FvH4_6g00650

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000116
Physical Location & Seq
Reverse (-)
373295 .. 378074
4780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00650.t1

Sequence Viewer

Length: 3546 bp
ATGGCAGAGGAAAATGGCTTTGGTGGCAATACAAGTATGGATGAAAATGAAGCACCACCATCAGAAAGCAAAGCACAAAAAGCAAGCAGAAGCTGCAGCATCACTGAAATACAGGAAGACTCGAAGGAGAAGACCAAAGGAAATGAGATTGTTCCATTTCACAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTGTTGATGACCATAGGAACAGTTGGTGCCATTGGAAATGGGTTGTGTATGCCCATTATGACTATACTCTTTGGCCAATTGACTGATTCTTTTGGATATAGCGACAATAGCAAAGACATAGTTCATGCTGTTTCCAAGGTCTCTCTAAGATATGTCTACTTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTTCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCGGCACGAATAAGGAGTTTGTACCTGAAAACCATATTAAGGCAAGAAGTAGCTTTCTTTGATATGGAAACAAACACCGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAAAAGGTTGGAAAGTTTATACAACTCATATCGACATTCATTGGAGGCATTGTGATAGCATTCATCAGAGGGTGGCTTCTAACACTCGTCTTGATGTCCACTATTCCACTTCTTGTGGCAGCCGGAGCAGTAATGTCCATTATCATAGTCAAAATGGCTTCCAGAGGACAAAATGCCTATGCGAAAGCTGCAACTGTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCTTCATTTACCGGAGAGACACAAGCTATAACCAACTATAAGAGATATCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTAGGTTTTGGCATGTTTATGTTGGTTATGTTATCCAGTTATGGTCTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAAAGAGGATATAAAGGGGGTGCTGTGGTCAATGTGATTGTAGCTGTGATGGCTGGTTCCATGTCTCTAGGCCAGGCATCTCCCTGTGTGAGTGCATTTGCTGCTGGTCAAGCTGCAGCCTTTAAAATGTTTGAGACTATCAAGAGGAAACCAGAGATAGATTCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGATATAGAGCTGAGAGACATTTACTTCAGTTATCCAACCAGACCGAATGAACAAATATTCCATGGATTGACAGTGAGTATCCCTAGCGGCACAACCACCGCTTTGGTGGGGCAAAGTGGAAGCGGAAAGTCTACAGTGATCTGCCTGATTGAGAGATTCTATGATCCACAGGCTGGTGAAGTTCTAATAGATGGTATCAACCTCAGAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTTGTCAGCCAGGAACCGGTGTTGTTTGCATCGAGCATCAGGGACAATATTTCATATGGAAAGTATGGTGCAACTTCTGAAGAGATTAGAGCAGCAGTAGTTCTTGCAAATGCTGCTAAGTTTATTGACAAATTGCCTCAGGGACTGGACACCATGGTTGGGGAACATGGGATTCAGCTGTCTGGTGGACAGAAGCAGAGGATTGCTATAGCTAGAGCAGTTCTCAAAGACCCGCGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACCGAGAAAATTGTACAAGAGACATTGAACAGGATAATGGTCAATCGAACTACTCTCATTGTTGCTCATCGTTTGAGCACAGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGGTTGAGAAAGGTCCACACTCAGAACTAGTTAGGGATCCTAATGGAGCCTACTCTCAGCTTATACACTTGCAAGAGCTAAGTGAAGCCACAGAACAGGCTGCAGACTATTCAAGGAAGTCAGAAATTAGTTCAGAATCTCTTAGGAAGATAAGTAAAAAGAAGTCATTTCAACGATCCTTAAGCCATGATTCCTCTGGAGCAGGAAGTAGCAGCCACCATTCATTCAAACTACCATTCGGTTTTCCCACAGGACATGAGATAGTAGATACTTTTACAGAAGAACCAGGTACAACAACTATGCAACAATCACAAAAGGCTCCTATCCGCCGCCTTGCCTACCTTAACAAGCCCGAGATTCCAGTGCTAGTAATTGGAGCTACAGCTGCAATAGCCAATGGTGTGATATTTCCAATTGTTGGTTTAATAATTTCCAGTGCCATCAAAACGTTGTATGAACCACCTGATCAACTCAAAAAGGATTCTAAGTTTTGGGCACTAATGTATGTGACCCTTGGTCTGGCTTCCTTACTGGTGATTCCAGTAAGATCATACTTCTTTTCAGTGGCTGGATGCAAACTAGTCGAACGTATTAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGGTTGGATGGTTTGATGAGCCTCGAAGTGGGGAAATTGGTGCAAAGCTCTCGGCAAATGCAGCCACTGTGCGCTGCCTAGTTGGTGATGCACTCGCTCAGGTGATTGGAAATATTGCAACAGCAGTCGCCGGTTTAGTGATTGCTTTTGTTGCATGTTGGCAGATGGCATTTATTGTCCTGGTATTGTTTCCTCTTATTGGTGTCACAGGATATATGGAACTAAAATTCATAAAAGGGTTCAGCGCAGATTCAAAGATGATGTATGAGGAAGCAAGCCAGATTGCTACTGATGCAGTTGGGAGTATAAGAACAGTTGCTTCATTCTGTGCCGAAGAGAAGGTGATGCAACTATACAACACAAAATGTGAAGGCCCTATGAGAACTGGGATTAGGCAAGGAATTATCAGTGGCATAGGATTTGGTTTATCGTTCTTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTATGCTGGAGCTCAACTTGTGGTGCATGGCAAAACAACATTCTTAGATGTTTTTCGGGTTTTCTTTTCTCTAACTATGGCCGCTATGACGATTTCCCAATCGAGCTCCTTAGCTCCTGATTCATCTAAAGCAAACGCTGCTACTGCTTCTATCTTTGCCATATTAGATCAGAAGTCAAAGATTGATCCGAGTGATGAGTCTGGGATGACAATGGACAATGTAAAGGGAGATATTGAGCTTCGTAATGTATGCTTCAACTATCCGTCCAGGCCAGACGTTCAGGTTTTTCAAGACCTCAACCTGGTCATTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACTGTGATCTCACTATTGCAAAGATTCTATGATCCTAACTCGGGTCACATTACACTCGATGGTGTTGAAATTCGGAAGTTCCATTTGAAGTGGCTGAGGCAGCAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATCCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCAACAGAAGCTGAAATATTGGCTGCATCTGAATCCGCCAATGCTCACACATTCATTAGTGGTTTACAAGAGGCAAGCCAATCAATTAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1182

Amino Acids

127.79

Weight (kDa)

6.87

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 69 - 341 1.6e-59 ABC transporter transmembrane region
ABC_tran PF00005 410 - 558 7.2e-32 ABC transporter
ABC_membrane PF00664 728 - 998 3.3e-51 ABC transporter transmembrane region
ABC_tran PF00005 1066 - 1160 5.8e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 2 cut(s) 1340, 2231
AccI GTMKAC 3 cut(s) 351, 1298, 2892
AccII CGCG 1 cut(s) 1645
AciI CCGC 9 cut(s) 425, 1254, 1266, 1290, 1643, 2140, 2143, 2988, 3486
AclI AACGTT 1 cut(s) 2261
AclWI GGATC 8 cut(s) 1325, 1400, 1844, 1857, 1983, 3086, 3293, 3379
AcoI YGGCCR 3 cut(s) 268, 405, 2985
AcsI RAATTY 2 cut(s) 2666, 3336
AcuI CTGAAG 3 cut(s) 371, 1177, 1509
AfaI GTAC 3 cut(s) 446, 1704, 2104
AflII CTTAAG 1 cut(s) 1993
AgeI ACCGGT 1 cut(s) 1426
AhdI GACNNNNNGTC 1 cut(s) 2328
AhlI ACTAGT 2 cut(s) 1840, 2392
AjnI CCWGG 6 cut(s) 1035, 1419, 2098, 2619, 3173, 3207
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 2426
AloI GAACNNNNNNTCC 2 cut(s) 1209, 1241
Alw21I GWGCWC 4 cut(s) 1678, 1769, 2920, 3014
Alw26I GTCTC 7 cut(s) 340, 800, 1032, 1091, 1176, 1368, 1703
Alw44I GTGCAC 1 cut(s) 1674
AlwI GGATC 8 cut(s) 1325, 1400, 1844, 1857, 1983, 3086, 3293, 3379
AlwNI CAGNNNCTG 5 cut(s) 93, 1555, 2381, 2507, 3461
Ama87I CYCGRG 2 cut(s) 2165, 3307
AoxI GGCC 6 cut(s) 268, 405, 1033, 2812, 2985, 3176
ApaLI GTGCAC 1 cut(s) 1674
ApoI RAATTY 2 cut(s) 2666, 3336
AsiGI ACCGGT 1 cut(s) 1426
AspLEI GCGC 2 cut(s) 2514, 2687
AspS9I GGNCC 2 cut(s) 1826, 2813
AsuHPI GGTGA 7 cut(s) 539, 1178, 1355, 2359, 2537, 2554, 2794
AvaI CYCGRG 2 cut(s) 2165, 3307
AvaII GGWCC 1 cut(s) 1826
AxyI CCTNAGG 1 cut(s) 1548
BaeGI GKGCMC 2 cut(s) 1678, 2311
BalI TGGCCA 2 cut(s) 270, 407
BamHI GGATCC 1 cut(s) 1849
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 2920, 3014
BbsI GAAGAC 2 cut(s) 123, 137
Bbv12I GWGCWC 4 cut(s) 1678, 1769, 2920, 3014
BbvCI CCTCAGC 1 cut(s) 3362
BccI CCATC 8 cut(s) 67, 397, 1006, 1352, 2261, 2442, 2599, 3320
BcgI CGANNNNNNTGC 4 cut(s) 2377, 2411, 2472, 2506
BciT130I CCWGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
BciVI GTATCC 1 cut(s) 1256
BclI TGATCA 1 cut(s) 2278
BcoDI GTCTC 7 cut(s) 340, 800, 1032, 1091, 1176, 1368, 1703
BcuI ACTAGT 2 cut(s) 1840, 2392
BfaI CTAG 8 cut(s) 1031, 1251, 1623, 1658, 1841, 2180, 2393, 2519
BfmI CTRYAG 7 cut(s) 94, 753, 1077, 1299, 1617, 1914, 2193
BfrI CTTAAG 1 cut(s) 1993
BfuI GTATCC 1 cut(s) 1256
Bme1390I CCNGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
Bme18I GGWCC 1 cut(s) 1826
BmeRI GACNNNNNGTC 1 cut(s) 2328
BmeT110I CYCGRG 2 cut(s) 2165, 3307
BmgT120I GGNCC 2 cut(s) 1826, 2813
BmiI GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2133
BmrFI CCNGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
BmrI ACTGGG 1 cut(s) 2835
BmuI ACTGGG 1 cut(s) 2835
BpiI GAAGAC 2 cut(s) 123, 137
BplI GAGNNNNNCTC 2 cut(s) 1617, 1649
BpmI CTGGAG 2 cut(s) 2031, 2934
Bpu10I CCTNAGC 3 cut(s) 2538, 3016, 3362
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 5 cut(s) 330, 1228, 1563, 2326, 3237
BsaWI WCCGGW 3 cut(s) 500, 800, 1426
BsaXI ACNNNNNCTCC 4 cut(s) 495, 525, 594, 624
Bse118I RCCGGY 2 cut(s) 1426, 2570
Bse1I ACTGG 9 cut(s) 921, 1560, 1683, 2174, 2247, 2349, 2354, 2830, 3395
Bse21I CCTNAGG 1 cut(s) 1548
Bse3DI GCAATG 3 cut(s) 558, 1788, 3426
BseBI CCWGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
BseDI CCNNGG 5 cut(s) 330, 1228, 1563, 2326, 3237
BseGI GGATG 8 cut(s) 46, 408, 525, 1159, 1687, 2390, 2453, 3117
BseMI GCAATG 3 cut(s) 558, 1788, 3426
BseMII CTCAG 7 cut(s) 1169, 1384, 1562, 1848, 1883, 2552, 3353
BseNI ACTGG 9 cut(s) 921, 1560, 1683, 2174, 2247, 2349, 2354, 2830, 3395
BseSI GKGCMC 2 cut(s) 1678, 2311
Bsh1236I CGCG 1 cut(s) 1645
BshFI GGCC 6 cut(s) 270, 407, 1035, 2814, 2987, 3178
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 1426
BsiHKAI GWGCWC 4 cut(s) 1678, 1769, 2920, 3014
BsiHKCI CYCGRG 2 cut(s) 2165, 3307
BsiSI CCGG 6 cut(s) 501, 681, 801, 882, 1427, 2571
BslFI GGGAC 3 cut(s) 1466, 1566, 3390
BsmAI GTCTC 7 cut(s) 340, 800, 1032, 1091, 1176, 1368, 1703
BsmFI GGGAC 3 cut(s) 1466, 1566, 3390
BsmI GAATGC 3 cut(s) 380, 617, 1783
BsnI GGCC 6 cut(s) 270, 407, 1035, 2814, 2987, 3178
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 2 cut(s) 2165, 3307
Bsp1286I GDGCHC 5 cut(s) 1678, 1769, 2311, 2920, 3014
Bsp1407I TGTACA 1 cut(s) 1702
Bsp19I CCATGG 2 cut(s) 1228, 1563
BspACI CCGC 9 cut(s) 425, 1254, 1266, 1290, 1643, 2140, 2143, 2988, 3486
BspANI GGCC 6 cut(s) 270, 407, 1035, 2814, 2987, 3178
BspCNI CTCAG 7 cut(s) 1170, 1383, 1561, 1847, 1882, 2551, 3354
BspFNI CGCG 1 cut(s) 1645
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2133
BspMAI CTGCAG 3 cut(s) 98, 1081, 1918
BspPI GGATC 8 cut(s) 1325, 1400, 1844, 1857, 1983, 3086, 3293, 3379
BspT107I GGYRCC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 1993
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 3 cut(s) 558, 1788, 3426
BsrFI RCCGGY 2 cut(s) 1426, 2570
BsrGI TGTACA 1 cut(s) 1702
BsrI ACTGG 9 cut(s) 921, 1560, 1683, 2174, 2247, 2349, 2354, 2830, 3395
BssAI RCCGGY 2 cut(s) 1426, 2570
BssECI CCNNGG 5 cut(s) 330, 1228, 1563, 2326, 3237
BssT1I CCWWGG 5 cut(s) 330, 1228, 1563, 2326, 3237
Bst2UI CCWGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
Bst6I CTCTTC 2 cut(s) 1485, 2769
BstAFI CTTAAG 1 cut(s) 1993
BstAPI GCANNNNNTGC 5 cut(s) 93, 1064, 1523, 1682, 3044
BstAUI TGTACA 1 cut(s) 1702
BstC8I GCNNGC 4 cut(s) 85, 397, 2716, 3526
BstDSI CCRYGG 2 cut(s) 1228, 1563
BstF5I GGATG 8 cut(s) 46, 408, 525, 1159, 1687, 2390, 2453, 3117
BstFNI CGCG 1 cut(s) 1645
BstHHI GCGC 2 cut(s) 2514, 2687
BstMAI GTCTC 7 cut(s) 340, 800, 1032, 1091, 1176, 1368, 1703
BstNI CCWGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
BstNSI RCATGY 2 cut(s) 901, 2598
BstSCI CCNGG 6 cut(s) 1035, 1419, 2098, 2619, 3173, 3207
BstSFI CTRYAG 7 cut(s) 94, 753, 1077, 1299, 1617, 1914, 2193
BstSLI GKGCMC 2 cut(s) 1678, 2311
BstUI CGCG 1 cut(s) 1645
BstV2I GAAGAC 2 cut(s) 123, 137
BstX2I RGATCY 1 cut(s) 1849
BstXI CCANNNNNNTGG 1 cut(s) 1270
BstYI RGATCY 1 cut(s) 1849
Bsu36I CCTNAGG 1 cut(s) 1548
BsuI GTATCC 1 cut(s) 1256
BsuRI GGCC 6 cut(s) 270, 407, 1035, 2814, 2987, 3178
BtgI CCRYGG 2 cut(s) 1228, 1563
BtsCI GGATG 8 cut(s) 46, 408, 525, 1159, 1687, 2390, 2453, 3117
Cac8I GCNNGC 4 cut(s) 85, 397, 2716, 3526
CaiI CAGNNNCTG 5 cut(s) 93, 1555, 2381, 2507, 3461
CciI TCATGA 1 cut(s) 865
CfoI GCGC 2 cut(s) 2514, 2687
Cfr10I RCCGGY 2 cut(s) 1426, 2570
Cfr13I GGNCC 2 cut(s) 1826, 2813
CsiI ACCWGGT 2 cut(s) 2098, 3207
Csp6I GTAC 3 cut(s) 445, 1703, 2103
CspAI ACCGGT 1 cut(s) 1426
CviQI GTAC 3 cut(s) 445, 1703, 2103
DraI TTTAAA 1 cut(s) 1087
DriI GACNNNNNGTC 1 cut(s) 2328
EaeI YGGCCR 3 cut(s) 268, 405, 2985
Eam1104I CTCTTC 2 cut(s) 1485, 2769
Eam1105I GACNNNNNGTC 1 cut(s) 2328
EarI CTCTTC 2 cut(s) 1485, 2769
EciI GGCGGA 2 cut(s) 2129, 3475
Ecl136II GAGCTC 2 cut(s) 2918, 3012
Eco130I CCWWGG 5 cut(s) 330, 1228, 1563, 2326, 3237
Eco24I GRGCYC 2 cut(s) 2920, 3014
Eco31I GGTCTC 1 cut(s) 340
Eco32I GATATC 3 cut(s) 193, 836, 1786
Eco47I GGWCC 1 cut(s) 1826
Eco53kI GAGCTC 2 cut(s) 2918, 3012
Eco57I CTGAAG 3 cut(s) 371, 1177, 1509
Eco81I CCTNAGG 1 cut(s) 1548
Eco88I CYCGRG 2 cut(s) 2165, 3307
EcoICRI GAGCTC 2 cut(s) 2918, 3012
EcoO109I RGGNCCY 1 cut(s) 2813
EcoRII CCWGG 6 cut(s) 1035, 1419, 2098, 2619, 3173, 3207
EcoRV GATATC 3 cut(s) 193, 836, 1786
EcoT14I CCWWGG 5 cut(s) 330, 1228, 1563, 2326, 3237
EcoT38I GRGCYC 2 cut(s) 2920, 3014
ErhI CCWWGG 5 cut(s) 330, 1228, 1563, 2326, 3237
FaqI GGGAC 3 cut(s) 1466, 1566, 3390
FauI CCCGC 1 cut(s) 1650
FauNDI CATATG 2 cut(s) 1465, 3433
FbaI TGATCA 1 cut(s) 2278
FblI GTMKAC 3 cut(s) 351, 1298, 2892
FokI GGATG 8 cut(s) 53, 415, 532, 1166, 1694, 2397, 2460, 3124
FriOI GRGCYC 2 cut(s) 2920, 3014
FspBI CTAG 8 cut(s) 1031, 1251, 1623, 1658, 1841, 2180, 2393, 2519
GlaI GCGC 2 cut(s) 2513, 2686
GsuI CTGGAG 2 cut(s) 2031, 2934
HaeIII GGCC 6 cut(s) 270, 407, 1035, 2814, 2987, 3178
HapII CCGG 6 cut(s) 501, 681, 801, 882, 1427, 2571
HhaI GCGC 2 cut(s) 2514, 2687
Hin6I GCGC 2 cut(s) 2512, 2685
HinP1I GCGC 2 cut(s) 2512, 2685
HpaII CCGG 6 cut(s) 501, 681, 801, 882, 1427, 2571
HphI GGTGA 7 cut(s) 539, 1178, 1355, 2359, 2537, 2554, 2794
Hpy166II GTNNAC 9 cut(s) 352, 657, 1299, 1598, 1676, 1829, 2434, 2893, 3515
Hpy8I GTNNAC 9 cut(s) 352, 657, 1299, 1598, 1676, 1829, 2434, 2893, 3515
HpyAV CCTTC 6 cut(s) 118, 395, 863, 2773, 2804, 3437
HpyCH4IV ACGT 3 cut(s) 2261, 2401, 3183
HpySE526I ACGT 3 cut(s) 2261, 2401, 3183
HspAI GCGC 2 cut(s) 2512, 2685
Ksp22I TGATCA 1 cut(s) 2278
LmnI GCTCC 9 cut(s) 415, 683, 1859, 2012, 2137, 2189, 2915, 3017, 3025
MabI ACCWGGT 2 cut(s) 2098, 3207
MaeI CTAG 8 cut(s) 1031, 1251, 1623, 1658, 1841, 2180, 2393, 2519
MaeII ACGT 3 cut(s) 2261, 2401, 3183
MaeIII GTNAC 3 cut(s) 2320, 2644, 3311
MboII GAAGA 8 cut(s) 128, 142, 1502, 1790, 1972, 2105, 2786, 2866
MfeI CAATTG 2 cut(s) 272, 2226
MflI RGATCY 1 cut(s) 1849
MhlI GDGCHC 5 cut(s) 1678, 1769, 2311, 2920, 3014
MlsI TGGCCA 2 cut(s) 270, 407
MluNI TGGCCA 2 cut(s) 270, 407
MlyI GAGTC 2 cut(s) 113, 3113
MmeI TCCRAC 4 cut(s) 547, 1226, 2425, 3223
Mox20I TGGCCA 2 cut(s) 270, 407
MscI TGGCCA 2 cut(s) 270, 407
MseI TTAA 7 cut(s) 461, 1086, 1386, 1994, 2157, 2237, 3405
MslI CAYNNNNRTG 2 cut(s) 902, 2426
Msp20I TGGCCA 2 cut(s) 270, 407
MspA1I CMGCKG 2 cut(s) 1588, 2198
MspCI CTTAAG 1 cut(s) 1993
MspI CCGG 6 cut(s) 501, 681, 801, 882, 1427, 2571
MspR9I CCNGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
MunI CAATTG 2 cut(s) 272, 2226
Mva1269I GAATGC 3 cut(s) 380, 617, 1783
MvaI CCWGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
MvnI CGCG 1 cut(s) 1645
NcoI CCATGG 2 cut(s) 1228, 1563
NdeI CATATG 2 cut(s) 1465, 3433
NlaIV GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2133
NmeAIII GCCGAG 1 cut(s) 2471
NmuCI GTSAC 3 cut(s) 2320, 2644, 3311
NspI RCATGY 2 cut(s) 901, 2598
OliI CACNNNNGTG 1 cut(s) 2426
PagI TCATGA 1 cut(s) 865
PctI GAATGC 3 cut(s) 380, 617, 1783
PflMI CCANNNNNTGG 2 cut(s) 1340, 2231
PinAI ACCGGT 1 cut(s) 1426
PleI GAGTC 2 cut(s) 113, 3112
PpsI GAGTC 2 cut(s) 113, 3112
Psp124BI GAGCTC 2 cut(s) 2920, 3014
Psp1406I AACGTT 1 cut(s) 2261
Psp6I CCWGG 6 cut(s) 1035, 1419, 2098, 2619, 3173, 3207
PspGI CCWGG 6 cut(s) 1035, 1419, 2098, 2619, 3173, 3207
PspN4I GGNNCC 6 cut(s) 223, 1021, 1425, 1851, 1861, 2133
PspPI GGNCC 2 cut(s) 1826, 2813
PstI CTGCAG 3 cut(s) 98, 1081, 1918
PstNI CAGNNNCTG 5 cut(s) 93, 1555, 2381, 2507, 3461
PsuI RGATCY 1 cut(s) 1849
PvuII CAGCTG 2 cut(s) 1588, 2198
RsaI GTAC 3 cut(s) 446, 1704, 2104
RsaNI GTAC 3 cut(s) 445, 1703, 2103
RseI CAYNNNNRTG 2 cut(s) 902, 2426
SacI GAGCTC 2 cut(s) 2920, 3014
SaqAI TTAA 7 cut(s) 461, 1086, 1386, 1994, 2157, 2237, 3405
Sau96I GGNCC 2 cut(s) 1826, 2813
SchI GAGTC 2 cut(s) 113, 3113
ScrFI CCNGG 6 cut(s) 1037, 1421, 2100, 2621, 3175, 3209
SduI GDGCHC 5 cut(s) 1678, 1769, 2311, 2920, 3014
SexAI ACCWGGT 2 cut(s) 2098, 3207
SfcI CTRYAG 7 cut(s) 94, 753, 1077, 1299, 1617, 1914, 2193
SinI GGWCC 1 cut(s) 1826
SmiMI CAYNNNNRTG 2 cut(s) 902, 2426
SmlI CTYRAG 1 cut(s) 1993
SmoI CTYRAG 1 cut(s) 1993
SpeI ACTAGT 2 cut(s) 1840, 2392
SsiI CCGC 9 cut(s) 425, 1254, 1266, 1290, 1643, 2140, 2143, 2988, 3486
SspI AATATT 5 cut(s) 1224, 1459, 1650, 2554, 3468
SspMI CTAG 8 cut(s) 1031, 1251, 1623, 1658, 1841, 2180, 2393, 2519
SstI GAGCTC 2 cut(s) 2920, 3014
StyD4I CCNGG 6 cut(s) 1035, 1419, 2098, 2619, 3173, 3207
StyI CCWWGG 5 cut(s) 330, 1228, 1563, 2326, 3237
TaiI ACGT 3 cut(s) 2264, 2404, 3186
TaqI TCGA 8 cut(s) 122, 590, 1442, 1735, 2397, 2464, 3008, 3324
TaqII GACCGA 1 cut(s) 1225
TatI WGTACW 1 cut(s) 1702
TauI GCSGC 4 cut(s) 428, 1257, 2145, 2990
Tru1I TTAA 7 cut(s) 461, 1086, 1386, 1994, 2157, 2237, 3405
Tru9I TTAA 7 cut(s) 461, 1086, 1386, 1994, 2157, 2237, 3405
TseFI GTSAC 3 cut(s) 2320, 2644, 3311
Tsp45I GTSAC 3 cut(s) 2320, 2644, 3311
TspGWI ACGGA 2 cut(s) 3159, 3407
Van91I CCANNNNNTGG 2 cut(s) 1340, 2231
Vha464I CTTAAG 1 cut(s) 1993
VneI GTGCAC 1 cut(s) 1674
VpaK11BI GGWCC 1 cut(s) 1826
XapI RAATTY 2 cut(s) 2666, 3336
XbaI TCTAGA 1 cut(s) 1657
XceI RCATGY 2 cut(s) 901, 2598
XcmI CCANNNNNNNNNTGG 3 cut(s) 928, 1270, 2006
XmiI GTMKAC 3 cut(s) 351, 1298, 2892
XspI CTAG 8 cut(s) 1031, 1251, 1623, 1658, 1841, 2180, 2393, 2519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.