RchiOBHm_Chr4g0427151

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000116
Physical Location & Seq
Reverse (-)
52431424 .. 52437239
5816 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39610

Sequence Viewer

Length: 3873 bp
ATGGCTGATGATCACAAAAAACAGTTGGATGGAGATTTTGCCACAGAGCCAGCAGAAACAGCATCAGCAAACGCAGTAGAATTCAAAAACAACCAAGAAAATACTTCTGGCAATAAGAGCAAGGAGGAAGCAACCAATACAGTACCATACTACAAGCTTTTCTCATTTGCTGATTCCATGGATTGCCTGTTAATGTCTGTTGGTATGATCGGCGCAATTGGAAATGGACTATGTCTGCCTCTAATGACCGTGATCATGGGAGAAGTGATTAACTCCTTTGGAGAAACTACGAATACCAAAAATGTGGTTAGTTTAGTTTCCCAGGTAGCACTAAAGTTCGTTTACTTGGCTGTAGGGGCTGCTGCTGCTGCATTTTCACAGATGTCTTGCTGGATGATCACCGGAGAGAGACAGGCTGCACGAATAAGATGTTTATACCTGAAAACAATACTGAGGCAAGATGTTGGTTTTTTTGATAAAGAAGCTAATACTGGGGAAATTGTTGGGAGAATGTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGGGAGAAAGTAGGAACTTTTATCCAGTTAGTTGCAACATTTATAGGAGGTTTTGTTATAGCATTTGCCAAGGGATGGCATCTCACCGTTGTCATGATCACCTCTATTCCCCCTATTATCTTGTCTGGTGCTGTCATGAGCCTCACTATAAGGAAGTTGGCATCCCGCGGACAAGCTGCTTATTCAGTTGGAGCAACTGTGGTAGAGCAGACAATTGGTTCAATCAGAACTGTTGCGTCATTTACGAGGGAGAATCAAGCTATAACTAAGTACAACAACTCCTTAGCTAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTAGCATCAGGAGTGGGTCTTGGTACGGTTATTCTTACTTTATTCTGCAGTTATGCATTGGCTATATGGTATGGTGGCAAAATGATACTTGAAAAGGGGTACAATGCAGGAGACGTCATCAATGTGATTTTTGCTGTATTCACTGGTTCTTTCTCCCTCGGGCAAGCATCTCCATGCGTGAGTGCATTTTCTGCAGGACAAGCTGCAGCTTATAAGATGTTTGTGACAATCAACAGAAAGCCAGATATAGATGTGTATGACACCAGAGGACTAAAATCACAAGAGATCCGCGGAGACATTGAACTGAGGGATGTTTATTTTAGTTATCCTGCAAGACCGGATGAGCAAATATTCCTCGGATTTTCTCTCTCGATACCTAGTGGTGCAACTGTTGCTTTGGTTGGACAAAGCGGAAGTGGTAAATCAACTGTCATCAGTTTGATTGAGAGATTTTATGATCCCCAGGCTGGTGAAGTTCTTATTGATGGGAACAATCTAAAAGAGTTTCAACTGAAATGGATCAGACAGAAAATAGGCCTTGTAAGTCAGGAACCTGTTTTGTTTAGTGGTAGCATTAAAGATAATATTGGCTATGGAAAGGATGATGCAACAACTAAAGAAATGAGGGCTGCTGCTGAGCTGGCCAATGCTGCAAAATTCATAGACAAACTACCTCAGGGACTAGATACAATGGTTGGTGAACATGGAACTCAGCTATCTGGGGGCCAAAAGCAGAGAATTGCCATAGCAAGAGCAATTCTGAAGAACCCAAGAATTCTGCTTTTGGATGAAGCAACAAGCGCTCTTGATGTAGAATCTGAGAGAGTTGTTCAAGAGGCATTGGACAGAATTATGGTTAACAGGACTACTGTCATTGTAGCCCATCGCTTGAGCACAGTGAGGACTGCTGATACAATTGCAGTAATACATCGCGGAAAAATTGTTGAAAAAGGACCACATACTGAGCTGGTTAAGGATCCTGATGGTGCATATAGCCAACTTATAAGATTGCAAGAAATTAGCAATGTGTCAGAACATGATGCTCAAAATGATCATGAAAGGCCAGAAATTTCCTCAAGTTTTCGGAAACTTTCTTCCTTTAGATCCATAAGTCTGGGGTCATCAGAAATAGGAAATAGTAGTCGCCGTAGTCACTCATTTTCAATCTCACATGGTGCTCCTACTGTAACCGGTGTCTTTGAAATAGCTCCTGCAGAACCTGACATTCTATCTGCATCGATAGAAGTGCATCCGGAAGTCTCACTTAGCCGCCTGGCTTATCTGAACAAGACAGAAATCCCAGTACTACTTCTAGGTTCTATAGCTGCAGCAATCTGTGGCGTAATCTTGCCTATTTTTGGGGTGCTAATATCTAGCGTAATCAAGACCTTCTTTGATCCACCTCATCAGCTCCGAAAGGACTCAAAACTTTGGGCGTTAATTTTTGTTGTTATTGGAGTGGTGGCTCTCTTGGCGCATCCAGTGAGAGCATACTTCTTTGCTGTGGCAGGGTGTAAGTTAATAAGACGAATCCGATCACTATGCTTTGAGAAGGTCATTTATATGGAAGCAAGTTGGTTTGATGAAGCCGAGCACTCGAGTGGTGCACTTGGTGCAAGGCTTTCAGGAAATGCAGCTTCTCTGCGAGGGTTGGTTGGAGATGCTCTCAGTTTGGCTGTTATGCATGCATCAACTACAATTGCTGGCTTGGTTATTGCTTTTTTGGCAAACTGGCAACTTGCTTTTATTATTCTTCTTATGCTGCCTCTACTAGGAATAAGTGGATATTTTCAAATCGAGGTCCTGAAAGGATTAAGCTCAAATGCAAAGAAAATGTATGAAGATGCAAGCCAAGTAGCCACCGATGCTGTGGGGAGTATTAGAACAATTGCTTCCTTTTGTGCTGAGGAAAAGATTATTAAGTTGTACCAGACAAAATGTGAAGGTCCTATCAAGGCAGGGATAAGACAAGGTATAGTTAGTGGAATAGGCTTTGGGCTATCACTCTTCTTGCTCTTTTCTGTATATGCATGCAGTTTCTATGCAGGGGCACAACTTGTTGGAGCAGGCAAGACGACATTCCCAGATGTTTTTCGGGTTTTCTTTGCCCTCACTATGACAGCTGTGGCACTGTCTCAACAGGGTTCCTTAGCCCCTGATGCAAGCAAAGGAAAGAGCTCTGCTGCTTCAATATTTGCAATTCTTGACCGGAAATCAAAAATAGATGCTAGTGATAACTCCGGAACAACTATAGAAAATTTGAAGGGAGAAATTGAATTTTGGCATGTTAGTTTCAAGTATCCAAATAGACCTAATGTACCAATATTCCAGGATCTGTGCTTGACCATTCACTATGGGCAGACAGTTGCTCTGGTTGGAGAAAGCGGAAGTGGGAAATCAACAGTGATCTCATTGCTGCAGAGATTTTATGATCCTGATTCAGGTCACATTACATTAGATGGTACTGAAATGCAAACATTACAGCTGAAGTGGTTGAGGCAGCAGATGGGGCTGGTGAGCCAGGAGCCTCTACTTTTTAATGACACTATCAGAGCCAACATTGCATATGGAAAGGAAGGGAGTGCAACCGAGGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGCTCACAAGTTCATTAGTAGTTTACAACATGGCTATGATACAATAGTAGGTGAGCGAGGGGTCCAACTCTCAGGTGGACAGAAGCAAAGGGTAGCTATTGCAAGAGCTATAATGAAGGCACCAAAGATATTGCTACTAGATGAAGCCACCAGTGCTCTTGATGCTGAATCCGAAAGAGTGGTTCAAGATGCACTGGATCGAGTTATGGTGGATCGAACTACAGTGGTGGTTGCCCATCAGCTATCCACAATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTCATTACAGAGAAAGGAAAGCATGAAACTCTGATCGGTATCAAGGGTGGAACTTATGCTTCTTTGGTAGCACTACATGCAAGTGCCTCATCTTAG

Protein Analysis

1290

Amino Acids

138.76

Weight (kDa)

7.1

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 67 - 339 4.8e-57 ABC transporter transmembrane region
ABC_tran PF00005 409 - 555 1.7e-34 ABC transporter
ABC_membrane PF00664 725 - 997 7.6e-54 ABC transporter transmembrane region
ABC_tran PF00005 1065 - 1214 7.5e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1077, 1868
AatII GACGTC 1 cut(s) 981
AccB1I GGYRCC 1 cut(s) 3607
AccB7I CCANNNNNTGG 1 cut(s) 621
AccII CGCG 3 cut(s) 714, 1155, 1797
AccIII TCCGGA 2 cut(s) 2116, 3104
AciI CCGC 8 cut(s) 712, 714, 1153, 1155, 1275, 1797, 2134, 3249
AcoI YGGCCR 1 cut(s) 1506
AcsI RAATTY 6 cut(s) 80, 1520, 1638, 1932, 3121, 3140
AcuI CTGAAG 2 cut(s) 1646, 3371
AcyI GRCGYC 1 cut(s) 978
AdeI CACNNNGTG 2 cut(s) 2039, 2477
AfaI GTAC 8 cut(s) 144, 818, 889, 965, 2169, 2792, 3183, 3328
AfeI AGCGCT 1 cut(s) 1666
AfiI CCNNNNNNNGG 5 cut(s) 621, 1331, 2222, 2636, 3305
AgeI ACCGGT 1 cut(s) 2054
AjnI CCWGG 5 cut(s) 321, 1326, 2136, 3192, 3384
AleI CACNNNNGTG 1 cut(s) 2463
Alw21I GWGCWC 7 cut(s) 531, 1760, 2044, 2460, 2473, 3044, 3646
Alw26I GTCTC 5 cut(s) 403, 969, 1152, 2128, 3003
Alw44I GTGCAC 1 cut(s) 2469
AlwNI CAGNNNCTG 2 cut(s) 2084, 3199
Ama87I CYCGRG 2 cut(s) 1022, 2461
Aor13HI TCCGGA 2 cut(s) 2116, 3104
Aor51HI AGCGCT 1 cut(s) 1666
AoxI GGCC 5 cut(s) 540, 1399, 1506, 1588, 1925
ApaLI GTGCAC 1 cut(s) 2469
ApoI RAATTY 6 cut(s) 80, 1520, 1638, 1932, 3121, 3140
AsiGI ACCGGT 1 cut(s) 2054
AspLEI GCGC 3 cut(s) 215, 1667, 2341
AspS9I GGNCC 5 cut(s) 1588, 1817, 2665, 2810, 3550
AsuHPI GGTGA 9 cut(s) 391, 530, 622, 637, 1346, 1574, 3391, 3551, 3778
AvaI CYCGRG 2 cut(s) 1022, 2461
AvaII GGWCC 4 cut(s) 1817, 2665, 2810, 3550
AxyI CCTNAGG 1 cut(s) 1539
BaeGI GKGCMC 2 cut(s) 2473, 2917
BaeI ACNNNNGTAYC 4 cut(s) 1542, 1575, 3519, 3552
BalI TGGCCA 1 cut(s) 1508
BamHI GGATCC 1 cut(s) 1840
BanI GGYRCC 1 cut(s) 3607
BanII GRGCYC 1 cut(s) 3044
Bbv12I GWGCWC 7 cut(s) 531, 1760, 2044, 2460, 2473, 3044, 3646
BbvCI CCTCAGC 1 cut(s) 2769
BccI CCATC 8 cut(s) 23, 615, 1343, 1755, 1841, 3317, 3364, 3732
BceAI ACGGC 1 cut(s) 1995
BcgI CGANNNNNNTGC 4 cut(s) 2092, 2126, 2388, 2422
BciT130I CCWGG 5 cut(s) 323, 1328, 2138, 3194, 3386
BciVI GTATCC 1 cut(s) 3174
BclI TGATCA 5 cut(s) 10, 252, 396, 642, 1915
BcoDI GTCTC 5 cut(s) 403, 969, 1152, 2128, 3003
BfaI CTAG 7 cut(s) 1242, 1547, 2177, 2238, 2636, 3093, 3626
BfoI RGCGCY 1 cut(s) 1668
BfuI GTATCC 1 cut(s) 3174
BlpI GCTNAGC 1 cut(s) 1500
BmcAI AGTACT 1 cut(s) 2169
Bme1390I CCNGG 5 cut(s) 323, 1328, 2138, 3194, 3386
Bme18I GGWCC 4 cut(s) 1817, 2665, 2810, 3550
BmeT110I CYCGRG 2 cut(s) 1022, 2461
BmgT120I GGNCC 5 cut(s) 1588, 1817, 2665, 2810, 3550
BmiI GGNNCC 7 cut(s) 1416, 1589, 1842, 3010, 3390, 3551, 3609
BmrFI CCNGG 5 cut(s) 323, 1328, 2138, 3194, 3386
BmrI ACTGGG 2 cut(s) 501, 2159
BmuI ACTGGG 2 cut(s) 501, 2159
BoxI GACNNNNGTC 1 cut(s) 1733
BplI GAGNNNNNCTC 2 cut(s) 2514, 2546
Bpu10I CCTNAGC 3 cut(s) 829, 2769, 3013
Bpu1102I GCTNAGC 1 cut(s) 1500
BpuEI CTTGAG 2 cut(s) 1774, 1924
Bsa29I ATCGAT 1 cut(s) 2102
BsaBI GATNNNNATC 1 cut(s) 3815
BsaHI GRCGYC 1 cut(s) 978
BsaWI WCCGGW 6 cut(s) 401, 1201, 2054, 2116, 3072, 3104
BsaXI ACNNNNNCTCC 6 cut(s) 585, 615, 729, 759, 809, 839
Bsc4I CCNNNNNNNGG 5 cut(s) 621, 1331, 2222, 2636, 3305
Bse118I RCCGGY 1 cut(s) 2054
Bse1I ACTGG 8 cut(s) 496, 571, 1012, 2165, 2345, 2600, 3639, 3687
Bse21I CCTNAGG 1 cut(s) 1539
Bse3DI GCAATG 3 cut(s) 1894, 3275, 3423
Bse8I GATNNNNATC 1 cut(s) 3815
BseAI TCCGGA 2 cut(s) 2116, 3104
BseBI CCWGG 5 cut(s) 323, 1328, 2138, 3194, 3386
BseCI ATCGAT 1 cut(s) 2102
BseJI GATNNNNATC 1 cut(s) 3815
BseLI CCNNNNNNNGG 5 cut(s) 621, 1331, 2222, 2636, 3305
BseMI GCAATG 3 cut(s) 1894, 3275, 3423
BseNI ACTGG 8 cut(s) 496, 571, 1012, 2165, 2345, 2600, 3639, 3687
BseSI GKGCMC 2 cut(s) 2473, 2917
BsgI GTGCAG 2 cut(s) 402, 3768
Bsh1236I CGCG 3 cut(s) 714, 1155, 1797
BshFI GGCC 5 cut(s) 542, 1401, 1508, 1590, 1927
BshNI GGYRCC 1 cut(s) 3607
BshTI ACCGGT 1 cut(s) 2054
BshVI ATCGAT 1 cut(s) 2102
BsiHKAI GWGCWC 7 cut(s) 531, 1760, 2044, 2460, 2473, 3044, 3646
BsiHKCI CYCGRG 2 cut(s) 1022, 2461
BsiSI CCGG 6 cut(s) 402, 1202, 2055, 2117, 3073, 3105
BslFI GGGAC 1 cut(s) 1557
BslI CCNNNNNNNGG 5 cut(s) 621, 1331, 2222, 2636, 3305
BsmAI GTCTC 5 cut(s) 403, 969, 1152, 2128, 3003
BsmBI CGTCTC 1 cut(s) 969
BsmFI GGGAC 1 cut(s) 1557
BsnI GGCC 5 cut(s) 542, 1401, 1508, 1590, 1927
BsoBI CYCGRG 2 cut(s) 1022, 2461
Bsp1286I GDGCHC 8 cut(s) 531, 1760, 2044, 2460, 2473, 2917, 3044, 3646
Bsp13I TCCGGA 2 cut(s) 2116, 3104
Bsp1720I GCTNAGC 1 cut(s) 1500
Bsp19I CCATGG 2 cut(s) 177, 543
BspACI CCGC 8 cut(s) 712, 714, 1153, 1155, 1275, 1797, 2134, 3249
BspANI GGCC 5 cut(s) 542, 1401, 1508, 1590, 1927
BspDI ATCGAT 1 cut(s) 2102
BspEI TCCGGA 2 cut(s) 2116, 3104
BspFNI CGCG 3 cut(s) 714, 1155, 1797
BspHI TCATGA 3 cut(s) 639, 681, 1918
BspLI GGNNCC 7 cut(s) 1416, 1589, 1842, 3010, 3390, 3551, 3609
BspMAI CTGCAG 7 cut(s) 914, 1060, 1072, 2080, 2194, 3285, 3475
BspT107I GGYRCC 1 cut(s) 3607
BsrDI GCAATG 3 cut(s) 1894, 3275, 3423
BsrFI RCCGGY 1 cut(s) 2054
BsrI ACTGG 8 cut(s) 496, 571, 1012, 2165, 2345, 2600, 3639, 3687
BssAI RCCGGY 1 cut(s) 2054
BssNI GRCGYC 1 cut(s) 978
BssT1I CCWWGG 3 cut(s) 177, 543, 615
Bst2UI CCWGG 5 cut(s) 323, 1328, 2138, 3194, 3386
Bst6I CTCTTC 1 cut(s) 2876
BstACI GRCGYC 1 cut(s) 978
BstAPI GCANNNNNTGC 4 cut(s) 1055, 1256, 2477, 3854
BstC8I GCNNGC 9 cut(s) 51, 1029, 1506, 2550, 2569, 2713, 2896, 2932, 3028
BstDSI CCRYGG 4 cut(s) 177, 543, 712, 1153
BstENI CCTNNNNNAGG 2 cut(s) 2634, 3303
BstFNI CGCG 3 cut(s) 714, 1155, 1797
BstH2I RGCGCY 1 cut(s) 1668
BstHHI GCGC 3 cut(s) 215, 1667, 2341
BstMAI GTCTC 5 cut(s) 403, 969, 1152, 2128, 3003
BstNI CCWGG 5 cut(s) 323, 1328, 2138, 3194, 3386
BstNSI RCATGY 4 cut(s) 2552, 2898, 3152, 3857
BstPAI GACNNNNGTC 1 cut(s) 1733
BstSCI CCNGG 5 cut(s) 321, 1326, 2136, 3192, 3384
BstSLI GKGCMC 2 cut(s) 2473, 2917
BstUI CGCG 3 cut(s) 714, 1155, 1797
BstX2I RGATCY 4 cut(s) 1149, 1840, 1967, 3196
BstXI CCANNNNNNTGG 2 cut(s) 304, 1978
BstYI RGATCY 4 cut(s) 1149, 1840, 1967, 3196
Bsu15I ATCGAT 1 cut(s) 2102
Bsu36I CCTNAGG 1 cut(s) 1539
BsuI GTATCC 1 cut(s) 3174
BsuRI GGCC 5 cut(s) 542, 1401, 1508, 1590, 1927
BsuTUI ATCGAT 1 cut(s) 2102
BtgI CCRYGG 4 cut(s) 177, 543, 712, 1153
BtgZI GCGATG 2 cut(s) 1733, 1778
BtsI GCAGTG 1 cut(s) 3768
BtsIMutI CAGTG 9 cut(s) 1005, 1767, 2352, 2993, 3273, 3646, 3680, 3717, 3768
Cac8I GCNNGC 9 cut(s) 51, 1029, 1506, 2550, 2569, 2713, 2896, 2932, 3028
CaiI CAGNNNCTG 2 cut(s) 2084, 3199
CciI TCATGA 3 cut(s) 639, 681, 1918
CfoI GCGC 3 cut(s) 215, 1667, 2341
Cfr10I RCCGGY 1 cut(s) 2054
Cfr13I GGNCC 5 cut(s) 1588, 1817, 2665, 2810, 3550
Cfr42I CCGCGG 2 cut(s) 715, 1156
ClaI ATCGAT 1 cut(s) 2102
CseI GACGC 1 cut(s) 771
Csp6I GTAC 8 cut(s) 143, 817, 888, 964, 2168, 2791, 3182, 3327
CspAI ACCGGT 1 cut(s) 2054
CviQI GTAC 8 cut(s) 143, 817, 888, 964, 2168, 2791, 3182, 3327
DraIII CACNNNGTG 2 cut(s) 2039, 2477
EaeI YGGCCR 1 cut(s) 1506
Eam1104I CTCTTC 1 cut(s) 2876
EarI CTCTTC 1 cut(s) 2876
Ecl136II GAGCTC 1 cut(s) 3042
Eco130I CCWWGG 3 cut(s) 177, 543, 615
Eco147I AGGCCT 1 cut(s) 1401
Eco24I GRGCYC 1 cut(s) 3044
Eco47I GGWCC 4 cut(s) 1817, 2665, 2810, 3550
Eco47III AGCGCT 1 cut(s) 1666
Eco53kI GAGCTC 1 cut(s) 3042
Eco57I CTGAAG 2 cut(s) 1646, 3371
Eco81I CCTNAGG 1 cut(s) 1539
Eco88I CYCGRG 2 cut(s) 1022, 2461
EcoICRI GAGCTC 1 cut(s) 3042
EcoNI CCTNNNNNAGG 2 cut(s) 2634, 3303
EcoO109I RGGNCCY 2 cut(s) 2665, 2810
EcoRI GAATTC 2 cut(s) 80, 1638
EcoRII CCWGG 5 cut(s) 321, 1326, 2136, 3192, 3384
EcoT14I CCWWGG 3 cut(s) 177, 543, 615
EcoT22I ATGCAT 4 cut(s) 922, 2550, 2554, 2896
EcoT38I GRGCYC 1 cut(s) 3044
ErhI CCWWGG 3 cut(s) 177, 543, 615
Esp3I CGTCTC 1 cut(s) 969
FalI AAGNNNNNCTT 4 cut(s) 2112, 2144, 2240, 2272
FaqI GGGAC 1 cut(s) 1557
FauI CCCGC 1 cut(s) 719
FauNDI CATATG 1 cut(s) 3430
FbaI TGATCA 5 cut(s) 10, 252, 396, 642, 1915
FriOI GRGCYC 1 cut(s) 3044
FspBI CTAG 7 cut(s) 1242, 1547, 2177, 2238, 2636, 3093, 3626
GlaI GCGC 3 cut(s) 214, 1666, 2340
HaeII RGCGCY 1 cut(s) 1668
HaeIII GGCC 5 cut(s) 542, 1401, 1508, 1590, 1927
HapII CCGG 6 cut(s) 402, 1202, 2055, 2117, 3073, 3105
HgaI GACGC 1 cut(s) 771
HhaI GCGC 3 cut(s) 215, 1667, 2341
Hin1I GRCGYC 1 cut(s) 978
Hin6I GCGC 3 cut(s) 213, 1665, 2339
HinP1I GCGC 3 cut(s) 213, 1665, 2339
HincII GTYRAC 1 cut(s) 1723
HindII GTYRAC 1 cut(s) 1723
HindIII AAGCTT 2 cut(s) 155, 837
HinfI GANTC 8 cut(s) 173, 799, 1679, 2285, 2394, 3302, 3656, 3777
HpaI GTTAAC 1 cut(s) 1723
HpaII CCGG 6 cut(s) 402, 1202, 2055, 2117, 3073, 3105
HphI GGTGA 9 cut(s) 391, 530, 622, 637, 1346, 1574, 3391, 3551, 3778
Hpy166II GTNNAC 6 cut(s) 343, 1565, 1723, 2471, 3512, 3566
Hpy8I GTNNAC 6 cut(s) 343, 1565, 1723, 2471, 3512, 3566
HpyAV CCTTC 6 cut(s) 2263, 2410, 2801, 3121, 3434, 3598
HpyCH4IV ACGT 1 cut(s) 978
HpySE526I ACGT 1 cut(s) 978
Hsp92I GRCGYC 1 cut(s) 978
HspAI GCGC 3 cut(s) 213, 1665, 2339
Kpn2I TCCGGA 2 cut(s) 2116, 3104
Ksp22I TGATCA 5 cut(s) 10, 252, 396, 642, 1915
KspAI GTTAAC 1 cut(s) 1723
KspI CCGCGG 2 cut(s) 715, 1156
LmnI GCTCC 6 cut(s) 737, 2047, 2077, 2280, 2927, 3388
MaeI CTAG 7 cut(s) 1242, 1547, 2177, 2238, 2636, 3093, 3626
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 4 cut(s) 1087, 2015, 2050, 3308
MboII GAAGA 5 cut(s) 1639, 1950, 2609, 2717, 2863
MfeI CAATTG 5 cut(s) 216, 759, 1779, 2562, 2751
MflI RGATCY 4 cut(s) 1149, 1840, 1967, 3196
MhlI GDGCHC 8 cut(s) 531, 1760, 2044, 2460, 2473, 2917, 3044, 3646
MlsI TGGCCA 1 cut(s) 1508
MluNI TGGCCA 1 cut(s) 1508
MlyI GAGTC 2 cut(s) 2279, 3786
MmeI TCCRAC 7 cut(s) 6, 715, 1246, 2500, 2905, 3220, 3577
Mox20I TGGCCA 1 cut(s) 1508
Mph1103I ATGCAT 4 cut(s) 922, 2550, 2554, 2896
MroI TCCGGA 2 cut(s) 2116, 3104
MscI TGGCCA 1 cut(s) 1508
MslI CAYNNNNRTG 6 cut(s) 986, 1036, 2426, 2463, 3522, 3858
Msp20I TGGCCA 1 cut(s) 1508
MspA1I CMGCKG 4 cut(s) 714, 1155, 2987, 3349
MspI CCGG 6 cut(s) 402, 1202, 2055, 2117, 3073, 3105
MspR9I CCNGG 5 cut(s) 323, 1328, 2138, 3194, 3386
MunI CAATTG 5 cut(s) 216, 759, 1779, 2562, 2751
MvaI CCWGG 5 cut(s) 323, 1328, 2138, 3194, 3386
MvnI CGCG 3 cut(s) 714, 1155, 1797
NcoI CCATGG 2 cut(s) 177, 543
NdeI CATATG 1 cut(s) 3430
NlaIV GGNNCC 7 cut(s) 1416, 1589, 1842, 3010, 3390, 3551, 3609
NmeAIII GCCGAG 1 cut(s) 2479
NmuCI GTSAC 3 cut(s) 1087, 2015, 3308
NsiI ATGCAT 4 cut(s) 922, 2550, 2554, 2896
NspI RCATGY 4 cut(s) 2552, 2898, 3152, 3857
OliI CACNNNNGTG 1 cut(s) 2463
PaeI GCATGC 2 cut(s) 2552, 2898
PaeR7I CTCGAG 1 cut(s) 2461
PagI TCATGA 3 cut(s) 639, 681, 1918
PceI AGGCCT 1 cut(s) 1401
PfeI GAWTC 6 cut(s) 173, 799, 1679, 2394, 3302, 3656
PflFI GACNNNGTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 3192
PinAI ACCGGT 1 cut(s) 2054
PleI GAGTC 2 cut(s) 2279, 3785
PpsI GAGTC 2 cut(s) 2279, 3785
PpuMI RGGWCCY 2 cut(s) 2665, 2810
PshAI GACNNNNGTC 1 cut(s) 1733
PsiI TTATAA 2 cut(s) 1077, 1868
Psp124BI GAGCTC 1 cut(s) 3044
Psp5II RGGWCCY 2 cut(s) 2665, 2810
Psp6I CCWGG 5 cut(s) 321, 1326, 2136, 3192, 3384
PspGI CCWGG 5 cut(s) 321, 1326, 2136, 3192, 3384
PspN4I GGNNCC 7 cut(s) 1416, 1589, 1842, 3010, 3390, 3551, 3609
PspPI GGNCC 5 cut(s) 1588, 1817, 2665, 2810, 3550
PspPPI RGGWCCY 2 cut(s) 2665, 2810
PspXI VCTCGAGB 1 cut(s) 2461
PstI CTGCAG 7 cut(s) 914, 1060, 1072, 2080, 2194, 3285, 3475
PstNI CAGNNNCTG 2 cut(s) 2084, 3199
PsuI RGATCY 4 cut(s) 1149, 1840, 1967, 3196
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 2987, 3349
RsaI GTAC 8 cut(s) 144, 818, 889, 965, 2169, 2792, 3183, 3328
RsaNI GTAC 8 cut(s) 143, 817, 888, 964, 2168, 2791, 3182, 3327
RseI CAYNNNNRTG 6 cut(s) 986, 1036, 2426, 2463, 3522, 3858
SacI GAGCTC 1 cut(s) 3044
SacII CCGCGG 2 cut(s) 715, 1156
Sau96I GGNCC 5 cut(s) 1588, 1817, 2665, 2810, 3550
ScaI AGTACT 1 cut(s) 2169
SchI GAGTC 2 cut(s) 2279, 3786
ScrFI CCNGG 5 cut(s) 323, 1328, 2138, 3194, 3386
SduI GDGCHC 8 cut(s) 531, 1760, 2044, 2460, 2473, 2917, 3044, 3646
Sfr274I CTCGAG 1 cut(s) 2461
Sfr303I CCGCGG 2 cut(s) 715, 1156
SgrBI CCGCGG 2 cut(s) 715, 1156
SinI GGWCC 4 cut(s) 1817, 2665, 2810, 3550
SlaI CTCGAG 1 cut(s) 2461
SmiMI CAYNNNNRTG 6 cut(s) 986, 1036, 2426, 2463, 3522, 3858
SmlI CTYRAG 3 cut(s) 1753, 1939, 2461
SmoI CTYRAG 3 cut(s) 1753, 1939, 2461
SphI GCATGC 2 cut(s) 2552, 2898
SseBI AGGCCT 1 cut(s) 1401
SsiI CCGC 8 cut(s) 712, 714, 1153, 1155, 1275, 1797, 2134, 3249
SspI AATATT 4 cut(s) 1215, 1450, 3057, 3189
SspMI CTAG 7 cut(s) 1242, 1547, 2177, 2238, 2636, 3093, 3626
SstI GAGCTC 1 cut(s) 3044
StuI AGGCCT 1 cut(s) 1401
StyD4I CCNGG 5 cut(s) 321, 1326, 2136, 3192, 3384
StyI CCWWGG 3 cut(s) 177, 543, 615
TaiI ACGT 1 cut(s) 981
TaqI TCGA 6 cut(s) 1235, 2102, 2462, 2661, 3688, 3703
TatI WGTACW 2 cut(s) 816, 2167
TauI GCSGC 1 cut(s) 2136
TfiI GAWTC 6 cut(s) 173, 799, 1679, 2394, 3302, 3656
TscAI CASTG 9 cut(s) 1012, 1767, 2352, 3000, 3273, 3646, 3687, 3717, 3768
TseFI GTSAC 3 cut(s) 1087, 2015, 3308
Tsp45I GTSAC 3 cut(s) 1087, 2015, 3308
TspDTI ATGAA 9 cut(s) 1513, 1668, 1935, 2463, 2718, 3490, 3617, 3645, 3816
TspRI CASTG 9 cut(s) 1012, 1767, 2352, 3000, 3273, 3646, 3687, 3717, 3768
Tth111I GACNNNGTC 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 621
VneI GTGCAC 1 cut(s) 2469
VpaK11BI GGWCC 4 cut(s) 1817, 2665, 2810, 3550
XagI CCTNNNNNAGG 2 cut(s) 2634, 3303
XapI RAATTY 6 cut(s) 80, 1520, 1638, 1932, 3121, 3140
XceI RCATGY 4 cut(s) 2552, 2898, 3152, 3857
XcmI CCANNNNNNNNNTGG 2 cut(s) 2731, 3560
XhoI CTCGAG 1 cut(s) 2461
XspI CTAG 7 cut(s) 1242, 1547, 2177, 2238, 2636, 3093, 3626
ZraI GACGTC 1 cut(s) 979
ZrmI AGTACT 1 cut(s) 2169
Zsp2I ATGCAT 4 cut(s) 922, 2550, 2554, 2896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.