Rmu_sc0000066.1_g000033

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000066.1
Physical Location & Seq
Reverse (-)
150569 .. 153138
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000066.1_g000033.1.cds

Sequence Viewer

Length: 552 bp
atgggctctgataccatgctaaaactcatagtcacagtgaaaaagcttgaaattgaagcaacaatgacaattggtctggttggtgaaagtggaagtgggaaatcgacagtggtctctttgctgcagagattttacgaccccaactctggtcacattacattagatggaatcgaaatccagaaactacagtttaagtggttgagacagaaaattgggctggtgagccaggaggctctattgtttaattacactatccgagccaacattgcatatggaaaggatggagaggcaaccgaggctgaaattatagcagctacagaactcgcaaatgaacaccagttcattagtagtttacaacatgcacctaagatattactactagatgaagccacaagtgctcttgatgctaaatctgaacgtgtggttcaagatgcattggaccgaattatggtggatcggacaataatcgtggttgctcacctgttgtccacaatcaagggtgcagatttgattgctgtggtaaaaaatggagccattgcagagaaactttga

Protein Analysis

183

Amino Acids

19.91

Weight (kDa)

5.58

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 462
AfiI CCNNNNNNNGG 2 cut(s) 146, 448
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 3 cut(s) 50, 56, 428
AhdI GACNNNNNGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 46, 314
AluI AGCT 2 cut(s) 46, 314
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 118, 196
AlwI GGATC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 121, 311
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 95, 232, 470
AvaII GGWCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 108, 323
BccI CCATC 2 cut(s) 158, 275
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 2 cut(s) 118, 196
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 3 cut(s) 122, 185, 315
BisI GCNGC 2 cut(s) 122, 312
BlsI GCNGC 2 cut(s) 123, 313
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 439
BmeRI GACNNNNNGTC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 394, 421
BoxI GACNNNNGTC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 448
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 2 cut(s) 264, 534
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 146, 448
BseMI GCAATG 2 cut(s) 264, 534
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 2 cut(s) 108, 323
BsgI GTGCAG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 146, 448
BsmAI GTCTC 2 cut(s) 118, 196
Bso31I GGTCTC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 8, 400
Bsp143I GATC 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 532
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 2 cut(s) 264, 534
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 37, 109, 189
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 2 cut(s) 118, 196
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 4 cut(s) 266, 296, 395, 404
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 3 cut(s) 122, 185, 315
BstV1I GCAGC 2 cut(s) 108, 323
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 42, 114
Cfr13I GGNCC 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 2 cut(s) 16, 359
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DriI GACNNNNNGTC 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 19, 362
FaiI YATR 7 cut(s) 17, 29, 271, 273, 308, 360, 449
FatI CATG 2 cut(s) 15, 358
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 122, 312
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 122, 312
FspBI CTAG 1 cut(s) 380
GluI GCNGC 2 cut(s) 122, 312
Hin1II CATG 2 cut(s) 19, 362
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 1 cut(s) 168
HphI GGTGA 3 cut(s) 95, 232, 470
Hpy166II GTNNAC 2 cut(s) 353, 489
Hpy188I TCNGA 4 cut(s) 10, 257, 415, 459
Hpy188III TCNNGA 3 cut(s) 178, 401, 428
Hpy8I GTNNAC 2 cut(s) 353, 489
HpyCH4III ACNGT 3 cut(s) 37, 109, 189
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 6 cut(s) 124, 269, 362, 434, 503, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 296, 395, 404
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 2 cut(s) 19, 362
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 530
LpnPI CCDG 8 cut(s) 62, 132, 191, 203, 212, 239, 350, 494
Lsp1109I GCAGC 2 cut(s) 108, 323
LweI GCATC 2 cut(s) 394, 421
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 31, 149
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MfeI CAATTG 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 8, 400
MluCI AATT 6 cut(s) 51, 69, 210, 244, 303, 444
MnlI CCTC 3 cut(s) 223, 280, 289
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 2 cut(s) 192, 243
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 4 cut(s) 266, 296, 395, 404
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 454
NlaIII CATG 2 cut(s) 19, 362
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 2 cut(s) 31, 149
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 362
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 123, 313
PshAI GACNNNNGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 1 cut(s) 439
PstI CTGCAG 1 cut(s) 126
SaqAI TTAA 2 cut(s) 192, 243
SatI GCNGC 2 cut(s) 122, 312
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 8, 400
SetI ASST 5 cut(s) 48, 316, 367, 421, 483
SfaNI GCATC 2 cut(s) 394, 421
SfcI CTRYAG 3 cut(s) 122, 185, 315
SinI GGWCC 1 cut(s) 439
Sse9I AATT 6 cut(s) 51, 69, 210, 244, 303, 444
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 37, 109, 189
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 104, 171
TaqII GACCGA 1 cut(s) 456
TasI AATT 6 cut(s) 51, 69, 210, 244, 303, 444
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 2 cut(s) 192, 243
Tru9I TTAA 2 cut(s) 192, 243
TscAI CASTG 2 cut(s) 42, 114
TseFI GTSAC 2 cut(s) 31, 149
TseI GCWGC 2 cut(s) 121, 311
Tsp45I GTSAC 2 cut(s) 31, 149
TspDTI ATGAA 3 cut(s) 331, 345, 399
TspRI CASTG 2 cut(s) 42, 114
VpaK11BI GGWCC 1 cut(s) 439
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.