Rw0G011850

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00515
Physical Location & Seq
Reverse (-)
38744 .. 44331
5588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011850.1

Sequence Viewer

Length: 3867 bp
ATGGGTGATCAGGAGAATCCTTTGGATGGAGATCACGTGATCAGAGAGGAAGCTGCCGCGTCAAAAAGTCAGTCAGCAGGGCCGGAATCCCAGAATGGACCGGAAAGTAGTAGTGACAAGGAAGATGCAAGCAAGAGCAAGGAGGGTGGCACCAAGGCAGTACCCTTTTTCAAGCTCTTCTCATTTGCTGATTCCATGGATTACTTGTTAATGTCGGTTGGTACGATTGGCGCTATCGGAAATGGAGTGTGTATGCCTCTAATGACCATAATCATGGGAGATGTGATTAATTCTTTTGGAGAATCTGGGAATTCCAATAAAGTGGTTGACACAGTGTCTAAGGTGGCTCTAAAGTATGTCTACTTGGCTTTGGGAGCCGCAGCTGCTTCATTTCTACAGATGTCTTGTTGGATGATCACCGGAGAGAGACAGGCAGCGAGAATAAGATGTTTATACTTGAAAACAATATTGAGGCAAGATGTAAGCTTTTTTGATAAAGAAACTAACACTGGAGAAATTATTGGGAGGATGTCAGGTGATACTGTGCTCATTCAGGAGGCCATGGGAGAGAAGGTAGGAACTTGTATCCAGTTAGTCGCAACATTCTTTGGAGGCTTTATCATAGCCTTCGTTAAGGGATGGCTTCTTACCCTGGTCATGCTTTCTTCTATCCCCGCTCTTGTCATCTCTGGTGCTACCATGAGCATCATCATATCAAAGTTGGCATCTCGTGGACAAGCTGCTTATTCAGCGGGAGCAACTGTGGTTGAGCAGACAATTGGTTCAATAAGAACTGTTGCATCATTTACAGGGGAGAAACAAGCTATAACTAAGTACAACAACTCTATAACTAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTGGCATCTGGGTTGGGTATCGGTTCAGTTATGCTTATTATCTTCTGTAGTTATGCTTTGGCTATATGGTATGGCGGAAAAATGATACTTGAAAAGGGATATAAAGGAGGAGATGTCATGAATGTAGTTTTTGCGGTGTTGACCGGCTCCTTGTCTCTTGGGCAGACATCTCCATGCTTGGCCGCATTTGCTTCTGGGAAAGCTGCAGCTTACAAGATGTTTGAGACAATTAGCAGAAACCCGGAGATAGATGCTTCTGATACTAAAGGGAAGCAATTACAAGATATTAAAGGAGACATAGAACTGAGGGATGTTCATTTTAGTTATCCTGCAAGACCAGATGAACATATATTCCGTGGATTTTCTCTCACAATACCTAGTGGTGCAACTGCTGCTTTGGTAGGAGAGAGCGGAAGTGGTAAATCGACTGTAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATTGACGGTGTCAATCTCAAAGAGTTCCAGCTGAAATGGATCAGGCAGAAAATAGGTCTTGTCAGCCAGGAACCGGTATTGTTTACTTGCAGCATTAGAGATAATATTGGCTATGGGAAGGATGGTGCAACTACTGAAGAGATAAGGGCCGCTGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAACTTCCTCAGGGACTAGATACAATGGTGGGTGAGCATGGAACTCAACTATCTGGGGGCCAAAAGCAGAGAGTTGCTATAGCTCGAGCAATTCTAAAAAACCCAAGAATTCTACTTTTAGATGAAGCTACAAGTGCTCTTGACGCAGAATCTGAGAGAGTTGTGCAGGAGGCACTGGATAGAATTATGGTTAACCGGACTACTGTCATAGTAGCCCATCGCTTGAGCACAGTAAGGAATGCTGATACCATTGCTGTCATACATCGAGGAACAATTGTTGAACAAGGACCACATTCCGAGCTAGTTAAGGATCCTGAGGGAGCATATAGCCAGCTTATAAGATTACAAGAAACAAGAACTGTGTCAGAACAGAAGGGTGTAAATGATCAGGATAGGCCAGATATTTCTTCTGATTCTCGGAGACAGTCAAGTCAAAGATTTTCTTTATTAAGATCCATAAGCCGTGGATCATCTGGAAGAGCAAATAGTAGTCGTCACTCATTCTCAATCTCATATGGTGGTGCACCTACTGCAATCGGCATCCTTGAAACAAATCCTGCTGAACTTGATACTCATGCTCCAGCATCATCTAAAGGGCGTCCAGAAGTCTCACTTGGCCGCCTAGCTGCCCTGAACAAGCCAGAGATCCCAGTGCTGCTTCTTGGTACTTTAGCTGCAGCAGCCAACGGGGTGATCTTACCTGTTTTTGGGATACTAATATCTAGTGTAATCAAGACCTTCTTTGAGCCACCTGACCAACTGAGTAAGGATTCAAAGTTTTGGGCATTAATCTTTGTTGTTCTTGGAGTTGCATCATTCTTGGCACAACCATCAGAAAGAGTTCGATCAAAGTGCTTTGAGAAGGTGGTTTACATGGACGTAGGTTGGTTTGATGAGTCTGATCATTCAAGTGGTGCAATTGGGGCAAGGCTTTCTACAGATGCGGCTTCTCTAAGAGGGTTGGTTGGAGATGCTTTAGGTTTATTGGTTCAGAATTTAGCAACTGCAGTTGCCGGCCTAGTTATTGCTTTCGTAGCAAATTGGCAATTGGCTCTTATAATTCTTGTCCTGCTGCCTCTGTTAGGATTAAGTGGATATTTTCAAGTCAAGTTAATGAAAGGGTTCAGTGCAGATGCAAAGAAAATGTACGAGGACGCAAGCCAAGTAGCCAATGATGCTGTTGGGAGTATTAGAACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATGGAACTGTACCAGAAAAAATGTGATGGTCCTATTAAAAATGGGATAAGACAAGGCTTAGTTAGTGGAATTGGTTTTGGGCTATCGTTCTTTTTCCTATTTTCTGTGTATGCCTGCAGTTTCTACGCTGGAGCCCGACTTGTTGATGCAGGCAAGACAGAATTTTCTGACGTGTTTCGGGTTTTCTTTGCTCTCACTATGACAGCTGTTGGAATATCTCAGTCGAGCTCCCTAGCCCCTGATATAAGTAAAGGAAAGAGTTCTGCTTCTTCCATATTTGCAATTCTTGACGGCAAGTCAAAAATAGACTCTAGTGACGACTCTGGAACTGCAATAGAAAATGTGAAGGGAGATATTGAACTACGCCATGTCAGCTTCAAGTATCCAACTAGACCCAACGTGCCAATCTTCCAGGATCTTTGCTTGACCATTCATCATGGCAAGACGGTTGCTCTGGTTGGAGAAAGTGGTAGTGGGAAGTCGACAGTGATCTCATTGTTGCAGAGATTTTATGACCCTGATTCAGGTCACATTACATTAGATGGAATCGAAATCCAAAAGCTACAACTGAAGTGGTTGAGACAGCAAATGGGGCTGGTGAGCCAAGAGCCTCTGCTGTTTAATGACACTATCCGAGCCAACATTGCATATGGAAAGGATGGGAATGCAACCGAAGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGCCCACAAGTTCATCAGTAGCTTACAACAGGGTTACGATACAGTAGTAGGAGAGCGGGGGGTCCAAATGTCAGGTGGACAGAAGCAAAGGGTGGCAATTGCACGAGCTATTATGAAGGCGCCAAAGATATTACTCCTAGATGAGGCCACCAGTGCACTCGATGCTGAATCTGAACGAGTCGTTCAAGATGCATTGGACAGAGTAATGGTGGATCGAACAACAGTGGTGGTTGCTCATCGGTTATCGACAATCAGAAGTGCAGATTTGATAGCAGTGGTAAAGAATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTGATCAATATCAAGGATGGCACTTATGCTTCTCTGGTAGCATTACATGCAAGTGCCTCTTCTTAG

Protein Analysis

1288

Amino Acids

137.88

Weight (kDa)

6.57

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 73 - 345 2.8e-60 ABC transporter transmembrane region
ABC_tran PF00005 413 - 561 4.9e-34 ABC transporter
ABC_membrane PF00664 735 - 995 1.2e-51 ABC transporter transmembrane region
ABC_tran PF00005 1063 - 1212 7.8e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1886, 2606
AasI GACNNNNNNGTC 1 cut(s) 1977
AccB1I GGYRCC 2 cut(s) 149, 3601
AccB7I CCANNNNNTGG 1 cut(s) 1349
AccBSI CCGCTC 3 cut(s) 677, 1293, 3538
AccI GTMKAC 2 cut(s) 360, 3257
AccII CGCG 1 cut(s) 59
AclWI GGATC 8 cut(s) 1409, 1853, 1866, 1995, 2023, 2188, 3198, 3702
AcoI YGGCCR 2 cut(s) 1062, 2164
AcsI RAATTY 5 cut(s) 310, 1538, 1656, 2542, 2936
AcuI CTGAAG 3 cut(s) 1518, 2784, 3365
AcvI CACGTG 1 cut(s) 37
AcyI GRCGYC 2 cut(s) 2146, 3602
AfaI GTAC 6 cut(s) 162, 223, 836, 2215, 2696, 2786
AfiI CCNNNNNNNGG 7 cut(s) 26, 1349, 1435, 2255, 2630, 3299, 3625
AflIII ACRYGT 1 cut(s) 2946
AgeI ACCGGT 1 cut(s) 1435
AhdI GACNNNNNGTC 2 cut(s) 334, 3070
AjiI CACGTC 1 cut(s) 2947
AjnI CCWGG 3 cut(s) 651, 1428, 3186
AjuI GAANNNNNNNTTGG 2 cut(s) 2145, 2177
AloI GAACNNNNNNTCC 2 cut(s) 1218, 1250
Alw21I GWGCWC 6 cut(s) 549, 1687, 1778, 2074, 3005, 3640
Alw26I GTCTC 8 cut(s) 421, 1041, 1100, 1170, 1963, 2161, 3349, 3791
Alw44I GTGCAC 2 cut(s) 2070, 3636
AlwI GGATC 8 cut(s) 1409, 1853, 1866, 1995, 2023, 2188, 3198, 3702
AlwNI CAGNNNCTG 1 cut(s) 1700
Ama87I CYCGRG 1 cut(s) 1632
AoxI GGCC 9 cut(s) 80, 558, 1062, 1509, 1606, 1943, 2164, 2563, 3627
ApaLI GTGCAC 2 cut(s) 2070, 3636
ApoI RAATTY 5 cut(s) 310, 1538, 1656, 2542, 2936
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AseI ATTAAT 2 cut(s) 288, 2336
AsiGI ACCGGT 1 cut(s) 1435
Asp700I GAANNNNTTC 3 cut(s) 2388, 2669, 3034
AspLEI GCGC 2 cut(s) 233, 3604
AspS9I GGNCC 7 cut(s) 80, 98, 1509, 1606, 1835, 2804, 3544
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 8 cut(s) 17, 409, 548, 1364, 1592, 2251, 2785, 3385
AvaI CYCGRG 1 cut(s) 1632
AvaII GGWCC 4 cut(s) 98, 1835, 2804, 3544
AxyI CCTNAGG 2 cut(s) 1557, 1863
BaeGI GKGCMC 2 cut(s) 2074, 3640
BaeI ACNNNNGTAYC 4 cut(s) 1560, 1593, 3513, 3546
BamHI GGATCC 1 cut(s) 1858
BanI GGYRCC 2 cut(s) 149, 3601
BanII GRGCYC 2 cut(s) 2911, 3005
BarI GAAGNNNNNNTAC 2 cut(s) 2402, 2434
BauI CACGAG 2 cut(s) 729, 3585
BbrPI CACGTG 1 cut(s) 37
Bbv12I GWGCWC 6 cut(s) 549, 1687, 1778, 2074, 3005, 3640
BceAI ACGGC 2 cut(s) 1995, 3082
BcgI CGANNNNNNTGC 2 cut(s) 2382, 2416
BciT130I CCWGG 3 cut(s) 653, 1430, 3188
BciVI GTATCC 3 cut(s) 596, 2253, 3168
BclI TGATCA 6 cut(s) 7, 39, 414, 1933, 2449, 3804
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 8 cut(s) 421, 1041, 1100, 1170, 1963, 2161, 3349, 3791
BfmI CTRYAG 9 cut(s) 395, 928, 1086, 1626, 2223, 2484, 2553, 2890, 3465
BfoI RGCGCY 2 cut(s) 234, 3605
BfuI GTATCC 3 cut(s) 596, 2253, 3168
BlpI GCTNAGC 1 cut(s) 1518
Bme1390I CCNGG 4 cut(s) 653, 1124, 1430, 3188
Bme18I GGWCC 4 cut(s) 98, 1835, 2804, 3544
BmeRI GACNNNNNGTC 2 cut(s) 334, 3070
BmeT110I CYCGRG 1 cut(s) 1632
BmgBI CACGTC 1 cut(s) 2947
BmgT120I GGNCC 7 cut(s) 80, 98, 1509, 1606, 1835, 2804, 3544
BmiI GGNNCC 9 cut(s) 151, 376, 1030, 1434, 1607, 1860, 2908, 3545, 3603
BmrFI CCNGG 4 cut(s) 653, 1124, 1430, 3188
BmrI ACTGGG 1 cut(s) 2192
BmuI ACTGGG 1 cut(s) 2192
BoxI GACNNNNGTC 1 cut(s) 1751
BpmI CTGGAG 3 cut(s) 531, 2112, 2925
Bpu1102I GCTNAGC 1 cut(s) 1518
BpuEI CTTGAG 1 cut(s) 1792
BpuMI CCSGG 1 cut(s) 1124
BsaAI YACGTR 1 cut(s) 37
BsaBI GATNNNNATC 2 cut(s) 30, 3809
BsaHI GRCGYC 2 cut(s) 2146, 3602
BsaJI CCNNGG 6 cut(s) 153, 195, 561, 651, 1237, 2011
BsaWI WCCGGW 4 cut(s) 100, 419, 1435, 1743
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 1349, 1435, 2255, 2630, 3299, 3625
Bse118I RCCGGY 3 cut(s) 1025, 1435, 2561
Bse1I ACTGG 5 cut(s) 514, 589, 1728, 2198, 3633
Bse21I CCTNAGG 2 cut(s) 1557, 1863
Bse3DI GCAATG 3 cut(s) 1797, 3417, 3774
Bse8I GATNNNNATC 2 cut(s) 30, 3809
BseBI CCWGG 3 cut(s) 653, 1430, 3188
BseDI CCNNGG 6 cut(s) 153, 195, 561, 651, 1237, 2011
BseGI GGATG 9 cut(s) 31, 417, 534, 644, 1198, 1489, 2088, 3439, 3823
BseJI GATNNNNATC 2 cut(s) 30, 3809
BseLI CCNNNNNNNGG 7 cut(s) 26, 1349, 1435, 2255, 2630, 3299, 3625
BseMI GCAATG 3 cut(s) 1797, 3417, 3774
BseMII CTCAG 7 cut(s) 1178, 1509, 1571, 1692, 1854, 2300, 3008
BseNI ACTGG 5 cut(s) 514, 589, 1728, 2198, 3633
BseRI GAGGAG 1 cut(s) 1005
BseSI GKGCMC 2 cut(s) 2074, 3640
BsgI GTGCAG 3 cut(s) 1733, 2697, 3762
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 9 cut(s) 82, 560, 1064, 1511, 1608, 1945, 2166, 2565, 3629
BshNI GGYRCC 2 cut(s) 149, 3601
BshTI ACCGGT 1 cut(s) 1435
BsiHKAI GWGCWC 6 cut(s) 549, 1687, 1778, 2074, 3005, 3640
BsiHKCI CYCGRG 1 cut(s) 1632
BsiSI CCGG 8 cut(s) 83, 101, 420, 1026, 1124, 1436, 1744, 2562
BslFI GGGAC 1 cut(s) 1575
BslI CCNNNNNNNGG 7 cut(s) 26, 1349, 1435, 2255, 2630, 3299, 3625
BsmAI GTCTC 8 cut(s) 421, 1041, 1100, 1170, 1963, 2161, 3349, 3791
BsmFI GGGAC 1 cut(s) 1575
BsmI GAATGC 2 cut(s) 1792, 3445
BsnI GGCC 9 cut(s) 82, 560, 1064, 1511, 1608, 1945, 2166, 2565, 3629
BsoBI CYCGRG 1 cut(s) 1632
Bsp1286I GDGCHC 7 cut(s) 549, 1687, 1778, 2074, 2911, 3005, 3640
Bsp1720I GCTNAGC 1 cut(s) 1518
Bsp19I CCATGG 2 cut(s) 195, 561
BspANI GGCC 9 cut(s) 82, 560, 1064, 1511, 1608, 1945, 2166, 2565, 3629
BspCNI CTCAG 7 cut(s) 1179, 1510, 1570, 1693, 1855, 2301, 3007
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 999
BspLI GGNNCC 9 cut(s) 151, 376, 1030, 1434, 1607, 1860, 2908, 3545, 3603
BspMAI CTGCAG 5 cut(s) 1090, 2227, 2557, 2894, 3469
BspPI GGATC 8 cut(s) 1409, 1853, 1866, 1995, 2023, 2188, 3198, 3702
BspQI GCTCTTC 2 cut(s) 182, 2020
BspT107I GGYRCC 2 cut(s) 149, 3601
BsrBI CCGCTC 3 cut(s) 677, 1293, 3538
BsrDI GCAATG 3 cut(s) 1797, 3417, 3774
BsrFI RCCGGY 3 cut(s) 1025, 1435, 2561
BsrI ACTGG 5 cut(s) 514, 589, 1728, 2198, 3633
BssAI RCCGGY 3 cut(s) 1025, 1435, 2561
BssECI CCNNGG 6 cut(s) 153, 195, 561, 651, 1237, 2011
BssNI GRCGYC 2 cut(s) 2146, 3602
BssSI CACGAG 2 cut(s) 729, 3585
BssT1I CCWWGG 3 cut(s) 153, 195, 561
Bst2BI CACGAG 2 cut(s) 729, 3585
Bst2UI CCWGG 3 cut(s) 653, 1430, 3188
Bst6I CTCTTC 4 cut(s) 182, 1494, 2020, 2760
BstACI GRCGYC 2 cut(s) 2146, 3602
BstAPI GCANNNNNTGC 4 cut(s) 1274, 2078, 3644, 3848
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 7 cut(s) 130, 1524, 1880, 2563, 2707, 2890, 2926
BstDSI CCRYGG 4 cut(s) 195, 561, 1237, 2011
BstENI CCTNNNNNAGG 3 cut(s) 2628, 3297, 3623
BstF5I GGATG 9 cut(s) 31, 417, 534, 644, 1198, 1489, 2088, 3439, 3823
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 2 cut(s) 234, 3605
BstHHI GCGC 2 cut(s) 233, 3604
BstMAI GTCTC 8 cut(s) 421, 1041, 1100, 1170, 1963, 2161, 3349, 3791
BstNI CCWGG 3 cut(s) 653, 1430, 3188
BstNSI RCATGY 1 cut(s) 3851
BstPAI GACNNNNGTC 1 cut(s) 1751
BstSCI CCNGG 4 cut(s) 651, 1122, 1428, 3186
BstSFI CTRYAG 9 cut(s) 395, 928, 1086, 1626, 2223, 2484, 2553, 2890, 3465
BstSLI GKGCMC 2 cut(s) 2074, 3640
BstUI CGCG 1 cut(s) 59
BstX2I RGATCY 4 cut(s) 1858, 2000, 2193, 3190
BstXI CCANNNNNNTGG 2 cut(s) 274, 322
BstYI RGATCY 4 cut(s) 1858, 2000, 2193, 3190
Bsu36I CCTNAGG 2 cut(s) 1557, 1863
BsuI GTATCC 3 cut(s) 596, 2253, 3168
BsuRI GGCC 9 cut(s) 82, 560, 1064, 1511, 1608, 1945, 2166, 2565, 3629
BtgI CCRYGG 4 cut(s) 195, 561, 1237, 2011
BtgZI GCGATG 1 cut(s) 1751
BtrI CACGTC 1 cut(s) 2947
BtsCI GGATG 9 cut(s) 31, 417, 534, 644, 1198, 1489, 2088, 3439, 3823
BtsI GCAGTG 1 cut(s) 3762
BtsIMutI CAGTG 9 cut(s) 339, 507, 1721, 2205, 2680, 3267, 3640, 3711, 3762
Cac8I GCNNGC 7 cut(s) 130, 1524, 1880, 2563, 2707, 2890, 2926
CaiI CAGNNNCTG 1 cut(s) 1700
CciI TCATGA 1 cut(s) 999
CfoI GCGC 2 cut(s) 233, 3604
Cfr10I RCCGGY 3 cut(s) 1025, 1435, 2561
Cfr13I GGNCC 7 cut(s) 80, 98, 1509, 1606, 1835, 2804, 3544
CseI GACGC 4 cut(s) 48, 1700, 2135, 2711
Csp6I GTAC 6 cut(s) 161, 222, 835, 2214, 2695, 2785
CspAI ACCGGT 1 cut(s) 1435
CspCI CAANNNNNGTGG 6 cut(s) 127, 162, 3329, 3364, 3690, 3725
CviQI GTAC 6 cut(s) 161, 222, 835, 2214, 2695, 2785
DinI GGCGCC 1 cut(s) 3603
DrdI GACNNNNNNGTC 1 cut(s) 1977
DriI GACNNNNNGTC 2 cut(s) 334, 3070
DseDI GACNNNNNNGTC 1 cut(s) 1977
EaeI YGGCCR 2 cut(s) 1062, 2164
Eam1104I CTCTTC 4 cut(s) 182, 1494, 2020, 2760
Eam1105I GACNNNNNGTC 2 cut(s) 334, 3070
EarI CTCTTC 4 cut(s) 182, 1494, 2020, 2760
EciI GGCGGA 1 cut(s) 972
Ecl136II GAGCTC 1 cut(s) 3003
Eco130I CCWWGG 3 cut(s) 153, 195, 561
Eco24I GRGCYC 2 cut(s) 2911, 3005
Eco47I GGWCC 4 cut(s) 98, 1835, 2804, 3544
Eco53kI GAGCTC 1 cut(s) 3003
Eco57I CTGAAG 3 cut(s) 1518, 2784, 3365
Eco72I CACGTG 1 cut(s) 37
Eco81I CCTNAGG 2 cut(s) 1557, 1863
Eco88I CYCGRG 1 cut(s) 1632
EcoICRI GAGCTC 1 cut(s) 3003
EcoNI CCTNNNNNAGG 3 cut(s) 2628, 3297, 3623
EcoRI GAATTC 2 cut(s) 310, 1656
EcoRII CCWGG 3 cut(s) 651, 1428, 3186
EcoT14I CCWWGG 3 cut(s) 153, 195, 561
EcoT22I ATGCAT 1 cut(s) 3676
EcoT38I GRGCYC 2 cut(s) 2911, 3005
EgeI GGCGCC 1 cut(s) 3603
EheI GGCGCC 1 cut(s) 3603
ErhI CCWWGG 3 cut(s) 153, 195, 561
FalI AAGNNNNNCTT 7 cut(s) 1975, 2007, 2145, 2177, 2273, 2305, 3844
FaqI GGGAC 1 cut(s) 1575
FauI CCCGC 3 cut(s) 682, 745, 3531
FauNDI CATATG 2 cut(s) 2062, 3424
FbaI TGATCA 6 cut(s) 7, 39, 414, 1933, 2449, 3804
FblI GTMKAC 2 cut(s) 360, 3257
FokI GGATG 9 cut(s) 38, 424, 541, 651, 1205, 1496, 2075, 3446, 3830
FriOI GRGCYC 2 cut(s) 2911, 3005
GlaI GCGC 2 cut(s) 232, 3603
GsuI CTGGAG 3 cut(s) 531, 2112, 2925
HaeII RGCGCY 2 cut(s) 234, 3605
HaeIII GGCC 9 cut(s) 82, 560, 1064, 1511, 1608, 1945, 2166, 2565, 3629
HapII CCGG 8 cut(s) 83, 101, 420, 1026, 1124, 1436, 1744, 2562
HgaI GACGC 4 cut(s) 48, 1700, 2135, 2711
HhaI GCGC 2 cut(s) 233, 3604
Hin1I GRCGYC 2 cut(s) 2146, 3602
Hin6I GCGC 2 cut(s) 231, 3602
HinP1I GCGC 2 cut(s) 231, 3602
HincII GTYRAC 4 cut(s) 328, 1023, 1741, 3258
HindII GTYRAC 4 cut(s) 328, 1023, 1741, 3258
HindIII AAGCTT 2 cut(s) 484, 855
HpaI GTTAAC 1 cut(s) 1741
HpaII CCGG 8 cut(s) 83, 101, 420, 1026, 1124, 1436, 1744, 2562
HphI GGTGA 8 cut(s) 17, 409, 548, 1364, 1592, 2251, 2785, 3385
HpyAV CCTTC 9 cut(s) 565, 637, 1474, 1915, 2296, 2404, 2764, 3115, 3592
HpyCH4IV ACGT 4 cut(s) 36, 2427, 2946, 3174
HpySE526I ACGT 4 cut(s) 36, 2427, 2946, 3174
Hsp92I GRCGYC 2 cut(s) 2146, 3602
HspAI GCGC 2 cut(s) 231, 3602
KasI GGCGCC 1 cut(s) 3601
KroI GCCGGC 1 cut(s) 2561
KroNI GCCGGC 1 cut(s) 2563
Ksp22I TGATCA 6 cut(s) 7, 39, 414, 1933, 2449, 3804
KspAI GTTAAC 1 cut(s) 1741
LguI GCTCTTC 2 cut(s) 182, 2020
LmnI GCTCC 7 cut(s) 374, 755, 1034, 1868, 2131, 2906, 3008
MaeII ACGT 4 cut(s) 36, 2427, 2946, 3174
MaeIII GTNAC 5 cut(s) 113, 2042, 3089, 3302, 3515
MbiI CCGCTC 3 cut(s) 677, 1293, 3538
MfeI CAATTG 6 cut(s) 777, 1821, 2466, 2594, 2745, 3579
MflI RGATCY 4 cut(s) 1858, 2000, 2193, 3190
MhlI GDGCHC 7 cut(s) 549, 1687, 1778, 2074, 2911, 3005, 3640
Mly113I GGCGCC 1 cut(s) 3602
MlyI GAGTC 5 cut(s) 2453, 3077, 3089, 3669, 3780
MmeI TCCRAC 5 cut(s) 389, 2494, 2965, 3185, 3214
Mph1103I ATGCAT 1 cut(s) 3676
MroNI GCCGGC 1 cut(s) 2561
MroXI GAANNNNTTC 3 cut(s) 2388, 2669, 3034
MslI CAYNNNNRTG 4 cut(s) 272, 1054, 2457, 3852
MspA1I CMGCKG 5 cut(s) 383, 752, 1393, 1514, 2981
MspI CCGG 8 cut(s) 83, 101, 420, 1026, 1124, 1436, 1744, 2562
MspR9I CCNGG 4 cut(s) 653, 1124, 1430, 3188
MunI CAATTG 6 cut(s) 777, 1821, 2466, 2594, 2745, 3579
Mva1269I GAATGC 2 cut(s) 1792, 3445
MvaI CCWGG 3 cut(s) 653, 1430, 3188
MvnI CGCG 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 2563
NarI GGCGCC 1 cut(s) 3602
NciI CCSGG 1 cut(s) 1124
NcoI CCATGG 2 cut(s) 195, 561
NdeI CATATG 2 cut(s) 2062, 3424
NgoMIV GCCGGC 1 cut(s) 2561
NlaIV GGNNCC 9 cut(s) 151, 376, 1030, 1434, 1607, 1860, 2908, 3545, 3603
NmuCI GTSAC 4 cut(s) 113, 2042, 3089, 3302
NsiI ATGCAT 1 cut(s) 3676
NspI RCATGY 1 cut(s) 3851
PaeR7I CTCGAG 1 cut(s) 1632
PagI TCATGA 1 cut(s) 999
PciSI GCTCTTC 2 cut(s) 182, 2020
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PctI GAATGC 2 cut(s) 1792, 3445
PdiI GCCGGC 1 cut(s) 2563
PdmI GAANNNNTTC 3 cut(s) 2388, 2669, 3034
PflFI GACNNNGTC 1 cut(s) 1370
PflMI CCANNNNNTGG 1 cut(s) 1349
PfoI TCCNGGA 1 cut(s) 3186
PinAI ACCGGT 1 cut(s) 1435
PleI GAGTC 5 cut(s) 2452, 3077, 3089, 3668, 3779
PluTI GGCGCC 1 cut(s) 3605
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
PpsI GAGTC 5 cut(s) 2452, 3077, 3089, 3668, 3779
Ppu21I YACGTR 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 1751
PshBI ATTAAT 2 cut(s) 288, 2336
PsiI TTATAA 2 cut(s) 1886, 2606
Psp124BI GAGCTC 1 cut(s) 3005
Psp6I CCWGG 3 cut(s) 651, 1428, 3186
PspCI CACGTG 1 cut(s) 37
PspGI CCWGG 3 cut(s) 651, 1428, 3186
PspN4I GGNNCC 9 cut(s) 151, 376, 1030, 1434, 1607, 1860, 2908, 3545, 3603
PspPI GGNCC 7 cut(s) 80, 98, 1509, 1606, 1835, 2804, 3544
PspXI VCTCGAGB 1 cut(s) 1632
PstI CTGCAG 5 cut(s) 1090, 2227, 2557, 2894, 3469
PstNI CAGNNNCTG 1 cut(s) 1700
PsuI RGATCY 4 cut(s) 1858, 2000, 2193, 3190
PsyI GACNNNGTC 1 cut(s) 1370
PvuII CAGCTG 3 cut(s) 383, 1393, 2981
RsaI GTAC 6 cut(s) 162, 223, 836, 2215, 2696, 2786
RsaNI GTAC 6 cut(s) 161, 222, 835, 2214, 2695, 2785
RseI CAYNNNNRTG 4 cut(s) 272, 1054, 2457, 3852
SacI GAGCTC 1 cut(s) 3005
SalI GTCGAC 1 cut(s) 3256
SapI GCTCTTC 2 cut(s) 182, 2020
Sau96I GGNCC 7 cut(s) 80, 98, 1509, 1606, 1835, 2804, 3544
SchI GAGTC 5 cut(s) 2453, 3077, 3089, 3669, 3780
ScrFI CCNGG 4 cut(s) 653, 1124, 1430, 3188
SduI GDGCHC 7 cut(s) 549, 1687, 1778, 2074, 2911, 3005, 3640
SfcI CTRYAG 9 cut(s) 395, 928, 1086, 1626, 2223, 2484, 2553, 2890, 3465
SfoI GGCGCC 1 cut(s) 3603
Sfr274I CTCGAG 1 cut(s) 1632
SinI GGWCC 4 cut(s) 98, 1835, 2804, 3544
SlaI CTCGAG 1 cut(s) 1632
SmiMI CAYNNNNRTG 4 cut(s) 272, 1054, 2457, 3852
SmlI CTYRAG 2 cut(s) 1632, 1771
SmoI CTYRAG 2 cut(s) 1632, 1771
SspDI GGCGCC 1 cut(s) 3601
SspI AATATT 2 cut(s) 468, 1468
SstI GAGCTC 1 cut(s) 3005
StyD4I CCNGG 4 cut(s) 651, 1122, 1428, 3186
StyI CCWWGG 3 cut(s) 153, 195, 561
TaiI ACGT 4 cut(s) 39, 2430, 2949, 3177
TatI WGTACW 1 cut(s) 834
TauI GCSGC 6 cut(s) 59, 380, 1067, 1514, 2169, 2495
TscAI CASTG 9 cut(s) 339, 514, 1728, 2205, 2680, 3267, 3640, 3711, 3762
TseFI GTSAC 4 cut(s) 113, 2042, 3089, 3302
Tsp45I GTSAC 4 cut(s) 113, 2042, 3089, 3302
TspGWI ACGGA 1 cut(s) 1226
TspRI CASTG 9 cut(s) 339, 514, 1728, 2205, 2680, 3267, 3640, 3711, 3762
Tth111I GACNNNGTC 1 cut(s) 1370
Van91I CCANNNNNTGG 1 cut(s) 1349
VneI GTGCAC 2 cut(s) 2070, 3636
VpaK11BI GGWCC 4 cut(s) 98, 1835, 2804, 3544
VspI ATTAAT 2 cut(s) 288, 2336
XagI CCTNNNNNAGG 3 cut(s) 2628, 3297, 3623
XapI RAATTY 5 cut(s) 310, 1538, 1656, 2542, 2936
XceI RCATGY 1 cut(s) 3851
XcmI CCANNNNNNNNNTGG 1 cut(s) 3554
XhoI CTCGAG 1 cut(s) 1632
XmiI GTMKAC 2 cut(s) 360, 3257
XmnI GAANNNNTTC 3 cut(s) 2388, 2669, 3034
Zsp2I ATGCAT 1 cut(s) 3676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.