCTTTTCAACTAGGCTATCTGGTTGATTTCTTGGCAGATGAAGATCTTCTTGTTGGAGATGGTTTGAGTTATGTGCTTTTGACTTTTGTATCTGGAAATTTGGCGGATGGGTACTTCAGAACCGCCATCGATCCCCTCAACAATCTCTCGTTCCAGTTGGATGTTGCTGCTGGTGGCTGTGCTCTACCGTGCGGCGGCGCTGCTGGTTCTTCTTCGTTGTCGGCAACTGTGTTGGCTTGCCTGGTTTAG

Protein Analysis

222

Amino Acids

23.41

Weight (kDa)

4.48

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 5 cut(s) 43, 524, 543, 612, 615
AclWI GGATC 3 cut(s) 389, 414, 545
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 1 cut(s) 520
AdeI CACNNNGTG 1 cut(s) 349
AfaI GTAC 2 cut(s) 371, 533
AfiI CCNNNNNNNGG 3 cut(s) 52, 85, 614
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 428
AjnI CCWGG 2 cut(s) 49, 660
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw21I GWGCWC 3 cut(s) 314, 345, 604
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 3 cut(s) 389, 414, 545
AoxI GGCC 1 cut(s) 87
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 587, 620
ApoI RAATTY 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 2 cut(s) 58, 620
AsuC2I CCSGG 2 cut(s) 66, 347
AsuHPI GGTGA 3 cut(s) 272, 361, 403
BaeGI GKGCMC 1 cut(s) 345
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 3 cut(s) 314, 345, 604
BbvI GCAGC 2 cut(s) 574, 607
BccI CCATC 3 cut(s) 473, 521, 554
BciT130I CCWGG 2 cut(s) 51, 662
BcnI CCSGG 2 cut(s) 66, 347
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 431
BfoI RGCGCY 2 cut(s) 59, 621
BglII AGATCT 2 cut(s) 205, 463
BisI GCNGC 4 cut(s) 588, 613, 616, 621
BlsI GCNGC 4 cut(s) 589, 614, 617, 622
Bme1390I CCNGG 4 cut(s) 51, 66, 347, 662
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 4 cut(s) 51, 66, 347, 662
BmsI GCATC 3 cut(s) 253, 255, 342
BplI GAGNNNNNCTC 4 cut(s) 60, 92, 301, 333
Bpu10I CCTNAGC 1 cut(s) 273
BpuMI CCSGG 2 cut(s) 66, 347
Bsa29I ATCGAT 1 cut(s) 549
BsaBI GATNNNNATC 2 cut(s) 267, 462
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 50, 305
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 85, 614
Bse1I ACTGG 1 cut(s) 574
Bse8I GATNNNNATC 2 cut(s) 267, 462
BseBI CCWGG 2 cut(s) 51, 662
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 50, 305
BseGI GGATG 2 cut(s) 532, 586
BseJI GATNNNNATC 2 cut(s) 267, 462
BseLI CCNNNNNNNGG 3 cut(s) 52, 85, 614
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 2 cut(s) 574, 607
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 549
BsiHKAI GWGCWC 3 cut(s) 314, 345, 604
BsiSI CCGG 3 cut(s) 66, 258, 347
BslFI GGGAC 2 cut(s) 217, 372
BslI CCNNNNNNNGG 3 cut(s) 52, 85, 614
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 2 cut(s) 217, 372
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 314, 345, 604
Bsp143I GATC 6 cut(s) 80, 205, 394, 406, 463, 550
BspACI CCGC 5 cut(s) 43, 524, 543, 612, 615
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 3 cut(s) 389, 414, 545
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 2 cut(s) 50, 305
BssMI GATC 6 cut(s) 80, 205, 394, 406, 463, 550
Bst2UI CCWGG 2 cut(s) 51, 662
Bst4CI ACNGT 3 cut(s) 25, 609, 649
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 3 cut(s) 273, 366, 391
BstF5I GGATG 2 cut(s) 532, 586
BstH2I RGCGCY 2 cut(s) 59, 621
BstHHI GCGC 2 cut(s) 58, 620
BstKTI GATC 6 cut(s) 83, 208, 397, 409, 466, 553
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 6 cut(s) 80, 205, 394, 406, 463, 550
BstNI CCWGG 2 cut(s) 51, 662
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 49, 64, 345, 660
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 574, 607
BstX2I RGATCY 4 cut(s) 205, 394, 406, 463
BstYI RGATCY 4 cut(s) 205, 394, 406, 463
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 549
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 532, 586
Cac8I GCNNGC 1 cut(s) 658
CfoI GCGC 2 cut(s) 58, 620
ClaI ATCGAT 1 cut(s) 549
Csp6I GTAC 2 cut(s) 370, 532
CviAII CATG 4 cut(s) 91, 181, 241, 286
CviJI RGCY 8 cut(s) 7, 40, 89, 277, 312, 435, 597, 656
CviKI_1 RGCY 8 cut(s) 7, 40, 89, 277, 312, 435, 597, 656
CviQI GTAC 2 cut(s) 370, 532
DdeI CTNAG 3 cut(s) 273, 366, 391
DpnI GATC 6 cut(s) 82, 207, 396, 408, 465, 552
DpnII GATC 6 cut(s) 80, 205, 394, 406, 463, 550
DraIII CACNNNGTG 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 87
EciI GGCGGA 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 49, 660
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 4 cut(s) 94, 184, 244, 289
FaiI YATR 7 cut(s) 92, 159, 182, 242, 287, 300, 492
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 2 cut(s) 217, 372
FatI CATG 4 cut(s) 90, 180, 240, 285
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 588, 613, 616, 621
FokI GGATG 2 cut(s) 539, 593
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 588, 613, 616, 621
FspBI CTAG 1 cut(s) 431
GlaI GCGC 2 cut(s) 57, 619
GluI GCNGC 4 cut(s) 588, 613, 616, 621
HaeII RGCGCY 2 cut(s) 59, 621
HaeIII GGCC 1 cut(s) 89
HapII CCGG 3 cut(s) 66, 258, 347
HhaI GCGC 2 cut(s) 58, 620
Hin1II CATG 4 cut(s) 94, 184, 244, 289
Hin6I GCGC 2 cut(s) 56, 618
HinP1I GCGC 2 cut(s) 56, 618
HpaII CCGG 3 cut(s) 66, 258, 347
HphI GGTGA 3 cut(s) 272, 361, 403
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 80, 309, 539
Hpy188III TCNNGA 4 cut(s) 187, 203, 404, 513
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 25, 609, 649
HpyCH4V TGCA 2 cut(s) 246, 343
HpyF3I CTNAG 3 cut(s) 273, 366, 391
Hsp92II CATG 4 cut(s) 94, 184, 244, 289
HspAI GCGC 2 cut(s) 56, 618
Kzo9I GATC 6 cut(s) 80, 205, 394, 406, 463, 550
LmnI GCTCC 2 cut(s) 307, 309
Lsp1109I GCAGC 2 cut(s) 574, 607
LweI GCATC 3 cut(s) 253, 255, 342
MaeI CTAG 1 cut(s) 431
MalI GATC 6 cut(s) 82, 207, 396, 408, 465, 552
MboI GATC 6 cut(s) 80, 205, 394, 406, 463, 550
MboII GAAGA 4 cut(s) 458, 473, 621, 624
MflI RGATCY 4 cut(s) 205, 394, 406, 463
MhlI GDGCHC 3 cut(s) 314, 345, 604
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 517
MluNI TGGCCA 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 454, 558
MnlI CCTC 6 cut(s) 107, 121, 232, 315, 424, 566
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 66, 258, 347
MspR9I CCNGG 4 cut(s) 51, 66, 347, 662
MvaI CCWGG 2 cut(s) 51, 662
NciI CCSGG 2 cut(s) 66, 347
NdeII GATC 6 cut(s) 80, 205, 394, 406, 463, 550
NlaIII CATG 4 cut(s) 94, 184, 244, 289
NlaIV GGNNCC 1 cut(s) 382
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 465
PkrI GCNGC 4 cut(s) 589, 614, 617, 622
PscI ACATGT 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 49, 660
PspGI CCWGG 2 cut(s) 49, 660
PspN4I GGNNCC 1 cut(s) 382
PsuI RGATCY 4 cut(s) 205, 394, 406, 463
RsaI GTAC 2 cut(s) 371, 533
RsaNI GTAC 2 cut(s) 370, 532
SacI GAGCTC 1 cut(s) 314
SatI GCNGC 4 cut(s) 588, 613, 616, 621
Sau3AI GATC 6 cut(s) 80, 205, 394, 406, 463, 550
ScrFI CCNGG 4 cut(s) 51, 66, 347, 662
SduI GDGCHC 3 cut(s) 314, 345, 604
SetI ASST 4 cut(s) 20, 293, 314, 416
SfaNI GCATC 3 cut(s) 253, 255, 342
Sse9I AATT 1 cut(s) 517
SsiI CCGC 5 cut(s) 43, 524, 543, 612, 615
SspI AATATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 431
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 4 cut(s) 49, 64, 345, 660
TaaI ACNGT 3 cut(s) 25, 609, 649
TaqI TCGA 1 cut(s) 549
TasI AATT 1 cut(s) 517
TauI GCSGC 2 cut(s) 615, 618
TseI GCWGC 2 cut(s) 587, 620
TspDTI ATGAA 1 cut(s) 474
VneI GTGCAC 1 cut(s) 341
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.