Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008855.1

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1023

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008855.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

tctgccgcttccatatttgcaattcttgaccggaaatccaagatagattcaagtgatgactccggaacaacaatagaaaatatgaagggagaaattgagtttcgccatgttagtttcaaatatccgaatagacctaatgtgccaatctttcaggatctttgcttgaccattcgccatggcaagacagttgctctggttggagagagtggaagtgggaagtcgacagtgatctcattgttgcagcgcttttatgatcctgattcaggtcaaattacattagatggtacagaaatgcaaacattacagttgaagtggttgagacagcaaatggggctggtgagtcaggagcccctattgtttaatgacacaatccgagccaacattgcatatggaaaggaaggagagtcaactgaggctgaaattatagcagcagcagaattggcaaatgctcacaagttcattagtagtttacaacagggttatgacacaatagtgggtgaacgaggggttcaactttctggtggacagaagcagagggtagctattgcaagagctataatgaaggcaccaaagatattactactagatgaagccaccagtgctcttgatgctgaatccgaaagagtggttcaagatgcactggatcgagttatggtggatcgaactacagtggtggttgcccatcggctatccacaattaagggtgcagatttaatagcagtggtgaaaaatggagtcattgcagagaaaggaaagcacgagactttgatcagtatcgagggtggtacttatgcttctttggtatcactacatgcaagtaactcatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

276

Amino Acids

29.88

Weight (kDa)

5.91

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	4 cut(s)	162, 248, 651, 666
AfaI	GTAC	2 cut(s)	286, 787
AfeI	AGCGCT	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	5 cut(s)	51, 118, 310, 512, 632
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	2 cut(s)	542, 554
AluI	AGCT	2 cut(s)	542, 554
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	2 cut(s)	313, 755
AlwI	GGATC	4 cut(s)	162, 248, 651, 666
Aor13HI	TCCGGA	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	241, 428, 431
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	349, 509, 736
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	778, 810
BauI	CACGAG	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	253, 440, 443
BccI	CCATC	2 cut(s)	275, 690
BclI	TGATCA	1 cut(s)	768
BcoDI	GTCTC	2 cut(s)	313, 755
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	4 cut(s)	6, 242, 429, 432
BlsI	GCNGC	4 cut(s)	7, 243, 430, 433
BmiI	GGNNCC	2 cut(s)	348, 567
BmsI	GCATC	2 cut(s)	598, 625
BsaBI	GATNNNNATC	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	2 cut(s)	30, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	597, 645
Bse3DI	GCAATG	2 cut(s)	381, 738
Bse8I	GATNNNNATC	1 cut(s)	773
BseAI	TCCGGA	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	2 cut(s)	381, 738
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	597, 645
BseXI	GCAGC	3 cut(s)	253, 440, 443
BsgI	GTGCAG	1 cut(s)	726
BshNI	GGYRCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	2 cut(s)	31, 63
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	313, 755
Bsp1286I	GDGCHC	2 cut(s)	351, 604
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	348, 567
BspPI	GGATC	4 cut(s)	162, 248, 651, 666
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	381, 738
BsrI	ACTGG	2 cut(s)	597, 645
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	758
Bst4CI	ACNGT	4 cut(s)	187, 226, 306, 670
BstDEI	CTNAG	2 cut(s)	411, 828
BstDSI	CCRYGG	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	6 cut(s)	157, 231, 256, 646, 661, 771
BstMAI	GTCTC	2 cut(s)	313, 755
BstMBI	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 383, 440, 599, 608
BstNSI	RCATGY	1 cut(s)	815
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	253, 440, 443
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	5 cut(s)	231, 604, 638, 675, 726
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	285, 786
CviAII	CATG	3 cut(s)	107, 176, 812
CviJI	RGCY	8 cut(s)	334, 349, 377, 416, 542, 554, 593, 688
CviKI_1	RGCY	8 cut(s)	334, 349, 377, 416, 542, 554, 593, 688
CviQI	GTAC	2 cut(s)	285, 786
DdeI	CTNAG	2 cut(s)	411, 828
DpnI	GATC	6 cut(s)	156, 230, 255, 645, 660, 770
DpnII	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
Eco130I	CCWWGG	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	110, 179, 815
FatI	CATG	3 cut(s)	106, 175, 811
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	768
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	4 cut(s)	6, 242, 429, 432
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	4 cut(s)	6, 242, 429, 432
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	4 cut(s)	6, 242, 429, 432
HaeII	RGCGCY	1 cut(s)	247
HapII	CCGG	2 cut(s)	31, 63
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	110, 179, 815
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	2 cut(s)	222, 408
HindII	GTYRAC	2 cut(s)	222, 408
HinfI	GANTC	7 cut(s)	47, 59, 260, 340, 404, 614, 735
HpaII	CCGG	2 cut(s)	31, 63
HphI	GGTGA	3 cut(s)	349, 509, 736
Hpy166II	GTNNAC	5 cut(s)	222, 408, 470, 500, 524
Hpy188I	TCNGA	3 cut(s)	126, 374, 619
Hpy188III	TCNNGA	7 cut(s)	26, 63, 152, 257, 344, 605, 632
Hpy8I	GTNNAC	5 cut(s)	222, 408, 470, 500, 524
HpyAV	CCTTC	3 cut(s)	79, 392, 556
HpyCH4III	ACNGT	4 cut(s)	187, 226, 306, 670
HpyCH4V	TGCA	9 cut(s)	20, 241, 295, 386, 548, 638, 707, 743, 815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 383, 440, 599, 608
HpyF3I	CTNAG	2 cut(s)	411, 828
Hsp92II	CATG	3 cut(s)	110, 179, 815
HspAI	GCGC	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	3 cut(s)	253, 440, 443
LweI	GCATC	2 cut(s)	598, 625
MaeI	CTAG	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	6 cut(s)	156, 230, 255, 645, 660, 770
MboI	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	351, 604
MluCI	AATT	6 cut(s)	21, 93, 270, 420, 437, 696
MlyI	GAGTC	4 cut(s)	53, 349, 413, 744
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	406, 497, 528, 772
MroI	TCCGGA	1 cut(s)	62
MseI	TTAA	3 cut(s)	360, 699, 713
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	2 cut(s)	31, 63
MwoI	GCNNNNNNNGC	5 cut(s)	331, 383, 440, 599, 608
NcoI	CCATGG	1 cut(s)	175
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
NlaIII	CATG	3 cut(s)	110, 179, 815
NlaIV	GGNNCC	2 cut(s)	348, 567
NspI	RCATGY	1 cut(s)	815
OliI	CACNNNNGTG	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	47, 260, 614
PkrI	GCNGC	4 cut(s)	7, 243, 430, 433
PleI	GAGTC	4 cut(s)	53, 348, 412, 743
PpsI	GAGTC	4 cut(s)	53, 348, 412, 743
PspN4I	GGNNCC	2 cut(s)	348, 567
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	286, 787
RsaNI	GTAC	2 cut(s)	285, 786
RseI	CAYNNNNRTG	1 cut(s)	491
SalI	GTCGAC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	360, 699, 713
SatI	GCNGC	4 cut(s)	6, 242, 429, 432
Sau3AI	GATC	6 cut(s)	154, 228, 253, 643, 658, 768
SchI	GAGTC	4 cut(s)	53, 349, 413, 744
SduI	GDGCHC	2 cut(s)	351, 604
SetI	ASST	4 cut(s)	136, 268, 544, 556
SfaNI	GCATC	2 cut(s)	598, 625
SfcI	CTRYAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	6 cut(s)	21, 93, 270, 420, 437, 696
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	187, 226, 306, 670
TaqI	TCGA	4 cut(s)	221, 646, 661, 777
TasI	AATT	6 cut(s)	21, 93, 270, 420, 437, 696
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	47, 260, 614
Tru1I	TTAA	3 cut(s)	360, 699, 713
Tru9I	TTAA	3 cut(s)	360, 699, 713
TscAI	CASTG	5 cut(s)	231, 604, 645, 675, 726
TseI	GCWGC	3 cut(s)	241, 428, 431
TspDTI	ATGAA	4 cut(s)	98, 448, 575, 603
TspRI	CASTG	5 cut(s)	231, 604, 645, 675, 726
XagI	CCTNNNNNAGG	1 cut(s)	261
XceI	RCATGY	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.