MD16G1135100.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
10370765 .. 10377806
7042 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1135100.v1.1.491

Sequence Viewer

Length: 3885 bp
ATGGCTGAGGAAAATCCTGTTAACGGAGATGTAATCAAGGAGGAGGGTACGACAGCATCAAACGGAAACTCAGCAGTGGTGGATTCTGAAAACAACGCACAAGATACAAGCAAGAGCAAGGAGGATGGCACCAAAACGGTTCCATTTCACAAGCTTTTCTCCTTTGCTGATTCCTTGGATTACCTGTTAATGTCTGTTGGTACAATCAGTGCCATTGGAAATGGGATCTGTTTGCCTCTCATGACCATAATCCTTGGAGATTTAATTAATTCTTTTGGAGGAGCGGGGAATACCAAAGGCGTGGTTGATGCAGTTTCCGAGGTGGCTCTAAAGTTCGTTTATTTGGCTGTGGCAGCTGCTGCTCTTTCATTTCTACAAATGTCTTGCTGGATGGTCACTGGAGAGAGACAAGCTTCACGAATAAGAAGTTTATACTTGAAAACAATTATAAGGCAAGATGTTGGCTTTTTTGATAAAGAAACGAACACTGGGGAAATTGTTGGGAGGATGTCAGGTGATACCGTGCTCATTCAAGAGGCAATGGGCGAAAAGGTAGGAAGTTTTATCCAATTAATTGCAACATTCATCGGAGGCTTTGTTATAGCATTTGTTAAGGGATGGCTTCTCACGCTTGTCATGCTATCATCTCTTCCTCTTCTCGTCCTCTCTGGTGCCGTCATTGGCATAATTATATCAAAGTTGGCATCCCAGGGACAAACTGCTTATTCACAGGCAGCAATTGTAGTAGAGCAGACAATTGGTTCAATAAGAACTGTTGCATCCTTTACGGGAGAAAAACAAGCTATAGCTAATTACGACAACTCCTTAATTAAGGCATACAATTCTGGTGTACAAGAGGGCTTGGCATCTGGATTTGGAATTGGAGCGGTAATGCTTGTTATGATGTGTAGTTATGCTTTGGCTATATGGTTTGGCGGAAAGATGATTCTTGAAAGAGGATATACAGGAGGAGAAGTAATAAATGTAATTTTCGCTGTGCTGACTGGTTCCATGTCTCTTGGGCAAGCATCTCCATCCATGAATGCATTTGCTGCTGGACAAGCTGCAGCTTATAAGATGTTGGAGACGATTAACCGAAAGCCGGAGATAGATGCTTATGATACTAATGGGAAGCAGTTGCACGATATACGTGGAGACATAGAACTGAGGGATGTTCATTTTAGTTATCCTACGAGACCGGATGAACAAATATTCCATGGATTTTCACTCTCAATACCTACTGGTGTAACTGCTGCTTTGGTTGGAGAGAGCGGAAGTGGTAAATCAACTGTAATCAGTTTGATTGAGAGATTTTATGACCCCCAAGCTGGTGAAGTTCTTATTGATGGTATTAATCTGAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCCGTTTTGTTTACCTCTAGCATTAAAGATAACATTGCCTACGGGAAGGATGGTGCCACTGATGAAGAAATACTGGCTGCTTCTGAGCTCGCTAATGCTGCTAAATTCATAGACAAACTGCCTCAGGGACTAGACACAATGGTTGGTGAACATGGAGCTCAGCTGTCTGGGGGCCAAAAGCAGAGAGTTGCCATAGCTAGAGCAATTCTGAAAGACCCAAGAATTCTACTATTAGATGAAGCCACAAGTGCTCTTGATGCAGAATCTGAGAGAGTTGTGCAGGAGGCACTGGACAGAATTATGGTAAACCGAACCACAGTCATTGTAGCCCACCGTTTGAGCACAGTAAGGGATGCTGACACCATTGCTGTTATACGCAGGGGAACAATTGTCGAAAAAGGTCCACATTCTGAGCTAATCAAGGACTCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAAGAAATGAGCAGTGTGTCAGAACAAACATCTGTGAATGATCATGAAAGGCCAGAAATTATAAGTATGGATTATCGGAAACATTCAAGACAAAGACTTTCAAACTTACGATCCATAAGCAAGGGATCATCTGGAAGAGGAAGTAGCAGTCATCATTCCTTCTCAGTCTCATATGATGTGCCCACTGCAGTAGGTGTCCCTGAAGCAGCACATGCAGGACCTGATATTCCTGAGTCAGCGTCATCAAGTGCGCCTCCAGAAGTTTCACTTCGCCGCCTGGCGTACTTGAACAAGCCAGAGATCCCTGTTTTATTACTAGGTACCATAGCCGCAGTAGCGAATGGGTCAATCTTACCTATTTTTGGGGTACTGATATCCAGTGTAATCAAGTCCTTCTTTGAGCCACCTCGTGAACTCCGAAAGGACTCTGAGTTTTGGGCCGTAATCTTCATTGTTCTGGGAGTGGCATCCTTCATGGTACTTCCCGCAAGACAGTACCTTTTTGCTGTGGCTGGTTGTAAATTAATAAAACGAGTCCGATCTATGTGCTTTAAGAAGGTGGTTTACATGGAAGTAAGTTGGTTTGACGATCCCGAGCACTCGAGTGGTGCAATTGGTGCAAGGCTTTCTGCAGATGCAGCTTCTCTGCGAGGGCTGGTTGGAGATGCTCTAGCTTTGGTTGTTGAGAATCTAGCAATGGCAATTGCTGGTTTGGTGATTGCTTTTGTCGCAAATTGGCAACTCGCTCTTATAATCCTCGTTCTGCTTCCGCTGTTAGGAGTAACTGGTTACGTTCAAGTCAAGTTCATGACAGGATTCAGTGCAGATGCAAAGAAAATGTACGAGGAGGCAAGTCAAGTAGCGACTGATGCTGTAGGGAGTATTAGAACAATTGCTTCCTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAGAAAATGTGAAGGCCCTATTAAGACAGGGATAAGACGAGGGTTAATCAGCGGGATAGGATTTGGGCTATCATTCTTTTTTCTTTTTTCTGTGTACGCCTGTAGTTTTTATGCTGGTGCCCGACTTGTTGCAGCAGGCAAGACGACATTCTCTGATGTTTTCCGGGTTTTCTTTGCTCTCACTATAACAGCTGTTGGAGTGTCTCAGTCTGGATCCCTAGCCCCTGATGTAAGTAAAGTAAAAAGCTCTGCTGCTTCCATATTTGCAATTCTTGACCGGAAATCAAAGATAGACTCCAGTGATGACTCAGGAAAAACTATAGAAAATGTTAAGGGAGAAATTGAATTTCGACATGTGAGCTTCAAGTATCCAACCAGACCTGACGTTCAAATTTTTGAGGATCTTTGCTTGACCATCCATCATGGCAAGACAGTTGCTCTGGTTGGAGAAAGCGGAAGTGGGAAATCAACAGTTGTCTCCTTGTTGCAGAGATTTTATGATCCTGATTCAGGTTACATTACACTAGATGGAGTGGAAATCCAAAAGCTACAGTTAAAGTGGTTAAGACAGCAAATGGGGCTGGTGAGCCAGGAGCCTGTATTGTTTAATGACACAATCCGAGCCAACATTGCATATGGAAAGGAAGGGGATGCAACGGAAGCTGAAATTATAGCTGCAGCAGAATTGGCAAACGCTCACAAATTCATCAGTAGTTTACAACAGGGTTATGATACAACCGTAGGAGAGCGGGGTGTTCAGTTGTCCGGCGGACAGAAGCAAAGGGTGGCAATTGCAAGAGCCATAATGAAGGCCCCAAAGATTTTACTACTAGATGAAGCCACAAGTGCGCTTGATGCCGAATCCGAACGAGTTGTTCAAGATGCATTGGATCGTGTCATGGTGGATCGAACCACAGTGGTGATTGCTCATCGGTTATCCACGATCAGGAGTGCAGATTTAATAGCCGTGGTGAAAAATGGAGTGATTGCAGAGAAAGGAAAGCATGAAACTTTGCTCAATGTCGAGGATGGCATTTATGCTTCTTTGGTAGCACTCCATGCAAGTACCTCATCATAG

Protein Analysis

1295

Amino Acids

139.1

Weight (kDa)

5.86

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 66 - 338 2.6e-62 ABC transporter transmembrane region
ABC_tran PF00005 406 - 554 2.3e-33 ABC transporter
ABC_membrane PF00664 728 - 1001 3.8e-59 ABC transporter transmembrane region
ABC_tran PF00005 1069 - 1218 1.4e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 449, 1074, 1865, 1934, 2624
Acc65I GGTACC 1 cut(s) 2192
AccB1I GGYRCC 5 cut(s) 128, 671, 1466, 2192, 2924
AccBSI CCGCTC 4 cut(s) 284, 887, 1272, 3556
AcsI RAATTY 5 cut(s) 1517, 1635, 3152, 3198, 3509
AcuI CTGAAG 2 cut(s) 2094, 2802
AdeI CACNNNGTG 1 cut(s) 2282
AfiI CCNNNNNNNGG 7 cut(s) 23, 1102, 1328, 2234, 2648, 3317, 3753
AflIII ACRYGT 1 cut(s) 3160
AjnI CCWGG 4 cut(s) 708, 1407, 2148, 3396
AleI CACNNNNGTG 2 cut(s) 2475, 3725
AloI GAACNNNNNNTCC 2 cut(s) 1197, 1229
Alw21I GWGCWC 6 cut(s) 528, 1503, 1573, 1666, 1757, 2472
Alw26I GTCTC 8 cut(s) 400, 1020, 1079, 1149, 1189, 2044, 3015, 3289
AlwNI CAGNNNCTG 3 cut(s) 359, 1679, 2093
Ama87I CYCGRG 2 cut(s) 2465, 2473
AoxI GGCC 6 cut(s) 1396, 1585, 1922, 2310, 2821, 3618
ApoI RAATTY 5 cut(s) 1517, 1635, 3152, 3198, 3509
AseI ATTAAT 4 cut(s) 267, 572, 1353, 2396
Asp700I GAANNNNTTC 1 cut(s) 1364
Asp718I GGTACC 1 cut(s) 2192
AspLEI GCGC 2 cut(s) 2125, 3658
AspS9I GGNCC 6 cut(s) 1585, 1814, 2090, 2310, 2822, 3619
AsuC2I CCSGG 1 cut(s) 2972
AsuHPI GGTGA 8 cut(s) 527, 1343, 1571, 2599, 2803, 3403, 3739, 3790
AvaI CYCGRG 2 cut(s) 2465, 2473
AvaII GGWCC 2 cut(s) 1814, 2090
AxyI CCTNAGG 1 cut(s) 1536
BaeGI GKGCMC 2 cut(s) 2055, 2929
BaeI ACNNNNGTAYC 2 cut(s) 3531, 3564
BamHI GGATCC 1 cut(s) 3020
BanI GGYRCC 5 cut(s) 128, 671, 1466, 2192, 2924
BanII GRGCYC 2 cut(s) 1503, 1573
BarI GAAGNNNNNNTAC 2 cut(s) 2420, 2452
BauI CACGAG 1 cut(s) 2280
Bbv12I GWGCWC 6 cut(s) 528, 1503, 1573, 1666, 1757, 2472
BbvCI CCTCAGC 1 cut(s) 6
BceAI ACGGC 3 cut(s) 659, 2297, 3758
BcgI CGANNNNNNTGC 2 cut(s) 2400, 2434
BciT130I CCWGG 4 cut(s) 710, 1409, 2150, 3398
BciVI GTATCC 1 cut(s) 3186
BclI TGATCA 1 cut(s) 1912
BcnI CCSGG 1 cut(s) 2972
BcoDI GTCTC 8 cut(s) 400, 1020, 1079, 1149, 1189, 2044, 3015, 3289
BfaI CTAG 9 cut(s) 1431, 1544, 1611, 2189, 2543, 2564, 3026, 3332, 3638
BfmI CTRYAG 9 cut(s) 804, 1065, 2058, 2502, 2745, 2908, 3126, 3356, 3483
BfuI GTATCC 1 cut(s) 3186
BlpI GCTNAGC 1 cut(s) 1572
Bme1390I CCNGG 5 cut(s) 710, 1409, 2150, 2972, 3398
Bme18I GGWCC 2 cut(s) 1814, 2090
BmeT110I CYCGRG 2 cut(s) 2465, 2473
BmgT120I GGNCC 6 cut(s) 1585, 1814, 2090, 2310, 2822, 3619
BmrFI CCNGG 5 cut(s) 710, 1409, 2150, 2972, 3398
BmrI ACTGGG 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 498
BpmI CTGGAG 3 cut(s) 420, 2112, 3088
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 1572
BpuMI CCSGG 1 cut(s) 2972
BsaAI YACGTR 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 1189
BsaJI CCNNGG 7 cut(s) 174, 253, 318, 708, 709, 1216, 3774
BsaWI WCCGGW 2 cut(s) 1198, 3084
BsaXI ACNNNNNCTCC 6 cut(s) 582, 612, 806, 836, 960, 990
Bsc4I CCNNNNNNNGG 7 cut(s) 23, 1102, 1328, 2234, 2648, 3317, 3753
Bse1I ACTGG 9 cut(s) 403, 493, 1009, 1246, 1491, 1707, 2250, 2662, 3105
Bse21I CCTNAGG 1 cut(s) 1536
Bse3DI GCAATG 5 cut(s) 546, 1446, 1776, 2574, 3435
BseBI CCWGG 4 cut(s) 710, 1409, 2150, 3398
BseDI CCNNGG 7 cut(s) 174, 253, 318, 708, 709, 1216, 3774
BseLI CCNNNNNNNGG 7 cut(s) 23, 1102, 1328, 2234, 2648, 3317, 3753
BseMI GCAATG 5 cut(s) 546, 1446, 1776, 2574, 3435
BseNI ACTGG 9 cut(s) 403, 493, 1009, 1246, 1491, 1707, 2250, 2662, 3105
BseRI GAGGAG 4 cut(s) 56, 294, 984, 2732
BseSI GKGCMC 2 cut(s) 2055, 2929
BsgI GTGCAG 3 cut(s) 1712, 2715, 3780
BshFI GGCC 6 cut(s) 1398, 1587, 1924, 2312, 2823, 3620
BshNI GGYRCC 5 cut(s) 128, 671, 1466, 2192, 2924
BsiHKAI GWGCWC 6 cut(s) 528, 1503, 1573, 1666, 1757, 2472
BsiHKCI CYCGRG 2 cut(s) 2465, 2473
BsiSI CCGG 5 cut(s) 1103, 1199, 2971, 3085, 3573
BslFI GGGAC 3 cut(s) 726, 1554, 2054
BslI CCNNNNNNNGG 7 cut(s) 23, 1102, 1328, 2234, 2648, 3317, 3753
BsmAI GTCTC 8 cut(s) 400, 1020, 1079, 1149, 1189, 2044, 3015, 3289
BsmBI CGTCTC 1 cut(s) 1079
BsmFI GGGAC 3 cut(s) 726, 1554, 2054
BsmI GAATGC 1 cut(s) 1048
BsnI GGCC 6 cut(s) 1398, 1587, 1924, 2312, 2823, 3620
Bso31I GGTCTC 1 cut(s) 1189
BsoBI CYCGRG 2 cut(s) 2465, 2473
Bsp1286I GDGCHC 8 cut(s) 528, 1503, 1573, 1666, 1757, 2055, 2472, 2929
Bsp1407I TGTACA 1 cut(s) 850
Bsp1720I GCTNAGC 1 cut(s) 1572
Bsp19I CCATGG 1 cut(s) 1216
BspANI GGCC 6 cut(s) 1398, 1587, 1924, 2312, 2823, 3620
BspHI TCATGA 3 cut(s) 240, 1915, 2679
BspMAI CTGCAG 4 cut(s) 1069, 2062, 2506, 3487
BspT107I GGYRCC 5 cut(s) 128, 671, 1466, 2192, 2924
BspTNI GGTCTC 1 cut(s) 1189
BsrBI CCGCTC 4 cut(s) 284, 887, 1272, 3556
BsrDI GCAATG 5 cut(s) 546, 1446, 1776, 2574, 3435
BsrGI TGTACA 1 cut(s) 850
BsrI ACTGG 9 cut(s) 403, 493, 1009, 1246, 1491, 1707, 2250, 2662, 3105
BssECI CCNNGG 7 cut(s) 174, 253, 318, 708, 709, 1216, 3774
BssSI CACGAG 1 cut(s) 2280
BssT1I CCWWGG 3 cut(s) 174, 253, 1216
Bst2BI CACGAG 1 cut(s) 2280
Bst2UI CCWGG 4 cut(s) 710, 1409, 2150, 3398
Bst6I CTCTTC 4 cut(s) 654, 660, 2002, 2778
BstAPI GCANNNNNTGC 5 cut(s) 359, 1052, 2084, 2489, 3866
BstAUI TGTACA 1 cut(s) 850
BstBAI YACGTR 1 cut(s) 1151
BstC8I GCNNGC 4 cut(s) 1026, 1503, 1859, 2944
BstDSI CCRYGG 2 cut(s) 1216, 3774
BstENI CCTNNNNNAGG 1 cut(s) 3315
BstHHI GCGC 2 cut(s) 2125, 3658
BstMAI GTCTC 8 cut(s) 400, 1020, 1079, 1149, 1189, 2044, 3015, 3289
BstNI CCWGG 4 cut(s) 710, 1409, 2150, 3398
BstNSI RCATGY 2 cut(s) 2087, 3164
BstSCI CCNGG 5 cut(s) 708, 1407, 2148, 2970, 3396
BstSFI CTRYAG 9 cut(s) 804, 1065, 2058, 2502, 2745, 2908, 3126, 3356, 3483
BstSLI GKGCMC 2 cut(s) 2055, 2929
BstX2I RGATCY 4 cut(s) 225, 2172, 3020, 3208
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 4 cut(s) 225, 2172, 3020, 3208
Bsu36I CCTNAGG 1 cut(s) 1536
BsuI GTATCC 1 cut(s) 3186
BsuRI GGCC 6 cut(s) 1398, 1587, 1924, 2312, 2823, 3620
BtgI CCRYGG 2 cut(s) 1216, 3774
BtsI GCAGTG 3 cut(s) 81, 1891, 2055
Cac8I GCNNGC 4 cut(s) 1026, 1503, 1859, 2944
CaiI CAGNNNCTG 3 cut(s) 359, 1679, 2093
CciI TCATGA 3 cut(s) 240, 1915, 2679
CfoI GCGC 2 cut(s) 2125, 3658
Cfr13I GGNCC 6 cut(s) 1585, 1814, 2090, 2310, 2822, 3619
CseI GACGC 1 cut(s) 2100
CspCI CAANNNNNGTGG 2 cut(s) 1717, 1752
DraIII CACNNNGTG 1 cut(s) 2282
Eam1104I CTCTTC 4 cut(s) 654, 660, 2002, 2778
EarI CTCTTC 4 cut(s) 654, 660, 2002, 2778
EciI GGCGGA 2 cut(s) 951, 3591
Ecl136II GAGCTC 2 cut(s) 1501, 1571
Eco130I CCWWGG 3 cut(s) 174, 253, 1216
Eco147I AGGCCT 1 cut(s) 1398
Eco24I GRGCYC 2 cut(s) 1503, 1573
Eco31I GGTCTC 1 cut(s) 1189
Eco32I GATATC 1 cut(s) 2247
Eco47I GGWCC 2 cut(s) 1814, 2090
Eco53kI GAGCTC 2 cut(s) 1501, 1571
Eco57I CTGAAG 2 cut(s) 2094, 2802
Eco81I CCTNAGG 1 cut(s) 1536
Eco88I CYCGRG 2 cut(s) 2465, 2473
EcoICRI GAGCTC 2 cut(s) 1501, 1571
EcoNI CCTNNNNNAGG 1 cut(s) 3315
EcoO109I RGGNCCY 3 cut(s) 2090, 2822, 3619
EcoRI GAATTC 1 cut(s) 1635
EcoRII CCWGG 4 cut(s) 708, 1407, 2148, 3396
EcoRV GATATC 1 cut(s) 2247
EcoT14I CCWWGG 3 cut(s) 174, 253, 1216
EcoT22I ATGCAT 2 cut(s) 1048, 3694
EcoT38I GRGCYC 2 cut(s) 1503, 1573
ErhI CCWWGG 3 cut(s) 174, 253, 1216
Esp3I CGTCTC 1 cut(s) 1079
FalI AAGNNNNNCTT 4 cut(s) 2124, 2156, 2252, 2284
FaqI GGGAC 3 cut(s) 726, 1554, 2054
FauI CCCGC 4 cut(s) 277, 2365, 2852, 3549
FauNDI CATATG 2 cut(s) 2044, 3442
FbaI TGATCA 1 cut(s) 1912
FriOI GRGCYC 2 cut(s) 1503, 1573
FspBI CTAG 9 cut(s) 1431, 1544, 1611, 2189, 2543, 2564, 3026, 3332, 3638
GlaI GCGC 2 cut(s) 2124, 3657
GsuI CTGGAG 3 cut(s) 420, 2112, 3088
HaeIII GGCC 6 cut(s) 1398, 1587, 1924, 2312, 2823, 3620
HapII CCGG 5 cut(s) 1103, 1199, 2971, 3085, 3573
HgaI GACGC 1 cut(s) 2100
HhaI GCGC 2 cut(s) 2125, 3658
Hin6I GCGC 2 cut(s) 2123, 3656
HinP1I GCGC 2 cut(s) 2123, 3656
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 2 cut(s) 152, 411
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 5 cut(s) 1103, 1199, 2971, 3085, 3573
HphI GGTGA 8 cut(s) 527, 1343, 1571, 2599, 2803, 3403, 3739, 3790
HpyCH4IV ACGT 3 cut(s) 1150, 2664, 3192
HpySE526I ACGT 3 cut(s) 1150, 2664, 3192
HspAI GCGC 2 cut(s) 2123, 3656
KpnI GGTACC 1 cut(s) 2196
Ksp22I TGATCA 1 cut(s) 1912
KspAI GTTAAC 1 cut(s) 22
LmnI GCTCC 5 cut(s) 281, 884, 1568, 1847, 3400
MaeI CTAG 9 cut(s) 1431, 1544, 1611, 2189, 2543, 2564, 3026, 3332, 3638
MaeII ACGT 3 cut(s) 1150, 2664, 3192
MaeIII GTNAC 5 cut(s) 394, 1246, 2653, 2660, 3320
MbiI CCGCTC 4 cut(s) 284, 887, 1272, 3556
MboII GAAGA 6 cut(s) 641, 647, 1490, 2019, 2311, 2795
MfeI CAATTG 7 cut(s) 738, 756, 1800, 2484, 2574, 2763, 3597
MflI RGATCY 4 cut(s) 225, 2172, 3020, 3208
MhlI GDGCHC 8 cut(s) 528, 1503, 1573, 1666, 1757, 2055, 2472, 2929
MlyI GAGTC 6 cut(s) 1832, 2114, 2291, 2415, 3095, 3107
MmeI TCCRAC 6 cut(s) 1062, 1243, 2512, 2983, 3203, 3232
Mph1103I ATGCAT 2 cut(s) 1048, 3694
MroXI GAANNNNTTC 1 cut(s) 1364
MslI CAYNNNNRTG 2 cut(s) 2475, 3725
MspA1I CMGCKG 6 cut(s) 356, 1372, 1576, 2644, 2859, 2999
MspI CCGG 5 cut(s) 1103, 1199, 2971, 3085, 3573
MspR9I CCNGG 5 cut(s) 710, 1409, 2150, 2972, 3398
MunI CAATTG 7 cut(s) 738, 756, 1800, 2484, 2574, 2763, 3597
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 4 cut(s) 710, 1409, 2150, 3398
NciI CCSGG 1 cut(s) 2972
NcoI CCATGG 1 cut(s) 1216
NdeI CATATG 2 cut(s) 2044, 3442
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 2 cut(s) 1048, 3694
NspI RCATGY 2 cut(s) 2087, 3164
OliI CACNNNNGTG 2 cut(s) 2475, 3725
PacI TTAATTAA 2 cut(s) 267, 831
PaeR7I CTCGAG 1 cut(s) 2473
PagI TCATGA 3 cut(s) 240, 1915, 2679
PasI CCCWGGG 1 cut(s) 709
PceI AGGCCT 1 cut(s) 1398
PciI ACATGT 1 cut(s) 3160
PcsI WCGNNNNNNNCGW 1 cut(s) 2287
PctI GAATGC 1 cut(s) 1048
PdmI GAANNNNTTC 1 cut(s) 1364
PfeI GAWTC 8 cut(s) 83, 170, 946, 1676, 2560, 2688, 3314, 3668
PleI GAGTC 6 cut(s) 1832, 2113, 2291, 2414, 3095, 3107
PpsI GAGTC 6 cut(s) 1832, 2113, 2291, 2414, 3095, 3107
Ppu21I YACGTR 1 cut(s) 1151
PpuMI RGGWCCY 1 cut(s) 2090
PscI ACATGT 1 cut(s) 3160
PshBI ATTAAT 4 cut(s) 267, 572, 1353, 2396
PsiI TTATAA 5 cut(s) 449, 1074, 1865, 1934, 2624
Psp124BI GAGCTC 2 cut(s) 1503, 1573
Psp5II RGGWCCY 1 cut(s) 2090
Psp6I CCWGG 4 cut(s) 708, 1407, 2148, 3396
PspGI CCWGG 4 cut(s) 708, 1407, 2148, 3396
PspPI GGNCC 6 cut(s) 1585, 1814, 2090, 2310, 2822, 3619
PspPPI RGGWCCY 1 cut(s) 2090
PspXI VCTCGAGB 1 cut(s) 2473
PstI CTGCAG 4 cut(s) 1069, 2062, 2506, 3487
PstNI CAGNNNCTG 3 cut(s) 359, 1679, 2093
PsuI RGATCY 4 cut(s) 225, 2172, 3020, 3208
PvuII CAGCTG 4 cut(s) 356, 1372, 1576, 2999
RseI CAYNNNNRTG 2 cut(s) 2475, 3725
SacI GAGCTC 2 cut(s) 1503, 1573
Sau96I GGNCC 6 cut(s) 1585, 1814, 2090, 2310, 2822, 3619
SchI GAGTC 6 cut(s) 1832, 2114, 2291, 2415, 3095, 3107
ScrFI CCNGG 5 cut(s) 710, 1409, 2150, 2972, 3398
SduI GDGCHC 8 cut(s) 528, 1503, 1573, 1666, 1757, 2055, 2472, 2929
SfcI CTRYAG 9 cut(s) 804, 1065, 2058, 2502, 2745, 2908, 3126, 3356, 3483
Sfr274I CTCGAG 1 cut(s) 2473
SinI GGWCC 2 cut(s) 1814, 2090
SlaI CTCGAG 1 cut(s) 2473
SmiMI CAYNNNNRTG 2 cut(s) 2475, 3725
SmlI CTYRAG 1 cut(s) 2473
SmoI CTYRAG 1 cut(s) 2473
SseBI AGGCCT 1 cut(s) 1398
SspI AATATT 1 cut(s) 1212
SspMI CTAG 9 cut(s) 1431, 1544, 1611, 2189, 2543, 2564, 3026, 3332, 3638
SstI GAGCTC 2 cut(s) 1503, 1573
StuI AGGCCT 1 cut(s) 1398
StyD4I CCNGG 5 cut(s) 708, 1407, 2148, 2970, 3396
StyI CCWWGG 3 cut(s) 174, 253, 1216
TaiI ACGT 3 cut(s) 1153, 2667, 3195
TaqI TCGA 5 cut(s) 1806, 2474, 3157, 3715, 3831
TatI WGTACW 1 cut(s) 850
TauI GCSGC 2 cut(s) 2148, 2204
TfiI GAWTC 8 cut(s) 83, 170, 946, 1676, 2560, 2688, 3314, 3668
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspGWI ACGGA 3 cut(s) 39, 78, 3479
VpaK11BI GGWCC 2 cut(s) 1814, 2090
VspI ATTAAT 4 cut(s) 267, 572, 1353, 2396
XagI CCTNNNNNAGG 1 cut(s) 3315
XapI RAATTY 5 cut(s) 1517, 1635, 3152, 3198, 3509
XceI RCATGY 2 cut(s) 2087, 3164
XhoI CTCGAG 1 cut(s) 2473
XmnI GAANNNNTTC 1 cut(s) 1364
XspI CTAG 9 cut(s) 1431, 1544, 1611, 2189, 2543, 2564, 3026, 3332, 3638
Zsp2I ATGCAT 2 cut(s) 1048, 3694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.