RchiOBHm_Chr4g0427271

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
52555240 .. 52561039
5800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39621

Sequence Viewer

Length: 3951 bp
ATGGAAAAAAAAACTGTTTCACATGCAGCTCTAGCTGATTTTATCATTCATATATGTATATATAGAAGCTCAAGTACTGCTGTCAAAACCATGGCTGATCAGGAAAACCATATCGATGGAGATCATGATGTAATTGCAGAGCCAGGCACGGCATCAGCAGTGGCCGCAGATTCGAAGAATAATAACCAAGAGGATACAGGCAAGAGCAAGGAGGATGCAACCGGTTCAGTACCATATTACAAGCTCTTCTCCTTTGCTGATTCTATGGATTACCTGTTAATGTCTGTTGGTACGATCAGTGCTATTGGAAACGGATTATGTATGCCTCTAATGACTGTGATCATGGGAGAAGTGATTAACTCTTTCGGAGAAACTCCGAATACCAAAAAAGTGGTTGGTATAGTCTCCAAGGTAAGATCTGTCGCTAATCCCTACTCGAGACAGTACAAATACTTGCGTATATTATTCGAATTTTATTCATTAGTACGACAGGCGGCACGAATAAGAAGTTTATACTTGAAGACAATCCTAAGGCAAGATGTTGGTTTTTTCGATAAAGAAGTTACCACCGGGGAAATAGTTGGAAGAATTTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGCGAGAAAGTAGGAAGTATTATCCAGTTAGTTGCAACATTCATAGGAGGCTTTGTCATAGCATTTGCTAAGGGATGGCGTCTCACCCTTGTCATGCTGACCTCTATTCCCCCTCTTGTTTTCTCCGGTGCTGTATTGAGCTTCACTGTAAAGAGGATGACTACTCGTGGACAAGCTGCTTATTCAGTGGGAGCAACTGTGGTAGAGCAGACAATTGGTTCAATCAGAACTGTTGCATCATTTACAGGTGAGAAGCAAGCTGTAACAAAGTACAACAACTCATTAGACAAAGCTTACGAGTCTGGAGTGCAAGAAGGTTTGGCATCAGGGTTTTGTCTTGGCGCGATTGTGCTTATTGTATTCTGCAGCTATGCTTTGGCAGTATGGTATGGCGGAAAAATGATACTTGAACAAGGATATAAAGCAGGAGATGTCATGAATGTGATATTTGCAGTATTAACTGGCTCCTTCTCTCTCGGACAAGCATCTCCATGCATAAGTGCATTTTCGGCTGGACAAGCTGCAGCTTACAAGATGTTTGAGACAATTAACAGAAGGCCGGAGATAGATGCTTCTGATACTAATGGGAAGCAATTAGAAGACATCCGAGGGGAAATAGAATTTAGGGATGTTTATTTTAGTTATCCTGCAAGACCAGATGAACAAATATTCCAAGGATTCTCACTCTCAATATCTAGTGGTGCAACTGCTGCTCTGGTAGGACAGAGCGGAAGCGGTAAATCGACTATAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCAGGTGAAGTTCTTATCGATGGCATTAATCTCAAAGAGTTCCAGCTGAAATGGATCAGACAAAAAATAGGGCTTGTCAGCCAGGAACCTGTTTTGTTTACTTGCAGCATTAAAGATAATATTACCTATGGGAAGGATGGAGCAACTTTTGAAGAAATAAAGGCTGCCGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAATTACCTCAGGGTCTAGATACAATGGTTGGGGAGCATGGAACTCAGCTATCTGGGGGCCAAAAGCAGAGAGTTGCCATAGCTAGAGCAATCCTTAAGAACCCTAGAATTCTGCTTTTAGATGAAGCTACAAGTGCTCTTGATGCAGAATCTGAGAGGGTTGTGCAAGAGGCATTGGACAGAGTTATGGTTAGCCGGACTACAGTGATTGTAGCCCACCGCTTGAGCACAGTGAGGAATGCTGATACGATTGCAGTTATAAATCGCGGAAAAATTGTTGAACAAGGACCACATTCTGAACTAGTTAAGGTTCCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAACAAATTAGCAGTGTGTCAGAACAGAACTCTCAAAATGTTCAGGAAATTAGGCCATTGTCAAACTCTAGAAGAGATAGAAGTCCAAGACTTTCTCCCTTACAATCCATAAGTCGAGGATCATCTGGAAATACTAGTCCCCACTCATTCTCAATCTCACATGGTGCGCCTACTGTAATAGGTGTGCTTGAAATAGCACCAACTGAACCTCACATTCTAGCTGCATCATCAGAACTGCATCCAGAAGTCTCACTTAGCCGCCTAGCTTACCTGAACAAGCCAGAAATCCCAGTGCTAATTCTAGGTACTATAGCTGCAGCAATTAATGGCGTAATATTGCCTATTTTTGGGGTGTTAATATCCAGTATAATCAAGACATTCTTTGAGCCACCTCATCGACTTCAAAAGGATTCCAAGTTTTGGTCATTAATCTTTATTCTTCTTGGAGTGGCATCTCTCTTGGCATATCCATTGAAAGCATACTTTTTTGCTGTGGCTGGGGGCAAGTTAATAAGACGAGTTCGATCACTATGCTTTGAGAAGGTGATTCACATGGAAGTAAGTTGGTTCGATGAAGCTGAGCACTCAAGTGGTGCAATTGGTGCAAGGCTTTCTGCAGATGCTGCCTCTCTCCGAGGGCTTGTTGGAGATGCTCTAGGTTTGGCTGTTTTGAATGGATCAACTGCAATTGCTGGATTGGTTATTGCTTTTGTGGCAAATTGGCAACTTGCTCTTATAATCCTTATTCTCCTACCTCTACTAGGAATAAGTGGATATTTCCAGGTCCAGTTCCTGAAAGGATTAAGCGCTAGTGCAAAGAAAATGTATGAAGACGCAAGCCAATTAGCCACAGATGCTGTGGGGAATATTAGAACAATTGCTTCATTTTGTGCTGAAGAAAAGGTTATCAAGTTGTACCACACAAAATGTGAAGGTCCTATCAAGGCAGGGATAAGACAAGGGATAGTCAGTGGGATAGGCTTTGGACTATCGTTCTTCTTGCTCTTCTCTGTATATGCATGTAGTTTCTATGCTGGTGCTCAACTTGTAGGAGCAGGCAAGACAACATTCCCTGATGTTTTTCGGGTTTTCTTTGCTCTAACTATGACAGCTATAGCATTGTCTCACCAGGGTTCCGTTGCCCCTGATTCAATTAAAGGAAAGAGCGCTGCCGCTTCTATATTTGCACTTCTTGACCAAAAATCAAAAATAGATTCTAGTGATGACTCTGGAACAACCATTGTAAATGTGAAAGGAGAAATCCAATTTCGTCATGTTAGTTTCAGGTATCCTAATAGACCTAACGTGCCAATCTTCCGGGATCTTTGCTTGACCATTCACCATGGCAAGACACTTGCTCTGGTGGGAGAAAGTGGAAGTGGAAAATCGACAGTGATCTCATTGCTTCAGAGATTTTATGACCCTGATTCAGGTCATATTACATTAGATAGTGTTGAAATGAAAACTTTACAGTTGAAGTGGCTGAGACAGCAAATGGGGTTGGTGAGCCAGGAGCCTCTATTGTTTAATGACACTATAAGAGCCAACATTGCATATGGAAAGGAAGGGATTGCAACCGAGGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGTCCACAAGTTCATTAGTAGTTTACAACAGGGTTATGATACAATAGTGGGCGAGCGAGGGGTTCAACTGTCTGGTGGACAGAAGCAAAGGGTGGCTATTGCAAGAGCGATAATGAAGGCACCAAAGATATTACTACTAGATGAAGCCACTAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTAGATCGAGTTATGTTGGATAGAACCACAGTTGTGGTTGCGCATCGTTTATCCACGATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTAATTGCAGAGAAAGGTAAGCATGAATCTTTGATCAATATCAAGGGTGGCACTTATGCTTCTTTGGCAGCATTACATGCAAGTGCCTCATCTTAG

Protein Analysis

1316

Amino Acids

141.9

Weight (kDa)

8.52

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 96 - 365 2.8e-50 ABC transporter transmembrane region
ABC_tran PF00005 433 - 581 1.3e-33 ABC transporter
ABC_membrane PF00664 750 - 1022 3.3e-61 ABC transporter transmembrane region
ABC_tran PF00005 1091 - 1240 8.6e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1868, 1946, 2690
AarI CACCTGC 1 cut(s) 1400
Acc16I TGCGCA 1 cut(s) 3801
Acc36I ACCTGC 1 cut(s) 1400
AccB1I GGYRCC 1 cut(s) 3685
AccB7I CCANNNNNTGG 1 cut(s) 2373
AccBSI CCGCTC 1 cut(s) 1353
AccII CGCG 2 cut(s) 968, 1875
AclWI GGATC 4 cut(s) 1469, 2080, 2638, 3282
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 5 cut(s) 470, 588, 1244, 1598, 1716
AcuI CTGAAG 2 cut(s) 2868, 3344
AcyI GRCGYC 1 cut(s) 703
AdeI CACNNNGTG 1 cut(s) 2117
AfaI GTAC 8 cut(s) 76, 231, 292, 446, 486, 896, 2260, 2870
AfeI AGCGCT 2 cut(s) 2761, 3121
AfiI CCNNNNNNNGG 5 cut(s) 1409, 2300, 2373, 2714, 3383
AflII CTTAAG 1 cut(s) 1703
AgeI ACCGGT 1 cut(s) 221
AhlI ACTAGT 3 cut(s) 1909, 2087, 3716
AjnI CCWGG 5 cut(s) 142, 1488, 2733, 3081, 3462
AleI CACNNNNGTG 2 cut(s) 2541, 3791
AloI GAACNNNNNNTCC 2 cut(s) 1278, 1310
Alw21I GWGCWC 6 cut(s) 609, 1747, 1838, 2538, 2995, 3724
Alw26I GTCTC 7 cut(s) 409, 433, 710, 1160, 2206, 3081, 3433
AlwI GGATC 4 cut(s) 1469, 2080, 2638, 3282
AlwNI CAGNNNCTG 4 cut(s) 1760, 2576, 2746, 2810
Ama87I CYCGRG 1 cut(s) 436
Aor51HI AGCGCT 2 cut(s) 2761, 3121
AoxI GGCC 5 cut(s) 162, 618, 1181, 1666, 2006
ApoI RAATTY 5 cut(s) 470, 588, 1244, 1598, 1716
AseI ATTAAT 3 cut(s) 1434, 2277, 2381
AsiGI ACCGGT 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 589
AspLEI GCGC 5 cut(s) 968, 2122, 2762, 3122, 3802
AspS9I GGNCC 4 cut(s) 1666, 1895, 2737, 2888
AsuC2I CCSGG 2 cut(s) 571, 3272
AsuHPI GGTGA 9 cut(s) 608, 700, 884, 1424, 2509, 3071, 3284, 3469, 3856
AsuII TTCGAA 2 cut(s) 173, 468
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 3 cut(s) 1895, 2737, 2888
AxyI CCTNAGG 2 cut(s) 530, 1617
BaeI ACNNNNGTAYC 4 cut(s) 1620, 1653, 3597, 3630
BanI GGYRCC 1 cut(s) 3685
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BauI CACGAG 1 cut(s) 789
BbsI GAAGAC 3 cut(s) 527, 1230, 2790
Bbv12I GWGCWC 6 cut(s) 609, 1747, 1838, 2538, 2995, 3724
BccI CCATC 5 cut(s) 110, 693, 1421, 1538, 1919
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 2466, 2500
BciT130I CCWGG 5 cut(s) 144, 1490, 2735, 3083, 3464
BciVI GTATCC 2 cut(s) 187, 3252
BclI TGATCA 3 cut(s) 97, 339, 3888
BcnI CCSGG 2 cut(s) 571, 3272
BcoDI GTCTC 7 cut(s) 409, 433, 710, 1160, 2206, 3081, 3433
BcuI ACTAGT 3 cut(s) 1909, 2087, 3716
BfmI CTRYAG 8 cut(s) 988, 1146, 1809, 2262, 2268, 2568, 3066, 3549
BfoI RGCGCY 2 cut(s) 2763, 3123
BfrI CTTAAG 1 cut(s) 1703
BfuAI ACCTGC 1 cut(s) 1400
BfuI GTATCC 2 cut(s) 187, 3252
BglII AGATCT 1 cut(s) 416
BlpI GCTNAGC 2 cut(s) 1578, 2532
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 7 cut(s) 144, 571, 1490, 2735, 3083, 3272, 3464
Bme18I GGWCC 3 cut(s) 1895, 2737, 2888
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 4 cut(s) 1666, 1895, 2737, 2888
BmiI GGNNCC 7 cut(s) 1090, 1494, 1667, 1920, 3088, 3468, 3687
BmrFI CCNGG 7 cut(s) 144, 571, 1490, 2735, 3083, 3272, 3464
BmrI ACTGGG 1 cut(s) 2237
BmuI ACTGGG 1 cut(s) 2237
BpiI GAAGAC 3 cut(s) 527, 1230, 2790
BpmI CTGGAG 1 cut(s) 948
Bpu10I CCTNAGC 1 cut(s) 693
Bpu1102I GCTNAGC 2 cut(s) 1578, 2532
Bpu14I TTCGAA 2 cut(s) 173, 468
BpuEI CTTGAG 3 cut(s) 55, 1852, 2524
BpuMI CCSGG 2 cut(s) 571, 3272
Bsa29I ATCGAT 2 cut(s) 114, 1425
BsaBI GATNNNNATC 2 cut(s) 120, 3893
BsaHI GRCGYC 1 cut(s) 703
BsaWI WCCGGW 2 cut(s) 221, 749
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 807, 837
Bsc4I CCNNNNNNNGG 5 cut(s) 1409, 2300, 2373, 2714, 3383
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 5 cut(s) 649, 1090, 2243, 2316, 2740
Bse21I CCTNAGG 2 cut(s) 530, 1617
Bse3DI GCAATG 2 cut(s) 3353, 3501
Bse8I GATNNNNATC 2 cut(s) 120, 3893
BseBI CCWGG 5 cut(s) 144, 1490, 2735, 3083, 3464
BseCI ATCGAT 2 cut(s) 114, 1425
BseGI GGATG 7 cut(s) 220, 704, 786, 1227, 1258, 1549, 2191
BseJI GATNNNNATC 2 cut(s) 120, 3893
BseLI CCNNNNNNNGG 5 cut(s) 1409, 2300, 2373, 2714, 3383
BseMI GCAATG 2 cut(s) 3353, 3501
BseMII CTCAG 6 cut(s) 1569, 1631, 1667, 1752, 2523, 3428
BseNI ACTGG 5 cut(s) 649, 1090, 2243, 2316, 2740
BseYI CCCAGC 1 cut(s) 2450
BsgI GTGCAG 1 cut(s) 3846
Bsh1236I CGCG 2 cut(s) 968, 1875
BshFI GGCC 5 cut(s) 164, 620, 1183, 1668, 2008
BshNI GGYRCC 1 cut(s) 3685
BshTI ACCGGT 1 cut(s) 221
BshVI ATCGAT 2 cut(s) 114, 1425
BsiHKAI GWGCWC 6 cut(s) 609, 1747, 1838, 2538, 2995, 3724
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 6 cut(s) 222, 570, 750, 1184, 1804, 3271
BslFI GGGAC 1 cut(s) 2076
BslI CCNNNNNNNGG 5 cut(s) 1409, 2300, 2373, 2714, 3383
BsmAI GTCTC 7 cut(s) 409, 433, 710, 1160, 2206, 3081, 3433
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 1 cut(s) 2076
BsmI GAATGC 1 cut(s) 1852
BsnI GGCC 5 cut(s) 164, 620, 1183, 1668, 2008
BsoBI CYCGRG 1 cut(s) 436
Bsp119I TTCGAA 2 cut(s) 173, 468
Bsp1286I GDGCHC 6 cut(s) 609, 1747, 1838, 2538, 2995, 3724
Bsp1720I GCTNAGC 2 cut(s) 1578, 2532
Bsp19I CCATGG 3 cut(s) 90, 621, 3295
BspANI GGCC 5 cut(s) 164, 620, 1183, 1668, 2008
BspCNI CTCAG 6 cut(s) 1570, 1630, 1666, 1753, 2524, 3429
BspDI ATCGAT 2 cut(s) 114, 1425
BspFNI CGCG 2 cut(s) 968, 1875
BspHI TCATGA 2 cut(s) 124, 1059
BspLI GGNNCC 7 cut(s) 1090, 1494, 1667, 1920, 3088, 3468, 3687
BspMAI CTGCAG 5 cut(s) 992, 1150, 2272, 2572, 3553
BspMI ACCTGC 1 cut(s) 1400
BspPI GGATC 4 cut(s) 1469, 2080, 2638, 3282
BspQI GCTCTTC 2 cut(s) 251, 2963
BspT104I TTCGAA 2 cut(s) 173, 468
BspT107I GGYRCC 1 cut(s) 3685
BspTI CTTAAG 1 cut(s) 1703
BsrBI CCGCTC 1 cut(s) 1353
BsrDI GCAATG 2 cut(s) 3353, 3501
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 5 cut(s) 649, 1090, 2243, 2316, 2740
BssAI RCCGGY 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 703
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 5 cut(s) 90, 408, 621, 1297, 3295
Bst2BI CACGAG 1 cut(s) 789
Bst2UI CCWGG 5 cut(s) 144, 1490, 2735, 3083, 3464
Bst6I CTCTTC 3 cut(s) 251, 2020, 2963
BstACI GRCGYC 1 cut(s) 703
BstAFI CTTAAG 1 cut(s) 1703
BstAPI GCANNNNNTGC 4 cut(s) 1334, 2555, 2576, 3932
BstBI TTCGAA 2 cut(s) 173, 468
BstC8I GCNNGC 6 cut(s) 882, 1584, 1940, 2791, 3010, 3620
BstDSI CCRYGG 3 cut(s) 90, 621, 3295
BstENI CCTNNNNNAGG 2 cut(s) 2712, 3381
BstF5I GGATG 7 cut(s) 220, 704, 786, 1227, 1258, 1549, 2191
BstFNI CGCG 2 cut(s) 968, 1875
BstH2I RGCGCY 2 cut(s) 2763, 3123
BstHHI GCGC 5 cut(s) 968, 2122, 2762, 3122, 3802
BstMAI GTCTC 7 cut(s) 409, 433, 710, 1160, 2206, 3081, 3433
BstNI CCWGG 5 cut(s) 144, 1490, 2735, 3083, 3464
BstNSI RCATGY 3 cut(s) 26, 2976, 3935
BstSCI CCNGG 7 cut(s) 142, 569, 1488, 2733, 3081, 3270, 3462
BstSFI CTRYAG 8 cut(s) 988, 1146, 1809, 2262, 2268, 2568, 3066, 3549
BstUI CGCG 2 cut(s) 968, 1875
BstV2I GAAGAC 3 cut(s) 527, 1230, 2790
BstX2I RGATCY 2 cut(s) 416, 3274
BstXI CCANNNNNNTGG 3 cut(s) 116, 391, 3793
BstYI RGATCY 2 cut(s) 416, 3274
Bsu15I ATCGAT 2 cut(s) 114, 1425
Bsu36I CCTNAGG 2 cut(s) 530, 1617
BsuI GTATCC 2 cut(s) 187, 3252
BsuRI GGCC 5 cut(s) 164, 620, 1183, 1668, 2008
BsuTUI ATCGAT 2 cut(s) 114, 1425
BtgI CCRYGG 3 cut(s) 90, 621, 3295
BtsCI GGATG 7 cut(s) 220, 704, 786, 1227, 1258, 1549, 2191
BtsI GCAGTG 3 cut(s) 165, 1972, 3846
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 6 cut(s) 882, 1584, 1940, 2791, 3010, 3620
CaiI CAGNNNCTG 4 cut(s) 1760, 2576, 2746, 2810
CciI TCATGA 2 cut(s) 124, 1059
CfoI GCGC 5 cut(s) 968, 2122, 2762, 3122, 3802
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 4 cut(s) 1666, 1895, 2737, 2888
ClaI ATCGAT 2 cut(s) 114, 1425
CseI GACGC 2 cut(s) 692, 2795
Csp6I GTAC 8 cut(s) 75, 230, 291, 445, 485, 895, 2259, 2869
CspAI ACCGGT 1 cut(s) 221
CviQI GTAC 8 cut(s) 75, 230, 291, 445, 485, 895, 2259, 2869
DraIII CACNNNGTG 1 cut(s) 2117
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 3 cut(s) 251, 2020, 2963
EarI CTCTTC 3 cut(s) 251, 2020, 2963
EciI GGCGGA 1 cut(s) 1032
Eco130I CCWWGG 5 cut(s) 90, 408, 621, 1297, 3295
Eco47I GGWCC 3 cut(s) 1895, 2737, 2888
Eco47III AGCGCT 2 cut(s) 2761, 3121
Eco57I CTGAAG 2 cut(s) 2868, 3344
Eco81I CCTNAGG 2 cut(s) 530, 1617
Eco88I CYCGRG 1 cut(s) 436
EcoNI CCTNNNNNAGG 2 cut(s) 2712, 3381
EcoO109I RGGNCCY 1 cut(s) 2888
EcoRI GAATTC 1 cut(s) 1716
EcoRII CCWGG 5 cut(s) 142, 1488, 2733, 3081, 3462
EcoT14I CCWWGG 5 cut(s) 90, 408, 621, 1297, 3295
EcoT22I ATGCAT 2 cut(s) 1121, 2974
ErhI CCWWGG 5 cut(s) 90, 408, 621, 1297, 3295
Esp3I CGTCTC 1 cut(s) 710
FalI AAGNNNNNCTT 4 cut(s) 2190, 2222, 2318, 2350
FaqI GGGAC 1 cut(s) 2076
FauNDI CATATG 1 cut(s) 3508
FbaI TGATCA 3 cut(s) 97, 339, 3888
FokI GGATG 7 cut(s) 227, 711, 793, 1214, 1265, 1556, 2178
FspI TGCGCA 1 cut(s) 3801
GlaI GCGC 5 cut(s) 967, 2121, 2761, 3121, 3801
GsaI CCCAGC 1 cut(s) 2454
GsuI CTGGAG 1 cut(s) 948
HaeII RGCGCY 2 cut(s) 2763, 3123
HaeIII GGCC 5 cut(s) 164, 620, 1183, 1668, 2008
HapII CCGG 6 cut(s) 222, 570, 750, 1184, 1804, 3271
HgaI GACGC 2 cut(s) 692, 2795
HhaI GCGC 5 cut(s) 968, 2122, 2762, 3122, 3802
Hin1I GRCGYC 1 cut(s) 703
Hin6I GCGC 5 cut(s) 966, 2120, 2760, 3120, 3800
HinP1I GCGC 5 cut(s) 966, 2120, 2760, 3120, 3800
HindIII AAGCTT 1 cut(s) 915
HpaII CCGG 6 cut(s) 222, 570, 750, 1184, 1804, 3271
HphI GGTGA 9 cut(s) 608, 700, 884, 1424, 2509, 3071, 3284, 3469, 3856
Hpy166II GTNNAC 5 cut(s) 794, 1506, 3571, 3590, 3644
Hpy8I GTNNAC 5 cut(s) 794, 1506, 3571, 3590, 3644
HpyAV CCTTC 8 cut(s) 932, 1102, 1173, 1534, 2488, 2879, 3512, 3676
HpyCH4IV ACGT 1 cut(s) 3258
HpySE526I ACGT 1 cut(s) 3258
Hsp92I GRCGYC 1 cut(s) 703
HspAI GCGC 5 cut(s) 966, 2120, 2760, 3120, 3800
Ksp22I TGATCA 3 cut(s) 97, 339, 3888
LguI GCTCTTC 2 cut(s) 251, 2963
LmnI GCTCC 7 cut(s) 815, 1094, 1547, 1642, 1928, 3005, 3466
MaeII ACGT 1 cut(s) 3258
MaeIII GTNAC 2 cut(s) 562, 886
MbiI CCGCTC 1 cut(s) 1353
MfeI CAATTG 4 cut(s) 837, 2550, 2640, 2829
MflI RGATCY 2 cut(s) 416, 3274
MhlI GDGCHC 6 cut(s) 609, 1747, 1838, 2538, 2995, 3724
MlyI GAGTC 2 cut(s) 932, 3173
MmeI TCCRAC 3 cut(s) 562, 2578, 3756
Mph1103I ATGCAT 2 cut(s) 1121, 2974
MroXI GAANNNNTTC 1 cut(s) 589
MslI CAYNNNNRTG 6 cut(s) 114, 1064, 1114, 2541, 3791, 3936
MspA1I CMGCKG 2 cut(s) 1453, 1577
MspCI CTTAAG 1 cut(s) 1703
MspI CCGG 6 cut(s) 222, 570, 750, 1184, 1804, 3271
MspR9I CCNGG 7 cut(s) 144, 571, 1490, 2735, 3083, 3272, 3464
MunI CAATTG 4 cut(s) 837, 2550, 2640, 2829
Mva1269I GAATGC 1 cut(s) 1852
MvaI CCWGG 5 cut(s) 144, 1490, 2735, 3083, 3464
MvnI CGCG 2 cut(s) 968, 1875
NciI CCSGG 2 cut(s) 571, 3272
NcoI CCATGG 3 cut(s) 90, 621, 3295
NdeI CATATG 1 cut(s) 3508
NlaIV GGNNCC 7 cut(s) 1090, 1494, 1667, 1920, 3088, 3468, 3687
NsbI TGCGCA 1 cut(s) 3801
NsiI ATGCAT 2 cut(s) 1121, 2974
NspI RCATGY 3 cut(s) 26, 2976, 3935
NspV TTCGAA 2 cut(s) 173, 468
OliI CACNNNNGTG 2 cut(s) 2541, 3791
PaeR7I CTCGAG 1 cut(s) 436
PagI TCATGA 2 cut(s) 124, 1059
PaqCI CACCTGC 1 cut(s) 1400
PciSI GCTCTTC 2 cut(s) 251, 2963
PctI GAATGC 1 cut(s) 1852
PdmI GAANNNNTTC 1 cut(s) 589
PflMI CCANNNNNTGG 1 cut(s) 2373
PfoI TCCNGGA 1 cut(s) 3270
PinAI ACCGGT 1 cut(s) 221
PleI GAGTC 2 cut(s) 931, 3173
PpsI GAGTC 2 cut(s) 931, 3173
PpuMI RGGWCCY 1 cut(s) 2888
PshBI ATTAAT 3 cut(s) 1434, 2277, 2381
PsiI TTATAA 3 cut(s) 1868, 1946, 2690
Psp5II RGGWCCY 1 cut(s) 2888
Psp6I CCWGG 5 cut(s) 142, 1488, 2733, 3081, 3462
PspFI CCCAGC 1 cut(s) 2450
PspGI CCWGG 5 cut(s) 142, 1488, 2733, 3081, 3462
PspN4I GGNNCC 7 cut(s) 1090, 1494, 1667, 1920, 3088, 3468, 3687
PspPI GGNCC 4 cut(s) 1666, 1895, 2737, 2888
PspPPI RGGWCCY 1 cut(s) 2888
PstI CTGCAG 5 cut(s) 992, 1150, 2272, 2572, 3553
PstNI CAGNNNCTG 4 cut(s) 1760, 2576, 2746, 2810
PsuI RGATCY 2 cut(s) 416, 3274
PvuII CAGCTG 1 cut(s) 1453
RsaI GTAC 8 cut(s) 76, 231, 292, 446, 486, 896, 2260, 2870
RsaNI GTAC 8 cut(s) 75, 230, 291, 445, 485, 895, 2259, 2869
RseI CAYNNNNRTG 6 cut(s) 114, 1064, 1114, 2541, 3791, 3936
SapI GCTCTTC 2 cut(s) 251, 2963
Sau96I GGNCC 4 cut(s) 1666, 1895, 2737, 2888
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 2 cut(s) 932, 3173
ScrFI CCNGG 7 cut(s) 144, 571, 1490, 2735, 3083, 3272, 3464
SduI GDGCHC 6 cut(s) 609, 1747, 1838, 2538, 2995, 3724
SfcI CTRYAG 8 cut(s) 988, 1146, 1809, 2262, 2268, 2568, 3066, 3549
Sfr274I CTCGAG 1 cut(s) 436
SfuI TTCGAA 2 cut(s) 173, 468
SinI GGWCC 3 cut(s) 1895, 2737, 2888
SlaI CTCGAG 1 cut(s) 436
SmiMI CAYNNNNRTG 6 cut(s) 114, 1064, 1114, 2541, 3791, 3936
SmlI CTYRAG 5 cut(s) 70, 436, 1703, 1831, 2539
SmoI CTYRAG 5 cut(s) 70, 436, 1703, 1831, 2539
SpeI ACTAGT 3 cut(s) 1909, 2087, 3716
SspI AATATT 4 cut(s) 1293, 1528, 2289, 2821
StyD4I CCNGG 7 cut(s) 142, 569, 1488, 2733, 3081, 3270, 3462
StyI CCWWGG 5 cut(s) 90, 408, 621, 1297, 3295
TaiI ACGT 1 cut(s) 3261
TatI WGTACW 3 cut(s) 74, 444, 894
TauI GCSGC 5 cut(s) 167, 497, 1577, 2214, 3128
TspGWI ACGGA 2 cut(s) 327, 3079
Van91I CCANNNNNTGG 1 cut(s) 2373
Vha464I CTTAAG 1 cut(s) 1703
VpaK11BI GGWCC 3 cut(s) 1895, 2737, 2888
VspI ATTAAT 3 cut(s) 1434, 2277, 2381
XagI CCTNNNNNAGG 2 cut(s) 2712, 3381
XapI RAATTY 5 cut(s) 470, 588, 1244, 1598, 1716
XbaI TCTAGA 2 cut(s) 1624, 2021
XceI RCATGY 3 cut(s) 26, 2976, 3935
XcmI CCANNNNNNNNNTGG 1 cut(s) 2809
XhoI CTCGAG 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 589
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 2 cut(s) 1121, 2974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.