RLG00000025948

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
49397660 .. 49402921
5262 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025948

Sequence Viewer

Length: 3858 bp
ATGGCAGAGAAAAATGGCTTGCGTGGCAATACAAATATGGATGAAGATGAAGCACCACCATCAGAAAGCAAAGCGGAAAAAGCAAACAGAAGCTGTAGCATCACTAAGATACAGGAAGACTCAAAGAAGAAGACCAAAGGAAATGAGACCGTTCCATTTCTCAAGCTGTTTTCGTTTGCAGATTCAACTGATATCTTATTGATGACCATCGGCACAGTTGGTGCCATTGGGAATGGTTTGTGCATGCCCATTATGACTATACTCTTTGGCCAACTGACTGATTCTTTTGGATATAACTACAATAGCAAAGACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTGTACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACCGGAGAGGTTGTTGGGAGAATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGGTTGGAAAGTTTTTACAACTAATATCGACATTCATTGGAGGCATTGTCATAGCATTCATCAGAGGGTGGCTTCTAACCCTCGTCCTGATGTCCACTATTCCATTTCTTGTGGCAGCCGGAGCAATAATGTCCATTATCATAGTCAAAATGGCTTCCCGAGGACAAAATGCCTATGCGAAAGCTGCAACTGTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCATCATTTACCGGAGAGACACAAGCTATAACCAACTATAAGAAATATCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTGGGTTTTGGCATGTTTATGTTGGTAATGTTATCCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGGTATTGCAACGAGGATATAAAGGAGGAGCTGTGGTCAATGTGATTGTTGCTGTGCTGGCTGGTTCCATGTCTCTAGGCCAGGTATCTCCCTGTATGAGTGCATTTGCTGCCGGTCAGGCTGCAGCCTTTAAGATGTTTGAGACTATAAAGAGGAAACCAGAGATAGATGCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGACATAGAGCTGAGGGATATTTACTTCAGTTATCCAACCAGACCGAACGAACAAATATTCCATGGATTGACTCTGAGTATCCCTAGTGGCACAACTACAGCTTTGGTTGGGCAAAGTGGAAGCGGAAAGTCGACAGTGATCTGCCTGATAGAGAGATTCTATGATCCATGGGCTGGTGAGGTTCTCGTAGATGGTATCAACCTCAAAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTAGTCAGCCAGGAACCGGTGTTGTTTGCATCGAGCATCCGGGACAATATTTTATATGGAAAGGATGGTGCAACTTCTGAAGAGATAAGAGCAGCATTAGTACTTGCAAATGCTGCTAAGTTTATTGACAAATTGCCTCAGGGACTGGACACCATGGTTGGGGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGAGGATTGCCATAGCTCGTGCAGTTCTTAAAGACCCACGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACTGAGCTAATTGTACAAGAGGCATTGGACCGAATTATGGTCAATCGAACTACTCTCATTGTTGCTCATCGTTTGAGCACGGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGGTTGAGAAAGGTCCACACTCGGAACTAGTTAGGAATCCTAATGGAGCCTACTCTCAGCTTATACACTTACAAGAGTTAAGTGAAGACACAGAACAAGCTGCAGACCATCAAACAACGTCAGAAATCAGTAAAAAAAAATCATTGCAAAGATCCTTAAGTCATGATTCATCCGGAGCAGGAAGTAGCAGCCGTCACTCATTCAAACTACCATTCGGATTTCCCACAGGACTTGAGGTAGTAGATATTGTTACAAAAGAACCAGAATCCCTTACAACAACTATGCAACAATTTCCAAAGGCTCCCATCCGCCGCCTTGCCTACCTTAACAAGCCAGAGATTCCAGTGCTAGTAATTGGAGCTACAGCTGCAATAGCCAATGGTGTGATATTTCCAGTTGTTGGTCTAATAATTTCCAGTGCCATCAAAACATTATATGAACCACCTCATCAACTCAAAAAGGATTCTAAGTTTTGGGCACTAATGTATGTGACCCTTGGTTTGGCTTCCTTACTGGTGATTCCGGTAAGATCATACTTCTTTTCTGTGGCTGGATGCAAGCTAATTGAACGTATAAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGATTGGTTGGTTTGATGAGCCTCGGAGTGGCGAAATTGGTGCAAAGCTCTCGGCAAATGCAGCCACAGTGCGCTCCCTAGTTGGTGATGCACTTGCTCAGCTGATTGGAAATATTGCATCGGCAGTTGCCGGTTTAGTGATTGCTTTTGTTGCGTGTTGGCAGCTGGCATTTATTGTCCTGGTATTGTTCCCTCTTATTGGTGTCACAGGATATATGGAATTAAAATTTATAAAAGGGTTCAGCGCAGATTCAAAGATGATGTATGAGGAAGCAAGCCAGGTTGCTACCGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGCGCCGAAGAGAAGGTGGTGCAACAATACAACACAAAATGTGAAGGCCCTATGAGGACAGGGATAAGGCAAGGCATTATCAGTGGCATGGGATTTGGATTATCGTTCTTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTATGCAGGAGCTCAACTTGTGGTGCATGGCAAAACAACATTCTTAGATGTTTTTCGGGTTTTCTTTTCTCTAACTATGGCTGCTATGACGATTTCTCAATCGAGTTCCTTAGCTCCTGATTCATCTAAAGCCAATGCCGCTACTGCTTCTATCTTTGCCATAATAGACCAGGAGTCAAAGATTGATCCGAGTGATGAGTCTGGGATGACAATGGACAATGTAAAGGGAGAAATTGAGCTTCGTAATGTATGCTTCAGATATCCGTCCAGGCCAGACGTTCAGATTTTTCAAGACCTCAACCTAGTTTTTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACCGTGATCTCACTGTTGCAAAGATTTTATGATCCTAACTCGGGTCACATTACTCTCGATGGTGTTGAAATTTGGAAGTTCCAATTGAAGTGGCTGAGGCAGCAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATCCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCAACAGAAGCTGAAATTCTGGCTGCATCCGAGTCTGCCAATGCCCACAAGTTCATTAGTGGCTTGCAAGAGGGCTATGACACCCTAGTGGGCGAACGAGGAGTCCAATTGTCAGGTGGACAGAAGCAACGTGTAGCGATTGCGCGTGCTATTGTAAAAAGCCCCAAGATCTTACTACTAGATGAGGCTACCAGTGCACTAGATGCTGAATCTGAGAGAGTAGTACAAGATGCATTAGACCTTGTCATGCTGAATCGGACAACAGTTGTGGTGGCACATAGATTATCTACAATCAGAAATGCAAACGTAATTGCAGTTGTCAGAGACGGAGCTGTAGTAGAGAAAGGAAAGCATGAGACTTTGATTAGCATCAAGGATGGTTTCTATGCCTCCTTAGTTGCATTACACAATACACATCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

1286

Amino Acids

139.35

Weight (kDa)

7.58

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 69 - 341 1.1e-57 ABC transporter transmembrane region
ABC_tran PF00005 410 - 558 1.9e-31 ABC transporter
ABC_membrane PF00664 722 - 992 3.3e-52 ABC transporter transmembrane region
ABC_tran PF00005 1060 - 1209 1.1e-32 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2654
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 2 cut(s) 1340, 2213
AccI GTMKAC 3 cut(s) 351, 1298, 2874
AccII CGCG 1 cut(s) 3577
AccIII TCCGGA 1 cut(s) 1985
AciI CCGC 5 cut(s) 74, 1290, 2122, 2125, 3027
AclWI GGATC 6 cut(s) 1325, 1400, 1959, 3068, 3275, 3361
AcoI YGGCCR 2 cut(s) 268, 405
AcsI RAATTY 3 cut(s) 2648, 3318, 3447
AcuI CTGAAG 3 cut(s) 1177, 1509, 3127
AfaI GTAC 4 cut(s) 446, 1512, 1704, 3657
AflII CTTAAG 1 cut(s) 1969
AflIII ACRYGT 1 cut(s) 3562
AgeI ACCGGT 1 cut(s) 1426
AgsI TTSAA 8 cut(s) 186, 761, 2017, 2381, 2676, 3179, 3317, 3337
AhdI GACNNNNNGTC 1 cut(s) 3061
AhlI ACTAGT 1 cut(s) 1840
AjnI CCWGG 8 cut(s) 354, 387, 1035, 1419, 2601, 2700, 3057, 3155
AleI CACNNNNGTG 2 cut(s) 2408, 3518
AloI GAACNNNNNNTCC 4 cut(s) 1209, 1241, 3519, 3551
Alw21I GWGCWC 4 cut(s) 1678, 1769, 2902, 3631
Alw26I GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3750, 3782
Alw44I GTGCAC 2 cut(s) 1674, 3627
AlwI GGATC 6 cut(s) 1325, 1400, 1959, 3068, 3275, 3361
AlwNI CAGNNNCTG 4 cut(s) 93, 1555, 1691, 3443
Ama87I CYCGRG 2 cut(s) 720, 3289
Aor13HI TCCGGA 1 cut(s) 1985
AoxI GGCC 5 cut(s) 268, 405, 1033, 2794, 3158
ApaLI GTGCAC 2 cut(s) 1674, 3627
ApoI RAATTY 3 cut(s) 2648, 3318, 3447
ArsI GACNNNNNNTTYG 4 cut(s) 2296, 2328, 3519, 3551
AsiGI ACCGGT 1 cut(s) 1426
AspLEI GCGC 4 cut(s) 2496, 2669, 2753, 3577
AspS9I GGNCC 3 cut(s) 1717, 1826, 2795
AsuC2I CCSGG 1 cut(s) 1451
AsuHPI GGTGA 6 cut(s) 539, 1178, 1355, 1783, 2341, 2519
AvaI CYCGRG 2 cut(s) 720, 3289
AvaII GGWCC 2 cut(s) 1717, 1826
AxyI CCTNAGG 1 cut(s) 1548
BaeGI GKGCMC 3 cut(s) 1678, 2293, 3631
BalI TGGCCA 2 cut(s) 270, 407
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 2902
BauI CACGAG 1 cut(s) 1623
BbsI GAAGAC 3 cut(s) 123, 137, 1905
Bbv12I GWGCWC 4 cut(s) 1678, 1769, 2902, 3631
BbvCI CCTCAGC 2 cut(s) 1178, 3344
BceAI ACGGC 1 cut(s) 1989
BcgI CGANNNNNNTGC 4 cut(s) 2444, 2454, 2478, 2488
BciT130I CCWGG 8 cut(s) 356, 389, 1037, 1421, 2603, 2702, 3059, 3157
BciVI GTATCC 1 cut(s) 1256
BcnI CCSGG 1 cut(s) 1451
BcoDI GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3750, 3782
BcuI ACTAGT 1 cut(s) 1840
BfmI CTRYAG 7 cut(s) 94, 753, 1077, 1263, 1914, 2175, 3765
BfrI CTTAAG 1 cut(s) 1969
BfuI GTATCC 1 cut(s) 1256
BglI GCCNNNNNGGC 1 cut(s) 1073
BglII AGATCT 1 cut(s) 3600
BlpI GCTNAGC 1 cut(s) 2520
BmcAI AGTACT 1 cut(s) 1512
Bme1390I CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2603, 2702, 3059, 3157
Bme18I GGWCC 2 cut(s) 1717, 1826
BmeRI GACNNNNNGTC 1 cut(s) 3061
BmeT110I CYCGRG 2 cut(s) 720, 3289
BmgT120I GGNCC 3 cut(s) 1717, 1826, 2795
BmiI GGNNCC 5 cut(s) 223, 1021, 1425, 1861, 2115
BmrFI CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2603, 2702, 3059, 3157
BpiI GAAGAC 3 cut(s) 123, 137, 1905
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 3 cut(s) 1178, 2998, 3344
Bpu1102I GCTNAGC 1 cut(s) 2520
BpuEI CTTGAG 2 cut(s) 146, 2066
BpuMI CCSGG 1 cut(s) 1451
BsaBI GATNNNNATC 2 cut(s) 206, 3800
BsaI GGTCTC 2 cut(s) 140, 340
BsaJI CCNNGG 8 cut(s) 330, 721, 1228, 1334, 1563, 2308, 2444, 3219
BsaWI WCCGGW 5 cut(s) 500, 800, 1426, 1985, 2335
Bse118I RCCGGY 3 cut(s) 1067, 1426, 2552
Bse1I ACTGG 9 cut(s) 921, 1560, 1683, 2156, 2207, 2229, 2331, 3377, 3624
Bse21I CCTNAGG 1 cut(s) 1548
Bse3DI GCAATG 4 cut(s) 558, 1788, 1955, 3408
Bse8I GATNNNNATC 2 cut(s) 206, 3800
BseAI TCCGGA 1 cut(s) 1985
BseBI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2603, 2702, 3059, 3157
BseDI CCNNGG 8 cut(s) 330, 721, 1228, 1334, 1563, 2308, 2444, 3219
BseJI GATNNNNATC 2 cut(s) 206, 3800
BseMI GCAATG 4 cut(s) 558, 1788, 1955, 3408
BseMII CTCAG 9 cut(s) 1169, 1232, 1562, 1598, 1683, 1883, 2534, 3335, 3636
BseNI ACTGG 9 cut(s) 921, 1560, 1683, 2156, 2207, 2229, 2331, 3377, 3624
BseRI GAGGAG 2 cut(s) 996, 3546
BseSI GKGCMC 3 cut(s) 1678, 2293, 3631
BsgI GTGCAG 2 cut(s) 411, 1647
Bsh1236I CGCG 1 cut(s) 3577
BshFI GGCC 5 cut(s) 270, 407, 1035, 2796, 3160
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 1426
BsiHKAI GWGCWC 4 cut(s) 1678, 1769, 2902, 3631
BsiHKCI CYCGRG 2 cut(s) 720, 3289
BslFI GGGAC 3 cut(s) 1466, 1566, 3372
BsmAI GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3750, 3782
BsmBI CGTCTC 1 cut(s) 3750
BsmFI GGGAC 3 cut(s) 1466, 1566, 3372
BsmI GAATGC 3 cut(s) 380, 617, 1783
BsnI GGCC 5 cut(s) 270, 407, 1035, 2796, 3160
Bso31I GGTCTC 2 cut(s) 140, 340
BsoBI CYCGRG 2 cut(s) 720, 3289
Bsp1286I GDGCHC 5 cut(s) 1678, 1769, 2293, 2902, 3631
Bsp13I TCCGGA 1 cut(s) 1985
Bsp1407I TGTACA 1 cut(s) 1702
Bsp1720I GCTNAGC 1 cut(s) 2520
Bsp19I CCATGG 3 cut(s) 1228, 1334, 1563
BspACI CCGC 5 cut(s) 74, 1290, 2122, 2125, 3027
BspANI GGCC 5 cut(s) 270, 407, 1035, 2796, 3160
BspCNI CTCAG 9 cut(s) 1170, 1233, 1561, 1597, 1684, 1882, 2533, 3336, 3637
BspEI TCCGGA 1 cut(s) 1985
BspFNI CGCG 1 cut(s) 3577
BspHI TCATGA 2 cut(s) 865, 1975
BspLI GGNNCC 5 cut(s) 223, 1021, 1425, 1861, 2115
BspMAI CTGCAG 2 cut(s) 1081, 1918
BspPI GGATC 6 cut(s) 1325, 1400, 1959, 3068, 3275, 3361
BspT107I GGYRCC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 1969
BspTNI GGTCTC 2 cut(s) 140, 340
BsrDI GCAATG 4 cut(s) 558, 1788, 1955, 3408
BsrFI RCCGGY 3 cut(s) 1067, 1426, 2552
BsrGI TGTACA 1 cut(s) 1702
BsrI ACTGG 9 cut(s) 921, 1560, 1683, 2156, 2207, 2229, 2331, 3377, 3624
BssAI RCCGGY 3 cut(s) 1067, 1426, 2552
BssECI CCNNGG 8 cut(s) 330, 721, 1228, 1334, 1563, 2308, 2444, 3219
BssSI CACGAG 1 cut(s) 1623
BssT1I CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3219
Bst2BI CACGAG 1 cut(s) 1623
Bst2UI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2603, 2702, 3059, 3157
Bst6I CTCTTC 2 cut(s) 1485, 2751
BstAFI CTTAAG 1 cut(s) 1969
BstAPI GCANNNNNTGC 4 cut(s) 1064, 1523, 1682, 3635
BstAUI TGTACA 1 cut(s) 1702
BstDSI CCRYGG 3 cut(s) 1228, 1334, 1563
BstFNI CGCG 1 cut(s) 3577
BstHHI GCGC 4 cut(s) 2496, 2669, 2753, 3577
BstMAI GTCTC 7 cut(s) 140, 340, 800, 1032, 1091, 3750, 3782
BstNI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2603, 2702, 3059, 3157
BstNSI RCATGY 2 cut(s) 247, 901
BstSCI CCNGG 9 cut(s) 354, 387, 1035, 1419, 1449, 2601, 2700, 3057, 3155
BstSFI CTRYAG 7 cut(s) 94, 753, 1077, 1263, 1914, 2175, 3765
BstSLI GKGCMC 3 cut(s) 1678, 2293, 3631
BstUI CGCG 1 cut(s) 3577
BstV2I GAAGAC 3 cut(s) 123, 137, 1905
BstX2I RGATCY 2 cut(s) 1964, 3600
BstYI RGATCY 2 cut(s) 1964, 3600
Bsu36I CCTNAGG 1 cut(s) 1548
BsuI GTATCC 1 cut(s) 1256
BsuRI GGCC 5 cut(s) 270, 407, 1035, 2796, 3160
BtgI CCRYGG 3 cut(s) 1228, 1334, 1563
BtsIMutI CAGTG 8 cut(s) 1308, 1676, 2163, 2236, 2496, 2836, 3260, 3631
CaiI CAGNNNCTG 4 cut(s) 93, 1555, 1691, 3443
CciI TCATGA 2 cut(s) 865, 1975
CfoI GCGC 4 cut(s) 2496, 2669, 2753, 3577
Cfr10I RCCGGY 3 cut(s) 1067, 1426, 2552
Cfr13I GGNCC 3 cut(s) 1717, 1826, 2795
Csp6I GTAC 4 cut(s) 445, 1511, 1703, 3656
CspAI ACCGGT 1 cut(s) 1426
CspCI CAANNNNNGTGG 6 cut(s) 2026, 2061, 3320, 3355, 3681, 3716
CviQI GTAC 4 cut(s) 445, 1511, 1703, 3656
DriI GACNNNNNGTC 1 cut(s) 3061
EaeI YGGCCR 2 cut(s) 268, 405
Eam1104I CTCTTC 2 cut(s) 1485, 2751
Eam1105I GACNNNNNGTC 1 cut(s) 3061
EarI CTCTTC 2 cut(s) 1485, 2751
EciI GGCGGA 1 cut(s) 2111
Ecl136II GAGCTC 1 cut(s) 2900
Eco130I CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3219
Eco24I GRGCYC 1 cut(s) 2902
Eco31I GGTCTC 2 cut(s) 140, 340
Eco32I GATATC 3 cut(s) 193, 1786, 3149
Eco47I GGWCC 2 cut(s) 1717, 1826
Eco53kI GAGCTC 1 cut(s) 2900
Eco57I CTGAAG 3 cut(s) 1177, 1509, 3127
Eco81I CCTNAGG 1 cut(s) 1548
Eco88I CYCGRG 2 cut(s) 720, 3289
EcoICRI GAGCTC 1 cut(s) 2900
EcoO109I RGGNCCY 1 cut(s) 2795
EcoRII CCWGG 8 cut(s) 354, 387, 1035, 1419, 2601, 2700, 3057, 3155
EcoRV GATATC 3 cut(s) 193, 1786, 3149
EcoT14I CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3219
EcoT22I ATGCAT 1 cut(s) 3667
EcoT38I GRGCYC 1 cut(s) 2902
ErhI CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3219
Esp3I CGTCTC 1 cut(s) 3750
FaqI GGGAC 3 cut(s) 1466, 1566, 3372
FauNDI CATATG 1 cut(s) 3415
FblI GTMKAC 3 cut(s) 351, 1298, 2874
FriOI GRGCYC 1 cut(s) 2902
GlaI GCGC 4 cut(s) 2495, 2668, 2752, 3576
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 5 cut(s) 270, 407, 1035, 2796, 3160
HhaI GCGC 4 cut(s) 2496, 2669, 2753, 3577
Hin6I GCGC 4 cut(s) 2494, 2667, 2751, 3575
HinP1I GCGC 4 cut(s) 2494, 2667, 2751, 3575
HincII GTYRAC 1 cut(s) 1299
HindII GTYRAC 1 cut(s) 1299
HphI GGTGA 6 cut(s) 539, 1178, 1355, 1783, 2341, 2519
HpyAV CCTTC 5 cut(s) 556, 863, 2755, 2786, 3419
HpyCH4IV ACGT 5 cut(s) 1931, 2383, 3165, 3562, 3738
HpySE526I ACGT 5 cut(s) 1931, 2383, 3165, 3562, 3738
HspAI GCGC 4 cut(s) 2494, 2667, 2751, 3575
Kpn2I TCCGGA 1 cut(s) 1985
MaeII ACGT 5 cut(s) 1931, 2383, 3165, 3562, 3738
MaeIII GTNAC 6 cut(s) 1166, 2006, 2062, 2302, 2626, 3293
MfeI CAATTG 2 cut(s) 3332, 3539
MflI RGATCY 2 cut(s) 1964, 3600
MhlI GDGCHC 5 cut(s) 1678, 1769, 2293, 2902, 3631
MlsI TGGCCA 2 cut(s) 270, 407
MluNI TGGCCA 2 cut(s) 270, 407
MlyI GAGTC 6 cut(s) 113, 1231, 3071, 3095, 3473, 3543
MmeI TCCRAC 3 cut(s) 547, 1226, 3205
Mox20I TGGCCA 2 cut(s) 270, 407
Mph1103I ATGCAT 1 cut(s) 3667
MroI TCCGGA 1 cut(s) 1985
MscI TGGCCA 2 cut(s) 270, 407
MseI TTAA 8 cut(s) 1086, 1386, 1635, 1892, 1970, 2139, 2645, 3387
MslI CAYNNNNRTG 3 cut(s) 902, 2408, 3518
Msp20I TGGCCA 2 cut(s) 270, 407
MspA1I CMGCKG 4 cut(s) 1588, 2180, 2524, 2587
MspCI CTTAAG 1 cut(s) 1969
MspR9I CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2603, 2702, 3059, 3157
MunI CAATTG 2 cut(s) 3332, 3539
Mva1269I GAATGC 3 cut(s) 380, 617, 1783
MvaI CCWGG 8 cut(s) 356, 389, 1037, 1421, 2603, 2702, 3059, 3157
MvnI CGCG 1 cut(s) 3577
NciI CCSGG 1 cut(s) 1451
NcoI CCATGG 3 cut(s) 1228, 1334, 1563
NdeI CATATG 1 cut(s) 3415
NlaIV GGNNCC 5 cut(s) 223, 1021, 1425, 1861, 2115
NmeAIII GCCGAG 1 cut(s) 2453
NmuCI GTSAC 5 cut(s) 1166, 2006, 2302, 2626, 3293
NsiI ATGCAT 1 cut(s) 3667
NspI RCATGY 2 cut(s) 247, 901
OliI CACNNNNGTG 2 cut(s) 2408, 3518
PaeI GCATGC 1 cut(s) 247
PagI TCATGA 2 cut(s) 865, 1975
PctI GAATGC 3 cut(s) 380, 617, 1783
PflFI GACNNNGTC 1 cut(s) 3674
PflMI CCANNNNNTGG 2 cut(s) 1340, 2213
PfoI TCCNGGA 1 cut(s) 1449
PinAI ACCGGT 1 cut(s) 1426
PleI GAGTC 6 cut(s) 113, 1231, 3070, 3094, 3472, 3542
PpsI GAGTC 6 cut(s) 113, 1231, 3070, 3094, 3472, 3542
PsiI TTATAA 1 cut(s) 2654
Psp124BI GAGCTC 1 cut(s) 2902
Psp6I CCWGG 8 cut(s) 354, 387, 1035, 1419, 2601, 2700, 3057, 3155
PspGI CCWGG 8 cut(s) 354, 387, 1035, 1419, 2601, 2700, 3057, 3155
PspN4I GGNNCC 5 cut(s) 223, 1021, 1425, 1861, 2115
PspPI GGNCC 3 cut(s) 1717, 1826, 2795
PstI CTGCAG 2 cut(s) 1081, 1918
PstNI CAGNNNCTG 4 cut(s) 93, 1555, 1691, 3443
PsuI RGATCY 2 cut(s) 1964, 3600
PsyI GACNNNGTC 1 cut(s) 3674
PvuII CAGCTG 4 cut(s) 1588, 2180, 2524, 2587
RsaI GTAC 4 cut(s) 446, 1512, 1704, 3657
RsaNI GTAC 4 cut(s) 445, 1511, 1703, 3656
RseI CAYNNNNRTG 3 cut(s) 902, 2408, 3518
SacI GAGCTC 1 cut(s) 2902
SalI GTCGAC 1 cut(s) 1297
SaqAI TTAA 8 cut(s) 1086, 1386, 1635, 1892, 1970, 2139, 2645, 3387
Sau96I GGNCC 3 cut(s) 1717, 1826, 2795
ScaI AGTACT 1 cut(s) 1512
SchI GAGTC 6 cut(s) 113, 1231, 3071, 3095, 3473, 3543
ScrFI CCNGG 9 cut(s) 356, 389, 1037, 1421, 1451, 2603, 2702, 3059, 3157
SduI GDGCHC 5 cut(s) 1678, 1769, 2293, 2902, 3631
SfcI CTRYAG 7 cut(s) 94, 753, 1077, 1263, 1914, 2175, 3765
SinI GGWCC 2 cut(s) 1717, 1826
SmiMI CAYNNNNRTG 3 cut(s) 902, 2408, 3518
SmlI CTYRAG 3 cut(s) 161, 1969, 2045
SmoI CTYRAG 3 cut(s) 161, 1969, 2045
SpeI ACTAGT 1 cut(s) 1840
SphI GCATGC 1 cut(s) 247
SsiI CCGC 5 cut(s) 74, 1290, 2122, 2125, 3027
SspI AATATT 4 cut(s) 1224, 1459, 1650, 2536
SstI GAGCTC 1 cut(s) 2902
StyD4I CCNGG 9 cut(s) 354, 387, 1035, 1419, 1449, 2601, 2700, 3057, 3155
StyI CCWWGG 6 cut(s) 330, 1228, 1334, 1563, 2308, 3219
TaiI ACGT 5 cut(s) 1934, 2386, 3168, 3565, 3741
TaqI TCGA 7 cut(s) 483, 590, 1298, 1442, 1735, 2990, 3306
TaqII GACCGA 2 cut(s) 1225, 1734
TatI WGTACW 3 cut(s) 1510, 1702, 3655
TauI GCSGC 2 cut(s) 2127, 3029
Tru1I TTAA 8 cut(s) 1086, 1386, 1635, 1892, 1970, 2139, 2645, 3387
Tru9I TTAA 8 cut(s) 1086, 1386, 1635, 1892, 1970, 2139, 2645, 3387
TscAI CASTG 8 cut(s) 1308, 1683, 2163, 2236, 2496, 2836, 3267, 3631
TseFI GTSAC 5 cut(s) 1166, 2006, 2302, 2626, 3293
Tsp45I GTSAC 5 cut(s) 1166, 2006, 2302, 2626, 3293
TspGWI ACGGA 3 cut(s) 3141, 3389, 3774
TspRI CASTG 8 cut(s) 1308, 1683, 2163, 2236, 2496, 2836, 3267, 3631
Tth111I GACNNNGTC 1 cut(s) 3674
Van91I CCANNNNNTGG 2 cut(s) 1340, 2213
Vha464I CTTAAG 1 cut(s) 1969
VneI GTGCAC 2 cut(s) 1674, 3627
VpaK11BI GGWCC 2 cut(s) 1717, 1826
XapI RAATTY 3 cut(s) 2648, 3318, 3447
XbaI TCTAGA 1 cut(s) 1657
XceI RCATGY 2 cut(s) 247, 901
XcmI CCANNNNNNNNNTGG 2 cut(s) 928, 3545
XmiI GTMKAC 3 cut(s) 351, 1298, 2874
ZrmI AGTACT 1 cut(s) 1512
Zsp2I ATGCAT 1 cut(s) 3667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.