RchiOBHm_Chr3g0448061

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000116
Physical Location & Seq
Reverse (-)
468445 .. 473678
5234 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41551

Sequence Viewer

Length: 3783 bp
ATGGCAGAGAAAAATGGCTTGGGTGGCAATACAAATATGGATGAAGATGAAGCACTACCATCAGAAAGCAAAGCGGAAAAAGCAAACAGAAGCTGTAGCATCACTGAGATACAGGAAGACTCAAACAAGAAGACCAAAGGAAATGAGACCGTTCCATTTCTCAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTATTGATGACCATCGGCACAATTGGTGCCATTGGGAATGGTTTGTGTATGCCCATTATGACTATACTCTTTGGCCAACTGACTGATTCTTTTGGATATAATTACAATAGCAAAGACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTGTACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGGTTGGAAAGTTTTTACAACTAATATCGACATTCATTGGAGGCATTGTCATAGCATTCATCAAAGGCTGGCTTCTAACCCTCGTCCTGATGTCCACTATTCCATTTCTTGTGGCAGCCGGAGCAATAATGTCCATTATCATAGTCAAAATGGCTTCCCGAGGACAAAATGCCTATGCGAAAGCTGCAAGTGTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCATCATTTACCGGAGAGACACAAGCTATAACAAACTATAAGAAATATCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTGGGTTTTGGCATGTTTATGTTGGTTATGTTATCCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAACGAGGATATAAAGGAGGAGCTGTGGTCAATGTGATTGTTGCTGTGCTGGCTGGTTCCATGTCTCTAGGCCAGGTATCTCCCTGTATGAGTGCATTTGCTGCTGGTCAGGCTGCAGCCTTTAAGATGTTTGAGACTATAAAGAGGAAACCAGAGATAGATGCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGACATAGAGCTGAGGGATATTTACTTCAGTTATCCAACCAGACCGAACGAACAAATATTCCAAGGATTGACTCTGAGTATCCCTAGTGGCACAACTACAGCTTTGGTTGGGCAAAGTGGAAGCGGAAAGTCGACAGTGATCTGCCTGATAGAGAGATTCTATGATCCATGGGCTGGTGAGGTTCTCGTAGATGGTATCAACCTTAAAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTAGTCAGCCAGGAACCGGTGTTGTTTGCATCGAGCATCCGGGACAATATTTTATATGGAAAGGATGGTGCAACTTCTGAAGAGATAAGAGCAGCATTAGTACTTGCAAATGCTGCTAAGTTTATTGACAAATTGCCTCAGGGGCTGGACACCATGGTTGGGGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGAGGGTTGCCATAGCTCGAGCAGTTCTTAAAGACCCGCGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACTGAGCTAATTGTACAAGAGGCATTGGACCGAATTATGGTCAATCGAACTACTCTCATTGTTGCACATCGTTTGAGCACGGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGATGGAGAAAGGTCCACACTCGGAACTAGTTAGGGATCCTGATGGAGCCTACTCTCAGCTTATACACTTGCAAGAGTTAAGTGAAGACACAGAACAAGCTGCAGACCATCAAACAACGTCAGAAATCAGTAAAAAAAAATCATTGCAAAGATCCTTAAGTCATGATTCATCCGGAGCAGGAAGTAGCAGCCGCCACTCATTCAAACTACCATTCGGATTTCCCACAGGACTTGAGGTAGTAGATATTGTTACAAAAGAACCAGAATCCCTTACAACAAGTATGCAACAATCTCCAAAGGCTCCTATCCGCCGCCTTGCCTACCTTAACAAGCCAGAGATTCCAGTGCTAGTAATTGGAGCTACAGCTGCAATAGCCAATGGTGTGATATTTCCAGTTGTTGGTCTAATAATTTCCAGTGCCATCAAAACATTATATGAACCACCTCATCAACTTAAAAAGGATTCTAAGTTTTGGGCACTAATGTATGTGACCCTTGGTTTGGCTTCCTTACTGGTGATTCCAGTAAGATCATACTTCTTTTCTGTGGCTGGATGCAAGCTAATTGAACGTATTAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGATTGGTTGGTTTGATGAGCCTCGGAGTGGCGAAATTGGTGCAAAGCTCTCGGCAAATGCAGCCACAGTGCGCTCCCTAGTTGGTGATGCACTTGCTCAGCTGATTGGAAATATTGCATCGGCAGTTGCCGGTTTAGTGATTGCTTTTGTTGCATGTTGGCAGCTGGCATTTATTGTCCTGATGATGTATGAGGAAGCAAGCCAGGTTGCTACCGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGCGCCGAAGAGAAGGTGGTGCAACAATACAACACAAAATGTGAAGGCCCTATGAGGACAGGGATAAGGCAAGGTATTATCAGTGGCATGGGATTCGGATTATCGTTCTTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTACGCAGGAGCTCAACTAGTGGTGCATGGCAAAACAACATTCTTAGATGTTTTTCGGGTTTTCTTCTCTCTAACTATGGCTGCTATGACGATTTCTCAATCGAGTTCCTTAGCTCCTGATTCATCTAAAGCCAATGCTGCTACTGCTTCTATCTTTGCCATAATAGACCAGGAGTCAAAGATTGATCCGAGTGATGAGTCTGGGATGACAATGGACAATGTAAAGGGAGATATTGAGCTTCGTAATGTATGCTTCAGGTATCCGTCCAGGCCAGACGTTCAGATTTTTCAAGACCTCAACCTAGTTATTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACCGTGATCTCACTGTTGCAAAGATTTTATGATCCTAACTCGGGTCATATTACTCTCGATGGTGTTGAAATTTGGAAGCTCCAATTGAAGTGGCTGAGGCAACAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATTCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCAACAGAAGCTGAAATCCTGGCTGCATCCGAGTCTGCCAATGCCCACAATTTCATTAGTGGCTTACAAGAGGGCTATGACACCATAGTGGGGGAACGAGGAGTCCAATTGTCAGGTGGACAGAAGCAACGTGTAGCGATTGCGCGTGCTATTGTTAAAAGCCCCAAGATCTTACTACTAGATGAGGCTACCAGTGCACTAGATGCTGAATCTGAGAAAGTAGTACAAGATGCATTAGACCTTGTCATGCTGAATCGGACAACAGTTGTGGTGGCACATAGATTATCTACAATCAGAAATGCAAACGTAATTGCAGTTGTCAGAGACGGAGCTGTAGTAGAGAAAGGAAAGCATGAGACTTTGATTAGCGTCAAGGATGGTTTCTATGCCTCCTTAGTTGCATTACACAATACACATCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1260

Amino Acids

136.28

Weight (kDa)

6.29

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 69 - 341 8.3e-58 ABC transporter transmembrane region
ABC_tran PF00005 410 - 558 1e-31 ABC transporter
ABC_membrane PF00664 722 - 870 3.9e-25 ABC transporter transmembrane region
ABC_membrane PF00664 871 - 967 1.4e-16 ABC transporter transmembrane region
ABC_tran PF00005 1035 - 1184 3.4e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 2 cut(s) 1340, 2213
AccI GTMKAC 3 cut(s) 351, 1298, 2799
AccII CGCG 2 cut(s) 1645, 3502
AccIII TCCGGA 1 cut(s) 1985
AciI CCGC 6 cut(s) 74, 1290, 1643, 2005, 2122, 2125
AclWI GGATC 8 cut(s) 1325, 1400, 1844, 1857, 1959, 2993, 3200, 3286
AcoI YGGCCR 2 cut(s) 268, 405
AcsI RAATTY 1 cut(s) 3243
AcuI CTGAAG 3 cut(s) 1177, 1509, 3052
AfaI GTAC 4 cut(s) 446, 1512, 1704, 3582
AflII CTTAAG 1 cut(s) 1969
AflIII ACRYGT 1 cut(s) 3487
AgeI ACCGGT 1 cut(s) 1426
AgsI TTSAA 7 cut(s) 186, 761, 2017, 2381, 3104, 3242, 3262
AhdI GACNNNNNGTC 1 cut(s) 2986
AhlI ACTAGT 2 cut(s) 1840, 2830
AjnI CCWGG 8 cut(s) 354, 387, 1035, 1419, 2625, 2982, 3080, 3375
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AleI CACNNNNGTG 2 cut(s) 2408, 3443
AloI GAACNNNNNNTCC 4 cut(s) 1209, 1241, 3444, 3476
Alw21I GWGCWC 4 cut(s) 1678, 1769, 2827, 3556
Alw26I GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3675, 3707
Alw44I GTGCAC 2 cut(s) 1674, 3552
AlwI GGATC 8 cut(s) 1325, 1400, 1844, 1857, 1959, 2993, 3200, 3286
AlwNI CAGNNNCTG 4 cut(s) 93, 1555, 1691, 3368
Ama87I CYCGRG 3 cut(s) 720, 1623, 3214
Aor13HI TCCGGA 1 cut(s) 1985
AoxI GGCC 5 cut(s) 268, 405, 1033, 2719, 3083
ApaLI GTGCAC 2 cut(s) 1674, 3552
ApoI RAATTY 1 cut(s) 3243
ArsI GACNNNNNNTTYG 2 cut(s) 2296, 2328
AsiGI ACCGGT 1 cut(s) 1426
AspLEI GCGC 3 cut(s) 2496, 2678, 3502
AspS9I GGNCC 3 cut(s) 1717, 1826, 2720
AsuC2I CCSGG 1 cut(s) 1451
AsuHPI GGTGA 7 cut(s) 539, 1178, 1355, 1783, 1825, 2341, 2519
AvaI CYCGRG 3 cut(s) 720, 1623, 3214
AvaII GGWCC 2 cut(s) 1717, 1826
AxyI CCTNAGG 1 cut(s) 1548
BaeGI GKGCMC 3 cut(s) 1678, 2293, 3556
BalI TGGCCA 2 cut(s) 270, 407
BamHI GGATCC 1 cut(s) 1849
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 2827
BbsI GAAGAC 3 cut(s) 123, 137, 1905
Bbv12I GWGCWC 4 cut(s) 1678, 1769, 2827, 3556
BbvCI CCTCAGC 2 cut(s) 1178, 3269
BcgI CGANNNNNNTGC 6 cut(s) 2444, 2454, 2478, 2488, 2749, 2783
BciT130I CCWGG 8 cut(s) 356, 389, 1037, 1421, 2627, 2984, 3082, 3377
BciVI GTATCC 2 cut(s) 1256, 3084
BcnI CCSGG 1 cut(s) 1451
BcoDI GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3675, 3707
BcuI ACTAGT 2 cut(s) 1840, 2830
BfmI CTRYAG 6 cut(s) 94, 1077, 1263, 1914, 2175, 3690
BfrI CTTAAG 1 cut(s) 1969
BfuI GTATCC 2 cut(s) 1256, 3084
BglI GCCNNNNNGGC 1 cut(s) 1552
BglII AGATCT 1 cut(s) 3525
BlpI GCTNAGC 1 cut(s) 2520
BmcAI AGTACT 1 cut(s) 1512
Bme1390I CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2627, 2984, 3082, 3377
Bme18I GGWCC 2 cut(s) 1717, 1826
BmeRI GACNNNNNGTC 1 cut(s) 2986
BmeT110I CYCGRG 3 cut(s) 720, 1623, 3214
BmgT120I GGNCC 3 cut(s) 1717, 1826, 2720
BmiI GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2115
BmrFI CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2627, 2984, 3082, 3377
BpiI GAAGAC 3 cut(s) 123, 137, 1905
BpmI CTGGAG 2 cut(s) 371, 522
Bpu10I CCTNAGC 3 cut(s) 1178, 2923, 3269
Bpu1102I GCTNAGC 1 cut(s) 2520
BpuEI CTTGAG 2 cut(s) 146, 2066
BpuMI CCSGG 1 cut(s) 1451
BsaBI GATNNNNATC 1 cut(s) 206
BsaI GGTCTC 2 cut(s) 140, 340
BsaJI CCNNGG 8 cut(s) 330, 721, 1228, 1334, 1563, 2308, 2444, 3144
BsaWI WCCGGW 3 cut(s) 800, 1426, 1985
Bse118I RCCGGY 2 cut(s) 1426, 2552
Bse21I CCTNAGG 1 cut(s) 1548
Bse3DI GCAATG 4 cut(s) 558, 1788, 1955, 3333
Bse8I GATNNNNATC 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 1985
BseBI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2627, 2984, 3082, 3377
BseDI CCNNGG 8 cut(s) 330, 721, 1228, 1334, 1563, 2308, 2444, 3144
BseJI GATNNNNATC 1 cut(s) 206
BseMI GCAATG 4 cut(s) 558, 1788, 1955, 3333
BseRI GAGGAG 2 cut(s) 996, 3471
BseSI GKGCMC 3 cut(s) 1678, 2293, 3556
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 2 cut(s) 1645, 3502
BshFI GGCC 5 cut(s) 270, 407, 1035, 2721, 3085
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 1426
BsiHKAI GWGCWC 4 cut(s) 1678, 1769, 2827, 3556
BsiHKCI CYCGRG 3 cut(s) 720, 1623, 3214
BsiSI CCGG 7 cut(s) 681, 801, 882, 1427, 1450, 1986, 2553
BslFI GGGAC 2 cut(s) 1466, 3297
BsmAI GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3675, 3707
BsmBI CGTCTC 1 cut(s) 3675
BsmFI GGGAC 2 cut(s) 1466, 3297
BsmI GAATGC 3 cut(s) 380, 617, 1783
BsnI GGCC 5 cut(s) 270, 407, 1035, 2721, 3085
Bso31I GGTCTC 2 cut(s) 140, 340
BsoBI CYCGRG 3 cut(s) 720, 1623, 3214
Bsp1286I GDGCHC 5 cut(s) 1678, 1769, 2293, 2827, 3556
Bsp13I TCCGGA 1 cut(s) 1985
Bsp1407I TGTACA 1 cut(s) 1702
Bsp1720I GCTNAGC 1 cut(s) 2520
Bsp19I CCATGG 2 cut(s) 1334, 1563
BspACI CCGC 6 cut(s) 74, 1290, 1643, 2005, 2122, 2125
BspANI GGCC 5 cut(s) 270, 407, 1035, 2721, 3085
BspEI TCCGGA 1 cut(s) 1985
BspFNI CGCG 2 cut(s) 1645, 3502
BspHI TCATGA 2 cut(s) 865, 1975
BspLI GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2115
BspMAI CTGCAG 2 cut(s) 1081, 1918
BspPI GGATC 8 cut(s) 1325, 1400, 1844, 1857, 1959, 2993, 3200, 3286
BspT107I GGYRCC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 1969
BspTNI GGTCTC 2 cut(s) 140, 340
BsrDI GCAATG 4 cut(s) 558, 1788, 1955, 3333
BsrFI RCCGGY 2 cut(s) 1426, 2552
BsrGI TGTACA 1 cut(s) 1702
BssAI RCCGGY 2 cut(s) 1426, 2552
BssECI CCNNGG 8 cut(s) 330, 721, 1228, 1334, 1563, 2308, 2444, 3144
BssT1I CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3144
Bst2UI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2627, 2984, 3082, 3377
Bst6I CTCTTC 2 cut(s) 1485, 2676
BstAFI CTTAAG 1 cut(s) 1969
BstAPI GCANNNNNTGC 4 cut(s) 1064, 1523, 1682, 3560
BstAUI TGTACA 1 cut(s) 1702
BstC8I GCNNGC 8 cut(s) 397, 430, 632, 1014, 2372, 2589, 2623, 3504
BstDSI CCRYGG 2 cut(s) 1334, 1563
BstFNI CGCG 2 cut(s) 1645, 3502
BstHHI GCGC 3 cut(s) 2496, 2678, 3502
BstMAI GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3675, 3707
BstNI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2627, 2984, 3082, 3377
BstNSI RCATGY 2 cut(s) 901, 2580
BstSCI CCNGG 9 cut(s) 354, 387, 1035, 1419, 1449, 2625, 2982, 3080, 3375
BstSFI CTRYAG 6 cut(s) 94, 1077, 1263, 1914, 2175, 3690
BstSLI GKGCMC 3 cut(s) 1678, 2293, 3556
BstUI CGCG 2 cut(s) 1645, 3502
BstV2I GAAGAC 3 cut(s) 123, 137, 1905
BstX2I RGATCY 3 cut(s) 1849, 1964, 3525
BstYI RGATCY 3 cut(s) 1849, 1964, 3525
Bsu36I CCTNAGG 1 cut(s) 1548
BsuI GTATCC 2 cut(s) 1256, 3084
BsuRI GGCC 5 cut(s) 270, 407, 1035, 2721, 3085
BtgI CCRYGG 2 cut(s) 1334, 1563
Cac8I GCNNGC 8 cut(s) 397, 430, 632, 1014, 2372, 2589, 2623, 3504
CaiI CAGNNNCTG 4 cut(s) 93, 1555, 1691, 3368
CciI TCATGA 2 cut(s) 865, 1975
CfoI GCGC 3 cut(s) 2496, 2678, 3502
Cfr10I RCCGGY 2 cut(s) 1426, 2552
Cfr13I GGNCC 3 cut(s) 1717, 1826, 2720
CseI GACGC 1 cut(s) 3715
Csp6I GTAC 4 cut(s) 445, 1511, 1703, 3581
CspAI ACCGGT 1 cut(s) 1426
CspCI CAANNNNNGTGG 6 cut(s) 2026, 2061, 3245, 3280, 3606, 3641
CviQI GTAC 4 cut(s) 445, 1511, 1703, 3581
DriI GACNNNNNGTC 1 cut(s) 2986
EaeI YGGCCR 2 cut(s) 268, 405
Eam1104I CTCTTC 2 cut(s) 1485, 2676
Eam1105I GACNNNNNGTC 1 cut(s) 2986
EarI CTCTTC 2 cut(s) 1485, 2676
EciI GGCGGA 1 cut(s) 2111
Ecl136II GAGCTC 1 cut(s) 2825
Eco130I CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3144
Eco24I GRGCYC 1 cut(s) 2827
Eco31I GGTCTC 2 cut(s) 140, 340
Eco32I GATATC 2 cut(s) 193, 1786
Eco47I GGWCC 2 cut(s) 1717, 1826
Eco53kI GAGCTC 1 cut(s) 2825
Eco57I CTGAAG 3 cut(s) 1177, 1509, 3052
Eco81I CCTNAGG 1 cut(s) 1548
Eco88I CYCGRG 3 cut(s) 720, 1623, 3214
EcoICRI GAGCTC 1 cut(s) 2825
EcoO109I RGGNCCY 1 cut(s) 2720
EcoRII CCWGG 8 cut(s) 354, 387, 1035, 1419, 2625, 2982, 3080, 3375
EcoRV GATATC 2 cut(s) 193, 1786
EcoT14I CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3144
EcoT22I ATGCAT 1 cut(s) 3592
EcoT38I GRGCYC 1 cut(s) 2827
ErhI CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3144
Esp3I CGTCTC 1 cut(s) 3675
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 2 cut(s) 1466, 3297
FauI CCCGC 1 cut(s) 1650
FauNDI CATATG 1 cut(s) 3340
FblI GTMKAC 3 cut(s) 351, 1298, 2799
FriOI GRGCYC 1 cut(s) 2827
GlaI GCGC 3 cut(s) 2495, 2677, 3501
GsuI CTGGAG 2 cut(s) 371, 522
HaeIII GGCC 5 cut(s) 270, 407, 1035, 2721, 3085
HapII CCGG 7 cut(s) 681, 801, 882, 1427, 1450, 1986, 2553
HgaI GACGC 1 cut(s) 3715
HhaI GCGC 3 cut(s) 2496, 2678, 3502
Hin6I GCGC 3 cut(s) 2494, 2676, 3500
HinP1I GCGC 3 cut(s) 2494, 2676, 3500
HincII GTYRAC 1 cut(s) 1299
HindII GTYRAC 1 cut(s) 1299
HpaII CCGG 7 cut(s) 681, 801, 882, 1427, 1450, 1986, 2553
HphI GGTGA 7 cut(s) 539, 1178, 1355, 1783, 1825, 2341, 2519
HpyAV CCTTC 5 cut(s) 556, 863, 2680, 2711, 3344
HpyCH4IV ACGT 5 cut(s) 1931, 2383, 3090, 3487, 3663
HpySE526I ACGT 5 cut(s) 1931, 2383, 3090, 3487, 3663
HspAI GCGC 3 cut(s) 2494, 2676, 3500
Kpn2I TCCGGA 1 cut(s) 1985
MaeII ACGT 5 cut(s) 1931, 2383, 3090, 3487, 3663
MaeIII GTNAC 3 cut(s) 1166, 2062, 2302
MfeI CAATTG 3 cut(s) 216, 3257, 3464
MflI RGATCY 3 cut(s) 1849, 1964, 3525
MhlI GDGCHC 5 cut(s) 1678, 1769, 2293, 2827, 3556
MlsI TGGCCA 2 cut(s) 270, 407
MluNI TGGCCA 2 cut(s) 270, 407
MlyI GAGTC 6 cut(s) 113, 1231, 2996, 3020, 3398, 3468
MmeI TCCRAC 3 cut(s) 547, 1226, 3130
Mox20I TGGCCA 2 cut(s) 270, 407
Mph1103I ATGCAT 1 cut(s) 3592
MroI TCCGGA 1 cut(s) 1985
MscI TGGCCA 2 cut(s) 270, 407
MslI CAYNNNNRTG 3 cut(s) 902, 2408, 3443
Msp20I TGGCCA 2 cut(s) 270, 407
MspA1I CMGCKG 4 cut(s) 1588, 2180, 2524, 2587
MspCI CTTAAG 1 cut(s) 1969
MspI CCGG 7 cut(s) 681, 801, 882, 1427, 1450, 1986, 2553
MspR9I CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2627, 2984, 3082, 3377
MunI CAATTG 3 cut(s) 216, 3257, 3464
Mva1269I GAATGC 3 cut(s) 380, 617, 1783
MvaI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2627, 2984, 3082, 3377
MvnI CGCG 2 cut(s) 1645, 3502
NciI CCSGG 1 cut(s) 1451
NcoI CCATGG 2 cut(s) 1334, 1563
NdeI CATATG 1 cut(s) 3340
NlaIV GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2115
NmeAIII GCCGAG 1 cut(s) 2453
NmuCI GTSAC 2 cut(s) 1166, 2302
NsiI ATGCAT 1 cut(s) 3592
NspI RCATGY 2 cut(s) 901, 2580
OliI CACNNNNGTG 2 cut(s) 2408, 3443
PaeR7I CTCGAG 1 cut(s) 1623
PagI TCATGA 2 cut(s) 865, 1975
PctI GAATGC 3 cut(s) 380, 617, 1783
PflFI GACNNNGTC 1 cut(s) 3599
PflMI CCANNNNNTGG 2 cut(s) 1340, 2213
PfoI TCCNGGA 1 cut(s) 1449
PinAI ACCGGT 1 cut(s) 1426
PleI GAGTC 6 cut(s) 113, 1231, 2995, 3019, 3397, 3467
PpsI GAGTC 6 cut(s) 113, 1231, 2995, 3019, 3397, 3467
Psp124BI GAGCTC 1 cut(s) 2827
Psp6I CCWGG 8 cut(s) 354, 387, 1035, 1419, 2625, 2982, 3080, 3375
PspGI CCWGG 8 cut(s) 354, 387, 1035, 1419, 2625, 2982, 3080, 3375
PspN4I GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2115
PspPI GGNCC 3 cut(s) 1717, 1826, 2720
PspXI VCTCGAGB 1 cut(s) 1623
PstI CTGCAG 2 cut(s) 1081, 1918
PstNI CAGNNNCTG 4 cut(s) 93, 1555, 1691, 3368
PsuI RGATCY 3 cut(s) 1849, 1964, 3525
PsyI GACNNNGTC 1 cut(s) 3599
PvuII CAGCTG 4 cut(s) 1588, 2180, 2524, 2587
RsaI GTAC 4 cut(s) 446, 1512, 1704, 3582
RsaNI GTAC 4 cut(s) 445, 1511, 1703, 3581
RseI CAYNNNNRTG 3 cut(s) 902, 2408, 3443
SacI GAGCTC 1 cut(s) 2827
SalI GTCGAC 1 cut(s) 1297
Sau96I GGNCC 3 cut(s) 1717, 1826, 2720
ScaI AGTACT 1 cut(s) 1512
SchI GAGTC 6 cut(s) 113, 1231, 2996, 3020, 3398, 3468
ScrFI CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2627, 2984, 3082, 3377
SduI GDGCHC 5 cut(s) 1678, 1769, 2293, 2827, 3556
SfcI CTRYAG 6 cut(s) 94, 1077, 1263, 1914, 2175, 3690
Sfr274I CTCGAG 1 cut(s) 1623
SinI GGWCC 2 cut(s) 1717, 1826
SlaI CTCGAG 1 cut(s) 1623
SmiMI CAYNNNNRTG 3 cut(s) 902, 2408, 3443
SmlI CTYRAG 4 cut(s) 161, 1623, 1969, 2045
SmoI CTYRAG 4 cut(s) 161, 1623, 1969, 2045
SpeI ACTAGT 2 cut(s) 1840, 2830
SsiI CCGC 6 cut(s) 74, 1290, 1643, 2005, 2122, 2125
SspI AATATT 4 cut(s) 1224, 1459, 1650, 2536
SstI GAGCTC 1 cut(s) 2827
StyD4I CCNGG 9 cut(s) 354, 387, 1035, 1419, 1449, 2625, 2982, 3080, 3375
StyI CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3144
TaiI ACGT 5 cut(s) 1934, 2386, 3093, 3490, 3666
TaqI TCGA 8 cut(s) 483, 590, 1298, 1442, 1624, 1735, 2915, 3231
TaqII GACCGA 2 cut(s) 1225, 1734
TatI WGTACW 3 cut(s) 1510, 1702, 3580
TauI GCSGC 2 cut(s) 2007, 2127
TseFI GTSAC 2 cut(s) 1166, 2302
Tsp45I GTSAC 2 cut(s) 1166, 2302
TspGWI ACGGA 2 cut(s) 3066, 3699
Tth111I GACNNNGTC 1 cut(s) 3599
Van91I CCANNNNNTGG 2 cut(s) 1340, 2213
Vha464I CTTAAG 1 cut(s) 1969
VneI GTGCAC 2 cut(s) 1674, 3552
VpaK11BI GGWCC 2 cut(s) 1717, 1826
XapI RAATTY 1 cut(s) 3243
XbaI TCTAGA 1 cut(s) 1657
XceI RCATGY 2 cut(s) 901, 2580
XcmI CCANNNNNNNNNTGG 2 cut(s) 928, 3470
XhoI CTCGAG 1 cut(s) 1623
XmiI GTMKAC 3 cut(s) 351, 1298, 2799
ZrmI AGTACT 1 cut(s) 1512
Zsp2I ATGCAT 1 cut(s) 3592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.