Rw3G000600

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000116
Physical Location & Seq
Reverse (-)
497011 .. 503028
6018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000600.1

Sequence Viewer

Length: 3822 bp
ATGGATGAAGATGAAGCACCACCATCAGAAAGCAAAGCGGAAAAAGCAAACAGAAGCTGTAGCATCACTGAGATACAGGAAGACTCAAACAAGAAGACCAAAGGAAATGAGACCGTTCCATTTCTCAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTATTGATGACCATCGGCACAGTTGGTGCCATTGGGAATGGTTTGTGTATGCCCATTATGACTATACTCTTTGGCCAACTGACTGATTCTTTTGGATATAACTACAATAGCAAAAACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTGTACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGGTTGGAAAGTTTTTACAACTAATATCGACATTCATCGGAGGCCTTGTCATAGCATTCATCAAAGGCTGGCTTCTAACCCTCGTCCTGATGTCCACTATTCCATTTCTTGTGGCAGCCGGAGCAATAATGTCCATTATCATAGTCAAAATGGCTTCCCGAGGACAAAATGCCTATGCGAAAGCTGCAAGTGTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCATCATTTACCGGAGAGACACAAGCTATAACAAACTATAAGAAATATCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTGGGTTTTGGCATGTTTATGTTGGTTATGTTATCCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAACGAGGATATAAAGGAGGAGCTGTGGTCAATGTGATTGTTGCTGTGCTGGCTGGTTCCATGTCTCTAGGCCAGGTATCTCCCTGTATGAGTGCATTTGCTGCTGGTCAGGCTGCAGCCTTTAAGATGTTTGAGACTATAAAGAGGAAACCAGAGATAGATGCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGACATAGAGCTGAGGGATATTTACTTCAGTTATCCAACCAGAAAAAACGAACAAATATTCCAAGGATTGACTCTGAGTATCCCTAGTGGCACAACTACAGCTTTGGTTGGGCAAAGTGGAAGCGGAAAGTCGACAGTGATCTGCCTGATAGAGAGATTCTATGATCCATGGGCTGGTGAGGTTCTCGTAGATGGTATCAACCTTAAAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTAGTCAGCCAGGAACCGGTGTTGTTTGCATCGAGCATCCGGGACAATATTTTATATGGAAAGGATGGTGCAACTTCTGAAGAGATAAGAGCAGCATTAGTACTTGCAAATGCTGCTAAGTTTATTGACAAATTGCCTCAGGGGCTGGACACCATGGTTGGGGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGAGGGTTGCCATAGCTCGAGCAGTTCTTAAAGACCCGCGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACTGAGCTAATTGTACAAGATGCATTGGACCGAATTATGGTCAATCGAACTACTCTCATTGTTGCACATCGTTTGAGCACGGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGATTGAGAAAGGTCCACACGCGGAACTAGTTAGGGATCCTGATGGAGCCTACTCTCAGCTTATACACTTGCAAGAGTTAAGTGAAGACACAGAACAAGCTGCAGACCATCAAACAACGTCAGAAATCAGTAAAAAAAAATCATTGCAAAGATCCTTAAGTCATGATTCATCCGGAGCAGGAAGTAGCAGCCGCCACTCATTCAAACTACCATTCGGATTTCCCACAGGACTTGAGGTAGTAGATATTGTTACAAAAGAACCAGAATCCCTTACAAAAGGTATGCAACAATCTCCAAAGGCTCCTATCCGCCGCCTTGCCTACCTTAACAAGCCAGAGATTCCAGTGCTAGTAATTGGAGCTACAGCTGCAATAGCCAATGGTGTGATATTTCCAGTTGTTGGTCTAATAATTTCCAGTGCCATCAAAACATTATATGAACCACCACATCAACTCAAAAAGGATTCTAAGTTTTGGGCACTAATGTATGTGACCCTTGGTTTGGCTTCCTTACTGGTGATTCCAGTAAGATCATACTTCTTTTCTGTGGCTGGATGCAAGCTAATTGAACGTATTAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGATTGGTTGGTTTGATGAGCCTCGGAGTGGCGAAATTGGTGCAAAGCTCTCGGCAAATGCTGCCACAGTGCGCTCCCTAGTTGGTGATGCACTTGCTCAGCTGATTGGAAATATTGCATCGGCAGTTGCCGGTTTAGTGATTGCCTTTGTTGCCTGTTGGCAGCTGGCATTTATTGTCCTGGTATTGTTCCCTCTTATTGGTGTCACAGGATATATGGAATTAAAATTTATAAAAGGGTTCAGCGCAGATTCAAAGATGATGTATGAGGAAGCAAGCCAGGTTGCTACCGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGCGCCGAAGAGAAGGTGGTGCAACAATACAACACAAAATGTGAAGGCCCTATGAGGACAGGGATAAGGCAAGGTATTATCAGTGGCATGGGATTCGGATTATCATTCTTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTATGCAGGAGCTCAACTTGTGGTGCATGGCAAAACAACGTTCTTAGATGTTTTTCGGGTTTTCTTCTCTCTAACTATGGCTGCTATGACGATTTCTCAATCGAGTTCCTTAGCTCCTGATTCATCTAAAGCCAATGCTGCTACTGCTTCTATCTTTGCCATAATAGACCAGGAGTCAAAGATTGATCCGAGTGATGAGTCTGGGATGACAATGGACAATGTAAAGGGAGATATTGAGCTTCGTAATGTATGCTTCAGGTATCCGTCCAGGCCAGACGTTCAGATTTTTCAAGACCTCAACCTAGTTATTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACCGTGATCTCACTGTTGCAAAGATTTTATGATCCTAACTCGGGTCACATTACACTCGATGGTGTTGAAATTTGGAAGTTCCAATTGAAGTGGCTGAGACAACAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATTCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCAACAGAAGCTGAAATCCTGGCTGCATCCGAGTCTGCCAATGCCCACAATTTCATTAGTGGCTTACAAGAGGGCTATGACACCATAGTGGGGGAACGAGGAGTCCAATTGTCAGGTGGACAGAAGCAACGTGTAGCGATTGCGCGTGCTATTGTTAAAAGCCCCAAGATCTTACTACTAGATGAGGCTACCAGTGCACTAGATGCTGAATCTGAGAAAGTAGTACAAGATGCATTAGACCTTGTCATGCTGAATCGGACAACAGTTGTGGTGGCACATAGATTATCAACAATCAGAAATGCAAACGTAATTGCAGTTGTCAGAGACGGAGCTGTAGTAGAGAAAGGAAAGCATGAGACTTTGATTAGCGTCAAGGATGGTTTCTATGCCTCCTTAGTTGCATTACACAATACACATCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1273

Amino Acids

137.82

Weight (kDa)

6.64

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 57 - 329 2.7e-57 ABC transporter transmembrane region
ABC_tran PF00005 398 - 546 1e-31 ABC transporter
ABC_membrane PF00664 710 - 980 3.2e-52 ABC transporter transmembrane region
ABC_tran PF00005 1048 - 1197 5.8e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2618
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 2 cut(s) 1304, 2177
AccI GTMKAC 3 cut(s) 315, 1262, 2838
AccII CGCG 3 cut(s) 1609, 1799, 3541
AccIII TCCGGA 1 cut(s) 1949
AciI CCGC 7 cut(s) 38, 1254, 1607, 1799, 1969, 2086, 2089
AclI AACGTT 1 cut(s) 2891
AclWI GGATC 8 cut(s) 1289, 1364, 1808, 1821, 1923, 3032, 3239, 3325
AcoI YGGCCR 2 cut(s) 232, 369
AcsI RAATTY 2 cut(s) 2612, 3282
AcuI CTGAAG 3 cut(s) 1141, 1473, 3091
AfaI GTAC 4 cut(s) 410, 1476, 1668, 3621
AflII CTTAAG 1 cut(s) 1933
AflIII ACRYGT 1 cut(s) 3526
AgeI ACCGGT 1 cut(s) 1390
AgsI TTSAA 8 cut(s) 150, 725, 1981, 2345, 2640, 3143, 3281, 3301
AhdI GACNNNNNGTC 1 cut(s) 3025
AhlI ACTAGT 1 cut(s) 1804
AjnI CCWGG 9 cut(s) 318, 351, 999, 1383, 2565, 2664, 3021, 3119, 3414
AleI CACNNNNGTG 2 cut(s) 2372, 3482
AloI GAACNNNNNNTCC 4 cut(s) 1173, 1205, 3483, 3515
Alw21I GWGCWC 4 cut(s) 1642, 1733, 2866, 3595
Alw26I GTCTC 8 cut(s) 104, 304, 764, 996, 1055, 3304, 3714, 3746
Alw44I GTGCAC 2 cut(s) 1638, 3591
AlwI GGATC 8 cut(s) 1289, 1364, 1808, 1821, 1923, 3032, 3239, 3325
AlwNI CAGNNNCTG 4 cut(s) 57, 1519, 1655, 3407
Ama87I CYCGRG 3 cut(s) 684, 1587, 3253
Aor13HI TCCGGA 1 cut(s) 1949
AoxI GGCC 6 cut(s) 232, 369, 568, 997, 2758, 3122
ApaLI GTGCAC 2 cut(s) 1638, 3591
ApoI RAATTY 2 cut(s) 2612, 3282
ArsI GACNNNNNNTTYG 2 cut(s) 2260, 2292
AsiGI ACCGGT 1 cut(s) 1390
AspLEI GCGC 4 cut(s) 2460, 2633, 2717, 3541
AspS9I GGNCC 3 cut(s) 1681, 1790, 2759
AsuC2I CCSGG 1 cut(s) 1415
AsuHPI GGTGA 7 cut(s) 503, 1142, 1319, 1747, 1789, 2305, 2483
AvaI CYCGRG 3 cut(s) 684, 1587, 3253
AvaII GGWCC 2 cut(s) 1681, 1790
AxyI CCTNAGG 1 cut(s) 1512
BaeGI GKGCMC 3 cut(s) 1642, 2257, 3595
BalI TGGCCA 2 cut(s) 234, 371
BamHI GGATCC 1 cut(s) 1813
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 2866
BbsI GAAGAC 3 cut(s) 87, 101, 1869
Bbv12I GWGCWC 4 cut(s) 1642, 1733, 2866, 3595
BbvCI CCTCAGC 1 cut(s) 1142
BcgI CGANNNNNNTGC 6 cut(s) 2408, 2418, 2442, 2452, 2788, 2822
BciT130I CCWGG 9 cut(s) 320, 353, 1001, 1385, 2567, 2666, 3023, 3121, 3416
BciVI GTATCC 2 cut(s) 1220, 3123
BcnI CCSGG 1 cut(s) 1415
BcoDI GTCTC 8 cut(s) 104, 304, 764, 996, 1055, 3304, 3714, 3746
BcuI ACTAGT 1 cut(s) 1804
BfmI CTRYAG 6 cut(s) 58, 1041, 1227, 1878, 2139, 3729
BfrI CTTAAG 1 cut(s) 1933
BfuI GTATCC 2 cut(s) 1220, 3123
BglI GCCNNNNNGGC 1 cut(s) 1516
BglII AGATCT 1 cut(s) 3564
BlpI GCTNAGC 1 cut(s) 2484
BmcAI AGTACT 1 cut(s) 1476
Bme18I GGWCC 2 cut(s) 1681, 1790
BmeRI GACNNNNNGTC 1 cut(s) 3025
BmeT110I CYCGRG 3 cut(s) 684, 1587, 3253
BmgT120I GGNCC 3 cut(s) 1681, 1790, 2759
BmiI GGNNCC 6 cut(s) 187, 985, 1389, 1815, 1825, 2079
BpiI GAAGAC 3 cut(s) 87, 101, 1869
BpmI CTGGAG 2 cut(s) 335, 486
Bpu10I CCTNAGC 2 cut(s) 1142, 2962
Bpu1102I GCTNAGC 1 cut(s) 2484
BpuEI CTTGAG 2 cut(s) 110, 2030
BpuMI CCSGG 1 cut(s) 1415
BsaBI GATNNNNATC 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 104, 304
BsaJI CCNNGG 8 cut(s) 294, 685, 1192, 1298, 1527, 2272, 2408, 3183
BsaWI WCCGGW 3 cut(s) 764, 1390, 1949
Bse118I RCCGGY 2 cut(s) 1390, 2516
Bse21I CCTNAGG 1 cut(s) 1512
Bse3DI GCAATG 4 cut(s) 522, 1752, 1919, 3372
Bse8I GATNNNNATC 1 cut(s) 170
BseAI TCCGGA 1 cut(s) 1949
BseBI CCWGG 9 cut(s) 320, 353, 1001, 1385, 2567, 2666, 3023, 3121, 3416
BseDI CCNNGG 8 cut(s) 294, 685, 1192, 1298, 1527, 2272, 2408, 3183
BseJI GATNNNNATC 1 cut(s) 170
BseMI GCAATG 4 cut(s) 522, 1752, 1919, 3372
BseRI GAGGAG 2 cut(s) 960, 3510
BseSI GKGCMC 3 cut(s) 1642, 2257, 3595
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 3 cut(s) 1609, 1799, 3541
BshFI GGCC 6 cut(s) 234, 371, 570, 999, 2760, 3124
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 1390
BsiHKAI GWGCWC 4 cut(s) 1642, 1733, 2866, 3595
BsiHKCI CYCGRG 3 cut(s) 684, 1587, 3253
BsiSI CCGG 7 cut(s) 645, 765, 846, 1391, 1414, 1950, 2517
BslFI GGGAC 2 cut(s) 1430, 3336
BsmAI GTCTC 8 cut(s) 104, 304, 764, 996, 1055, 3304, 3714, 3746
BsmBI CGTCTC 1 cut(s) 3714
BsmFI GGGAC 2 cut(s) 1430, 3336
BsmI GAATGC 3 cut(s) 344, 581, 1747
BsnI GGCC 6 cut(s) 234, 371, 570, 999, 2760, 3124
Bso31I GGTCTC 2 cut(s) 104, 304
BsoBI CYCGRG 3 cut(s) 684, 1587, 3253
Bsp1286I GDGCHC 5 cut(s) 1642, 1733, 2257, 2866, 3595
Bsp13I TCCGGA 1 cut(s) 1949
Bsp1407I TGTACA 1 cut(s) 1666
Bsp1720I GCTNAGC 1 cut(s) 2484
Bsp19I CCATGG 2 cut(s) 1298, 1527
BspACI CCGC 7 cut(s) 38, 1254, 1607, 1799, 1969, 2086, 2089
BspANI GGCC 6 cut(s) 234, 371, 570, 999, 2760, 3124
BspEI TCCGGA 1 cut(s) 1949
BspFNI CGCG 3 cut(s) 1609, 1799, 3541
BspHI TCATGA 2 cut(s) 829, 1939
BspLI GGNNCC 6 cut(s) 187, 985, 1389, 1815, 1825, 2079
BspMAI CTGCAG 2 cut(s) 1045, 1882
BspPI GGATC 8 cut(s) 1289, 1364, 1808, 1821, 1923, 3032, 3239, 3325
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 1933
BspTNI GGTCTC 2 cut(s) 104, 304
BsrDI GCAATG 4 cut(s) 522, 1752, 1919, 3372
BsrFI RCCGGY 2 cut(s) 1390, 2516
BsrGI TGTACA 1 cut(s) 1666
BssAI RCCGGY 2 cut(s) 1390, 2516
BssECI CCNNGG 8 cut(s) 294, 685, 1192, 1298, 1527, 2272, 2408, 3183
BssT1I CCWWGG 6 cut(s) 294, 1192, 1298, 1527, 2272, 3183
Bst2UI CCWGG 9 cut(s) 320, 353, 1001, 1385, 2567, 2666, 3023, 3121, 3416
Bst6I CTCTTC 2 cut(s) 1449, 2715
BstAFI CTTAAG 1 cut(s) 1933
BstAPI GCANNNNNTGC 5 cut(s) 1028, 1487, 1646, 2447, 3599
BstAUI TGTACA 1 cut(s) 1666
BstC8I GCNNGC 8 cut(s) 361, 394, 596, 978, 2336, 2553, 2662, 3543
BstDSI CCRYGG 2 cut(s) 1298, 1527
BstFNI CGCG 3 cut(s) 1609, 1799, 3541
BstHHI GCGC 4 cut(s) 2460, 2633, 2717, 3541
BstMAI GTCTC 8 cut(s) 104, 304, 764, 996, 1055, 3304, 3714, 3746
BstNI CCWGG 9 cut(s) 320, 353, 1001, 1385, 2567, 2666, 3023, 3121, 3416
BstNSI RCATGY 1 cut(s) 865
BstSFI CTRYAG 6 cut(s) 58, 1041, 1227, 1878, 2139, 3729
BstSLI GKGCMC 3 cut(s) 1642, 2257, 3595
BstUI CGCG 3 cut(s) 1609, 1799, 3541
BstV2I GAAGAC 3 cut(s) 87, 101, 1869
BstX2I RGATCY 3 cut(s) 1813, 1928, 3564
BstYI RGATCY 3 cut(s) 1813, 1928, 3564
Bsu36I CCTNAGG 1 cut(s) 1512
BsuI GTATCC 2 cut(s) 1220, 3123
BsuRI GGCC 6 cut(s) 234, 371, 570, 999, 2760, 3124
BtgI CCRYGG 2 cut(s) 1298, 1527
Cac8I GCNNGC 8 cut(s) 361, 394, 596, 978, 2336, 2553, 2662, 3543
CaiI CAGNNNCTG 4 cut(s) 57, 1519, 1655, 3407
CciI TCATGA 2 cut(s) 829, 1939
CfoI GCGC 4 cut(s) 2460, 2633, 2717, 3541
Cfr10I RCCGGY 2 cut(s) 1390, 2516
Cfr13I GGNCC 3 cut(s) 1681, 1790, 2759
CseI GACGC 1 cut(s) 3754
Csp6I GTAC 4 cut(s) 409, 1475, 1667, 3620
CspAI ACCGGT 1 cut(s) 1390
CspCI CAANNNNNGTGG 6 cut(s) 1990, 2025, 3284, 3319, 3645, 3680
CviQI GTAC 4 cut(s) 409, 1475, 1667, 3620
DriI GACNNNNNGTC 1 cut(s) 3025
EaeI YGGCCR 2 cut(s) 232, 369
Eam1104I CTCTTC 2 cut(s) 1449, 2715
Eam1105I GACNNNNNGTC 1 cut(s) 3025
EarI CTCTTC 2 cut(s) 1449, 2715
EciI GGCGGA 1 cut(s) 2075
Ecl136II GAGCTC 1 cut(s) 2864
Eco130I CCWWGG 6 cut(s) 294, 1192, 1298, 1527, 2272, 3183
Eco147I AGGCCT 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 2866
Eco31I GGTCTC 2 cut(s) 104, 304
Eco32I GATATC 2 cut(s) 157, 1750
Eco47I GGWCC 2 cut(s) 1681, 1790
Eco53kI GAGCTC 1 cut(s) 2864
Eco57I CTGAAG 3 cut(s) 1141, 1473, 3091
Eco81I CCTNAGG 1 cut(s) 1512
Eco88I CYCGRG 3 cut(s) 684, 1587, 3253
EcoICRI GAGCTC 1 cut(s) 2864
EcoO109I RGGNCCY 1 cut(s) 2759
EcoRII CCWGG 9 cut(s) 318, 351, 999, 1383, 2565, 2664, 3021, 3119, 3414
EcoRV GATATC 2 cut(s) 157, 1750
EcoT14I CCWWGG 6 cut(s) 294, 1192, 1298, 1527, 2272, 3183
EcoT22I ATGCAT 2 cut(s) 1678, 3631
EcoT38I GRGCYC 1 cut(s) 2866
ErhI CCWWGG 6 cut(s) 294, 1192, 1298, 1527, 2272, 3183
Esp3I CGTCTC 1 cut(s) 3714
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 2 cut(s) 1430, 3336
FauI CCCGC 1 cut(s) 1614
FauNDI CATATG 1 cut(s) 3379
FblI GTMKAC 3 cut(s) 315, 1262, 2838
FriOI GRGCYC 1 cut(s) 2866
GlaI GCGC 4 cut(s) 2459, 2632, 2716, 3540
GsuI CTGGAG 2 cut(s) 335, 486
HaeIII GGCC 6 cut(s) 234, 371, 570, 999, 2760, 3124
HapII CCGG 7 cut(s) 645, 765, 846, 1391, 1414, 1950, 2517
HgaI GACGC 1 cut(s) 3754
HhaI GCGC 4 cut(s) 2460, 2633, 2717, 3541
Hin6I GCGC 4 cut(s) 2458, 2631, 2715, 3539
HinP1I GCGC 4 cut(s) 2458, 2631, 2715, 3539
HincII GTYRAC 1 cut(s) 1263
HindII GTYRAC 1 cut(s) 1263
HpaII CCGG 7 cut(s) 645, 765, 846, 1391, 1414, 1950, 2517
HphI GGTGA 7 cut(s) 503, 1142, 1319, 1747, 1789, 2305, 2483
HpyAV CCTTC 5 cut(s) 520, 827, 2719, 2750, 3383
HpyCH4IV ACGT 6 cut(s) 1895, 2347, 2891, 3129, 3526, 3702
HpySE526I ACGT 6 cut(s) 1895, 2347, 2891, 3129, 3526, 3702
HspAI GCGC 4 cut(s) 2458, 2631, 2715, 3539
Kpn2I TCCGGA 1 cut(s) 1949
MaeII ACGT 6 cut(s) 1895, 2347, 2891, 3129, 3526, 3702
MaeIII GTNAC 5 cut(s) 1130, 2026, 2266, 2590, 3257
MfeI CAATTG 2 cut(s) 3296, 3503
MflI RGATCY 3 cut(s) 1813, 1928, 3564
MhlI GDGCHC 5 cut(s) 1642, 1733, 2257, 2866, 3595
MlsI TGGCCA 2 cut(s) 234, 371
MluNI TGGCCA 2 cut(s) 234, 371
MlyI GAGTC 6 cut(s) 77, 1195, 3035, 3059, 3437, 3507
MmeI TCCRAC 3 cut(s) 511, 1190, 3169
Mox20I TGGCCA 2 cut(s) 234, 371
Mph1103I ATGCAT 2 cut(s) 1678, 3631
MroI TCCGGA 1 cut(s) 1949
MscI TGGCCA 2 cut(s) 234, 371
MslI CAYNNNNRTG 3 cut(s) 866, 2372, 3482
Msp20I TGGCCA 2 cut(s) 234, 371
MspA1I CMGCKG 4 cut(s) 1552, 2144, 2488, 2551
MspCI CTTAAG 1 cut(s) 1933
MspI CCGG 7 cut(s) 645, 765, 846, 1391, 1414, 1950, 2517
MunI CAATTG 2 cut(s) 3296, 3503
Mva1269I GAATGC 3 cut(s) 344, 581, 1747
MvaI CCWGG 9 cut(s) 320, 353, 1001, 1385, 2567, 2666, 3023, 3121, 3416
MvnI CGCG 3 cut(s) 1609, 1799, 3541
NciI CCSGG 1 cut(s) 1415
NcoI CCATGG 2 cut(s) 1298, 1527
NdeI CATATG 1 cut(s) 3379
NlaIV GGNNCC 6 cut(s) 187, 985, 1389, 1815, 1825, 2079
NmeAIII GCCGAG 1 cut(s) 2417
NmuCI GTSAC 4 cut(s) 1130, 2266, 2590, 3257
NsiI ATGCAT 2 cut(s) 1678, 3631
NspI RCATGY 1 cut(s) 865
OliI CACNNNNGTG 2 cut(s) 2372, 3482
PaeR7I CTCGAG 1 cut(s) 1587
PagI TCATGA 2 cut(s) 829, 1939
PceI AGGCCT 1 cut(s) 570
PctI GAATGC 3 cut(s) 344, 581, 1747
PflFI GACNNNGTC 1 cut(s) 3638
PflMI CCANNNNNTGG 2 cut(s) 1304, 2177
PfoI TCCNGGA 1 cut(s) 1413
PinAI ACCGGT 1 cut(s) 1390
PleI GAGTC 6 cut(s) 77, 1195, 3034, 3058, 3436, 3506
PpsI GAGTC 6 cut(s) 77, 1195, 3034, 3058, 3436, 3506
PsiI TTATAA 1 cut(s) 2618
Psp124BI GAGCTC 1 cut(s) 2866
Psp1406I AACGTT 1 cut(s) 2891
Psp6I CCWGG 9 cut(s) 318, 351, 999, 1383, 2565, 2664, 3021, 3119, 3414
PspGI CCWGG 9 cut(s) 318, 351, 999, 1383, 2565, 2664, 3021, 3119, 3414
PspN4I GGNNCC 6 cut(s) 187, 985, 1389, 1815, 1825, 2079
PspPI GGNCC 3 cut(s) 1681, 1790, 2759
PspXI VCTCGAGB 1 cut(s) 1587
PstI CTGCAG 2 cut(s) 1045, 1882
PstNI CAGNNNCTG 4 cut(s) 57, 1519, 1655, 3407
PsuI RGATCY 3 cut(s) 1813, 1928, 3564
PsyI GACNNNGTC 1 cut(s) 3638
PvuII CAGCTG 4 cut(s) 1552, 2144, 2488, 2551
RsaI GTAC 4 cut(s) 410, 1476, 1668, 3621
RsaNI GTAC 4 cut(s) 409, 1475, 1667, 3620
RseI CAYNNNNRTG 3 cut(s) 866, 2372, 3482
SacI GAGCTC 1 cut(s) 2866
SalI GTCGAC 1 cut(s) 1261
Sau96I GGNCC 3 cut(s) 1681, 1790, 2759
ScaI AGTACT 1 cut(s) 1476
SchI GAGTC 6 cut(s) 77, 1195, 3035, 3059, 3437, 3507
SduI GDGCHC 5 cut(s) 1642, 1733, 2257, 2866, 3595
SfcI CTRYAG 6 cut(s) 58, 1041, 1227, 1878, 2139, 3729
Sfr274I CTCGAG 1 cut(s) 1587
SinI GGWCC 2 cut(s) 1681, 1790
SlaI CTCGAG 1 cut(s) 1587
SmiMI CAYNNNNRTG 3 cut(s) 866, 2372, 3482
SmlI CTYRAG 4 cut(s) 125, 1587, 1933, 2009
SmoI CTYRAG 4 cut(s) 125, 1587, 1933, 2009
SpeI ACTAGT 1 cut(s) 1804
SseBI AGGCCT 1 cut(s) 570
SsiI CCGC 7 cut(s) 38, 1254, 1607, 1799, 1969, 2086, 2089
SspI AATATT 4 cut(s) 1188, 1423, 1614, 2500
SstI GAGCTC 1 cut(s) 2866
StuI AGGCCT 1 cut(s) 570
StyI CCWWGG 6 cut(s) 294, 1192, 1298, 1527, 2272, 3183
TaiI ACGT 6 cut(s) 1898, 2350, 2894, 3132, 3529, 3705
TaqI TCGA 8 cut(s) 447, 554, 1262, 1406, 1588, 1699, 2954, 3270
TaqII GACCGA 1 cut(s) 1698
TatI WGTACW 3 cut(s) 1474, 1666, 3619
TauI GCSGC 2 cut(s) 1971, 2091
TseFI GTSAC 4 cut(s) 1130, 2266, 2590, 3257
Tsp45I GTSAC 4 cut(s) 1130, 2266, 2590, 3257
TspGWI ACGGA 2 cut(s) 3105, 3738
Tth111I GACNNNGTC 1 cut(s) 3638
Van91I CCANNNNNTGG 2 cut(s) 1304, 2177
Vha464I CTTAAG 1 cut(s) 1933
VneI GTGCAC 2 cut(s) 1638, 3591
VpaK11BI GGWCC 2 cut(s) 1681, 1790
XapI RAATTY 2 cut(s) 2612, 3282
XbaI TCTAGA 1 cut(s) 1621
XceI RCATGY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 2 cut(s) 892, 3509
XhoI CTCGAG 1 cut(s) 1587
XmiI GTMKAC 3 cut(s) 315, 1262, 2838
ZrmI AGTACT 1 cut(s) 1476
Zsp2I ATGCAT 2 cut(s) 1678, 3631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.