Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002816.1

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Reverse (-)

6665 .. 12117

Gene Structure 5453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002816.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgggtgatcaggagaatcctttggatggagatcatgtgatcagagaggaagctgccgtgtcaaaaagtcagtcagcagggccggaatcccagaatggaccggaaagtagtagtaacaaggaagatgcaagcaagagcaaggagggtggcaccaaggcagtaccctttttcaagctcttctcatttgctgattccatggattacttgttaatgtcggttggtacgattggagctatcggaaatggagtgtgtatgcctctaatgaccataatcatgggagatgtgattaattcttttggagaatctgggaattccaataaagtggttgacacagtgtctaaggaaaaatgtgaaggtcctattaaaagtgggataagacaaggcttagttagcggaattggttttgggctatcgttctttttgctattttctgtgtatgcctgcagtttctatgctggagcccgacttgttgcagcaggcaagacagaattttctgacgtgtttcgggttttctttgctctcactatgacagctgttggaatatctcagtcgagctccctagcccctgatataagtaaaggaaagagttctgcttcttccatatttgcaattcttgacggcaagtcaaaaatagactctagtgacgactctggaactacaatagaaaatgtgaagggagatattgaactacgccatgtcagtttcaagtatccaactagacccaacgtgccaatctttcaggatctttgcttgaccattcatcatggcaagacggttgctctggttggagaaagtggtagtgggaagtcgacagtgatctcattgttgcagagattttatgaccctgattcaggtcacattacattagatggaatcgaaatccaaaagctacaactgaagtggttgagacagcaaatggggctggtgagccaagagcctctgctgtttaatgacactatccgagccaacattgcatatggaaaggatgggaatgcaaccgaagctgaaattatagctgcagcagaattggcaaatgcccacaagttcatcagtagcttacaacagggttacgatacagtagtaggagagaggggggtccaaatgtctggtgggcagaagcaaagggtggcaattgcacgagctattatgaaggcgccaaagatattactcctagatgaggccaccagtgcacttgatgctgaatctgaacgagtcgttcaagatgcattggacagagtaatggtggatcgaacaacagtggtggttgctcatcggttatcgacaatcagaagtgcagatttgatagcagtggtaaagaatggagtcattgcagagaaaggaaagcatgagactttgatcaatatcaaggatggcacttatgcttctctggtagcattacatgcaagtgcctcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

472

Amino Acids

50.27

Weight (kDa)

5.79

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	149, 1153
AccI	GTMKAC	1 cut(s)	809
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	750, 1254
AcsI	RAATTY	2 cut(s)	310, 488
AcuI	CTGAAG	1 cut(s)	917
AcyI	GRCGYC	1 cut(s)	1154
AfaI	GTAC	2 cut(s)	162, 223
AfiI	CCNNNNNNNGG	3 cut(s)	26, 851, 1177
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	4 cut(s)	172, 686, 706, 1220
AhdI	GACNNNNNGTC	2 cut(s)	334, 622
AjiI	CACGTC	1 cut(s)	499
Alw21I	GWGCWC	2 cut(s)	557, 1192
Alw26I	GTCTC	2 cut(s)	901, 1343
Alw44I	GTGCAC	1 cut(s)	1188
AlwI	GGATC	2 cut(s)	750, 1254
AoxI	GGCC	2 cut(s)	80, 1179
ApaLI	GTGCAC	1 cut(s)	1188
ApeKI	GCWGC	4 cut(s)	53, 473, 1016, 1019
ApoI	RAATTY	2 cut(s)	310, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	1156
AspS9I	GGNCC	4 cut(s)	80, 98, 356, 1096
AsuHPI	GGTGA	2 cut(s)	17, 937
AvaII	GGWCC	3 cut(s)	98, 356, 1096
BaeGI	GKGCMC	1 cut(s)	1192
BaeI	ACNNNNGTAYC	2 cut(s)	1065, 1098
BanI	GGYRCC	2 cut(s)	149, 1153
BanII	GRGCYC	2 cut(s)	463, 557
BauI	CACGAG	1 cut(s)	1137
Bbv12I	GWGCWC	2 cut(s)	557, 1192
BbvI	GCAGC	4 cut(s)	40, 485, 1003, 1031
BccI	CCATC	4 cut(s)	20, 863, 980, 1364
BceAI	ACGGC	2 cut(s)	41, 634
BciVI	GTATCC	1 cut(s)	720
BclI	TGATCA	3 cut(s)	7, 39, 1356
BcoDI	GTCTC	2 cut(s)	901, 1343
BfaI	CTAG	4 cut(s)	560, 639, 717, 1172
BfmI	CTRYAG	2 cut(s)	442, 1017
BfoI	RGCGCY	1 cut(s)	1157
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	4 cut(s)	54, 474, 1017, 1020
BlsI	GCNGC	4 cut(s)	55, 475, 1018, 1021
Bme18I	GGWCC	3 cut(s)	98, 356, 1096
BmeRI	GACNNNNNGTC	2 cut(s)	334, 622
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	80, 98, 356, 1096
BmiI	GGNNCC	4 cut(s)	151, 460, 1097, 1155
BmsI	GCATC	3 cut(s)	115, 1186, 1213
BpmI	CTGGAG	1 cut(s)	477
BsaBI	GATNNNNATC	2 cut(s)	30, 1361
BsaHI	GRCGYC	1 cut(s)	1154
BsaJI	CCNNGG	2 cut(s)	153, 195
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 851, 1177
Bse1I	ACTGG	1 cut(s)	1185
Bse3DI	GCAATG	2 cut(s)	969, 1326
Bse8I	GATNNNNATC	2 cut(s)	30, 1361
BseDI	CCNNGG	2 cut(s)	153, 195
BseGI	GGATG	3 cut(s)	31, 991, 1375
BseJI	GATNNNNATC	2 cut(s)	30, 1361
BseLI	CCNNNNNNNGG	3 cut(s)	26, 851, 1177
BseMI	GCAATG	2 cut(s)	969, 1326
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	1185
BseSI	GKGCMC	1 cut(s)	1192
BseXI	GCAGC	4 cut(s)	40, 485, 1003, 1031
BsgI	GTGCAG	1 cut(s)	1314
BshFI	GGCC	2 cut(s)	82, 1181
BshNI	GGYRCC	2 cut(s)	149, 1153
BsiHKAI	GWGCWC	2 cut(s)	557, 1192
BsiSI	CCGG	2 cut(s)	83, 101
BslI	CCNNNNNNNGG	3 cut(s)	26, 851, 1177
BsmAI	GTCTC	2 cut(s)	901, 1343
BsmI	GAATGC	1 cut(s)	997
BsnI	GGCC	2 cut(s)	82, 1181
Bsp1286I	GDGCHC	3 cut(s)	463, 557, 1192
Bsp143I	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	2 cut(s)	82, 1181
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	4 cut(s)	151, 460, 1097, 1155
BspMAI	CTGCAG	2 cut(s)	446, 1021
BspPI	GGATC	2 cut(s)	750, 1254
BspQI	GCTCTTC	1 cut(s)	182
BspT107I	GGYRCC	2 cut(s)	149, 1153
BsrDI	GCAATG	2 cut(s)	969, 1326
BsrI	ACTGG	1 cut(s)	1185
BssECI	CCNNGG	2 cut(s)	153, 195
BssMI	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
BssNI	GRCGYC	1 cut(s)	1154
BssSI	CACGAG	1 cut(s)	1137
BssT1I	CCWWGG	2 cut(s)	153, 195
Bst2BI	CACGAG	1 cut(s)	1137
Bst4CI	ACNGT	5 cut(s)	334, 775, 814, 1078, 1258
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	1154
BstAPI	GCANNNNNTGC	2 cut(s)	1196, 1400
BstC8I	GCNNGC	3 cut(s)	130, 442, 478
BstDEI	CTNAG	4 cut(s)	339, 385, 546, 1416
BstDSI	CCRYGG	1 cut(s)	195
BstENI	CCTNNNNNAGG	2 cut(s)	849, 1175
BstF5I	GGATG	3 cut(s)	31, 991, 1375
BstH2I	RGCGCY	1 cut(s)	1157
BstHHI	GCGC	1 cut(s)	1156
BstKTI	GATC	7 cut(s)	10, 34, 42, 745, 819, 1249, 1359
BstMAI	GTCTC	2 cut(s)	901, 1343
BstMBI	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
BstMWI	GCNNNNNNNGC	8 cut(s)	390, 919, 971, 1001, 1028, 1187, 1196, 1400
BstNSI	RCATGY	1 cut(s)	1403
BstSFI	CTRYAG	2 cut(s)	442, 1017
BstSLI	GKGCMC	1 cut(s)	1192
BstV1I	GCAGC	4 cut(s)	40, 485, 1003, 1031
BstX2I	RGATCY	1 cut(s)	742
BstXI	CCANNNNNNTGG	3 cut(s)	274, 322, 1106
BstYI	RGATCY	1 cut(s)	742
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	82, 1181
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	3 cut(s)	31, 991, 1375
BtsI	GCAGTG	1 cut(s)	1314
BtsIMutI	CAGTG	5 cut(s)	339, 819, 1192, 1263, 1314
Cac8I	GCNNGC	3 cut(s)	130, 442, 478
CfoI	GCGC	1 cut(s)	1156
Cfr13I	GGNCC	4 cut(s)	80, 98, 356, 1096
Csp6I	GTAC	2 cut(s)	161, 222
CspCI	CAANNNNNGTGG	6 cut(s)	127, 162, 881, 916, 1242, 1277
CviAII	CATG	7 cut(s)	35, 196, 274, 695, 764, 1346, 1400
CviQI	GTAC	2 cut(s)	161, 222
DdeI	CTNAG	4 cut(s)	339, 385, 546, 1416
DinI	GGCGCC	1 cut(s)	1155
DpnI	GATC	7 cut(s)	9, 33, 41, 744, 818, 1248, 1358
DpnII	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
DriI	GACNNNNNGTC	2 cut(s)	334, 622
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	2 cut(s)	334, 622
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	555
Eco130I	CCWWGG	2 cut(s)	153, 195
Eco24I	GRGCYC	2 cut(s)	463, 557
Eco47I	GGWCC	3 cut(s)	98, 356, 1096
Eco53kI	GAGCTC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	555
EcoNI	CCTNNNNNAGG	2 cut(s)	849, 1175
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	153, 195
EcoT22I	ATGCAT	1 cut(s)	1228
EcoT38I	GRGCYC	2 cut(s)	463, 557
EgeI	GGCGCC	1 cut(s)	1155
EheI	GGCGCC	1 cut(s)	1155
ErhI	CCWWGG	2 cut(s)	153, 195
FaeI	CATG	7 cut(s)	38, 199, 277, 698, 767, 1349, 1403
FalI	AAGNNNNNCTT	1 cut(s)	1396
FatI	CATG	7 cut(s)	34, 195, 273, 694, 763, 1345, 1399
FauNDI	CATATG	1 cut(s)	976
FbaI	TGATCA	3 cut(s)	7, 39, 1356
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	4 cut(s)	54, 474, 1017, 1020
FokI	GGATG	3 cut(s)	38, 998, 1382
FriOI	GRGCYC	2 cut(s)	463, 557
Fsp4HI	GCNGC	4 cut(s)	54, 474, 1017, 1020
FspBI	CTAG	4 cut(s)	560, 639, 717, 1172
GlaI	GCGC	1 cut(s)	1155
GluI	GCNGC	4 cut(s)	54, 474, 1017, 1020
GsuI	CTGGAG	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	1157
HaeIII	GGCC	2 cut(s)	82, 1181
HapII	CCGG	2 cut(s)	83, 101
HhaI	GCGC	1 cut(s)	1156
Hin1I	GRCGYC	1 cut(s)	1154
Hin1II	CATG	7 cut(s)	38, 199, 277, 698, 767, 1349, 1403
Hin6I	GCGC	1 cut(s)	1154
HinP1I	GCGC	1 cut(s)	1154
HincII	GTYRAC	2 cut(s)	328, 810
HindII	GTYRAC	2 cut(s)	328, 810
HpaII	CCGG	2 cut(s)	83, 101
HphI	GGTGA	2 cut(s)	17, 937
Hpy166II	GTNNAC	3 cut(s)	328, 810, 1190
Hpy188I	TCNGA	6 cut(s)	44, 239, 496, 962, 1207, 1289
Hpy188III	TCNNGA	5 cut(s)	11, 614, 651, 740, 1220
Hpy8I	GTNNAC	3 cut(s)	328, 810, 1190
HpyAV	CCTTC	3 cut(s)	347, 667, 1144
HpyCH4III	ACNGT	5 cut(s)	334, 775, 814, 1078, 1258
HpyCH4IV	ACGT	2 cut(s)	498, 726
HpyF10VI	GCNNNNNNNGC	8 cut(s)	390, 919, 971, 1001, 1028, 1187, 1196, 1400
HpyF3I	CTNAG	4 cut(s)	339, 385, 546, 1416
HpySE526I	ACGT	2 cut(s)	498, 726
Hsp92I	GRCGYC	1 cut(s)	1154
Hsp92II	CATG	7 cut(s)	38, 199, 277, 698, 767, 1349, 1403
HspAI	GCGC	1 cut(s)	1154
KasI	GGCGCC	1 cut(s)	1153
Ksp22I	TGATCA	3 cut(s)	7, 39, 1356
Kzo9I	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	3 cut(s)	230, 458, 560
Lsp1109I	GCAGC	4 cut(s)	40, 485, 1003, 1031
LweI	GCATC	3 cut(s)	115, 1186, 1213
MaeI	CTAG	4 cut(s)	560, 639, 717, 1172
MaeII	ACGT	2 cut(s)	498, 726
MaeIII	GTNAC	4 cut(s)	113, 641, 854, 1067
MalI	GATC	7 cut(s)	9, 33, 41, 744, 818, 1248, 1358
MboI	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
MboII	GAAGA	4 cut(s)	134, 169, 588, 1404
MfeI	CAATTG	1 cut(s)	1131
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	3 cut(s)	463, 557, 1192
MluCI	AATT	8 cut(s)	289, 310, 396, 488, 609, 1008, 1025, 1131
Mly113I	GGCGCC	1 cut(s)	1154
MlyI	GAGTC	4 cut(s)	629, 641, 1221, 1332
MmeI	TCCRAC	3 cut(s)	517, 737, 766
MnlI	CCTC	6 cut(s)	40, 136, 267, 948, 1083, 1171
Mph1103I	ATGCAT	1 cut(s)	1228
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	4 cut(s)	209, 288, 363, 948
MslI	CAYNNNNRTG	2 cut(s)	272, 1404
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	2 cut(s)	83, 101
MunI	CAATTG	1 cut(s)	1131
Mva1269I	GAATGC	1 cut(s)	997
MwoI	GCNNNNNNNGC	8 cut(s)	390, 919, 971, 1001, 1028, 1187, 1196, 1400
NarI	GGCGCC	1 cut(s)	1154
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
NlaIII	CATG	7 cut(s)	38, 199, 277, 698, 767, 1349, 1403
NlaIV	GGNNCC	4 cut(s)	151, 460, 1097, 1155
NmuCI	GTSAC	2 cut(s)	641, 854
NsiI	ATGCAT	1 cut(s)	1228
NspI	RCATGY	1 cut(s)	1403
PciSI	GCTCTTC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PctI	GAATGC	1 cut(s)	997
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	7 cut(s)	16, 86, 191, 302, 848, 873, 1202
PkrI	GCNGC	4 cut(s)	55, 475, 1018, 1021
PleI	GAGTC	4 cut(s)	629, 641, 1220, 1331
PluTI	GGCGCC	1 cut(s)	1157
PpsI	GAGTC	4 cut(s)	629, 641, 1220, 1331
PpuMI	RGGWCCY	1 cut(s)	356
PshBI	ATTAAT	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	151, 460, 1097, 1155
PspPI	GGNCC	4 cut(s)	80, 98, 356, 1096
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	2 cut(s)	446, 1021
PsuI	RGATCY	1 cut(s)	742
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	162, 223
RsaNI	GTAC	2 cut(s)	161, 222
RseI	CAYNNNNRTG	2 cut(s)	272, 1404
SacI	GAGCTC	1 cut(s)	557
SalI	GTCGAC	1 cut(s)	808
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	209, 288, 363, 948
SatI	GCNGC	4 cut(s)	54, 474, 1017, 1020
Sau3AI	GATC	7 cut(s)	7, 31, 39, 742, 816, 1246, 1356
Sau96I	GGNCC	4 cut(s)	80, 98, 356, 1096
SchI	GAGTC	4 cut(s)	629, 641, 1221, 1332
SduI	GDGCHC	3 cut(s)	463, 557, 1192
SfaNI	GCATC	3 cut(s)	115, 1186, 1213
SfcI	CTRYAG	2 cut(s)	442, 1017
SfoI	GGCGCC	1 cut(s)	1155
SinI	GGWCC	3 cut(s)	98, 356, 1096
SmiMI	CAYNNNNRTG	2 cut(s)	272, 1404
Sse9I	AATT	8 cut(s)	289, 310, 396, 488, 609, 1008, 1025, 1131
SsiI	CCGC	1 cut(s)	393
SspDI	GGCGCC	1 cut(s)	1153
SspMI	CTAG	4 cut(s)	560, 639, 717, 1172
SstI	GAGCTC	1 cut(s)	557
StyI	CCWWGG	2 cut(s)	153, 195
TaaI	ACNGT	5 cut(s)	334, 775, 814, 1078, 1258
TaiI	ACGT	2 cut(s)	501, 729
TaqI	TCGA	5 cut(s)	551, 809, 876, 1249, 1280
TasI	AATT	8 cut(s)	289, 310, 396, 488, 609, 1008, 1025, 1131
TfiI	GAWTC	7 cut(s)	16, 86, 191, 302, 848, 873, 1202
Tru1I	TTAA	4 cut(s)	209, 288, 363, 948
Tru9I	TTAA	4 cut(s)	209, 288, 363, 948
TscAI	CASTG	5 cut(s)	339, 819, 1192, 1263, 1314
TseFI	GTSAC	2 cut(s)	641, 854
TseI	GCWGC	4 cut(s)	53, 473, 1016, 1019
Tsp45I	GTSAC	2 cut(s)	641, 854
TspDTI	ATGAA	3 cut(s)	749, 1036, 1163
TspRI	CASTG	5 cut(s)	339, 819, 1192, 1263, 1314
VneI	GTGCAC	1 cut(s)	1188
VpaK11BI	GGWCC	3 cut(s)	98, 356, 1096
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	2 cut(s)	849, 1175
XapI	RAATTY	2 cut(s)	310, 488
XceI	RCATGY	1 cut(s)	1403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1106
XmiI	GTMKAC	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	4 cut(s)	560, 639, 717, 1172
Zsp2I	ATGCAT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.