Rh2AG590600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000116
Physical Location & Seq
Reverse (-)
82144291 .. 82154858
10568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG590600.1

Sequence Viewer

Length: 480 bp
ATGCCGCAAGGGTTTGCTTTCACAGATGAGGATAGGGCAATTAGCTTCAAAGTCACTAGAGCTGTCTCGGCTGAAATTTACGTTACCATCATGAATGACATTTCGGCTAAAAATGAGAGCGTCCGAAGAGGTGATTTCATTAAAAATCCTCGAAATCCATCAGATGAACCTCCTCCGGTAGTTAGAACTCGCAACTACGACCAATTTAAAGCTGCATTCAAAGAACATGAAACTTATATGGAGATGGAAATTTCTAATGACGTGTCGCCATACATACGTAGAAGGCCGATGGATCAAAATGGACTGTCAGCTGCGTTTGCAAGGGTTGATGTTAAATATGAAGAGATAATTGAAGTAACTTCAATTGGCTCCAGCAAAGTCTTATGGTCCTGCACTGCTCAGTTACAACTGCTACTGACAGGAGGCGACTTATGTGGTATAAGATTAAGATTTATGTACTGCCATGAGCCTCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

5.74

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 2 cut(s) 75, 249
AfaI GTAC 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 4 cut(s) 49, 220, 353, 363
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 4 cut(s) 45, 62, 212, 311
AluI AGCT 4 cut(s) 45, 62, 212, 311
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 300
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 212, 311
ApoI RAATTY 2 cut(s) 75, 249
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 199, 298
BccI CCATC 4 cut(s) 95, 166, 238, 283
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 5, 213, 312
BlsI GCNGC 3 cut(s) 6, 214, 313
Bme18I GGWCC 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 175
BseMII CTCAG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 199, 298
BsgI GTGCAG 1 cut(s) 376
BshFI GGCC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 1 cut(s) 300
BssMI GATC 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 306
Bst6I CTCTTC 2 cut(s) 121, 336
BstBAI YACGTR 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 399
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 68, 317
BstSNI TACGTA 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 199, 298
BsuRI GGCC 1 cut(s) 286
BtrI CACGTC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 457
CviAII CATG 3 cut(s) 91, 227, 464
CviJI RGCY 9 cut(s) 45, 62, 71, 107, 212, 286, 311, 369, 469
CviKI_1 RGCY 9 cut(s) 45, 62, 71, 107, 212, 286, 311, 369, 469
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 399
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DraI TTTAAA 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 121, 336
EarI CTCTTC 2 cut(s) 121, 336
Eco105I TACGTA 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 387
FaeI CATG 3 cut(s) 94, 230, 467
FatI CATG 3 cut(s) 90, 226, 463
Fnu4HI GCNGC 3 cut(s) 5, 213, 312
Fsp4HI GCNGC 3 cut(s) 5, 213, 312
FspBI CTAG 1 cut(s) 57
GluI GCNGC 3 cut(s) 5, 213, 312
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 109
Hin1II CATG 3 cut(s) 94, 230, 467
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 125, 163
Hpy188III TCNNGA 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 3 cut(s) 81, 261, 277
HpyCH4V TGCA 3 cut(s) 215, 320, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 317
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 3 cut(s) 81, 261, 277
Hsp92II CATG 3 cut(s) 94, 230, 467
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 4 cut(s) 189, 385, 403, 405
Lsp1109I GCAGC 2 cut(s) 199, 298
MaeI CTAG 1 cut(s) 57
MaeII ACGT 3 cut(s) 81, 261, 277
MaeIII GTNAC 4 cut(s) 52, 82, 355, 402
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 138, 353
MfeI CAATTG 1 cut(s) 363
MluCI AATT 6 cut(s) 39, 75, 203, 249, 348, 363
MnlI CCTC 7 cut(s) 22, 122, 159, 180, 183, 416, 480
MseI TTAA 4 cut(s) 141, 207, 333, 446
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 68, 317
NdeII GATC 1 cut(s) 292
NlaIII CATG 3 cut(s) 94, 230, 467
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 52
PagI TCATGA 1 cut(s) 90
PctI GAATGC 1 cut(s) 215
PkrI GCNGC 3 cut(s) 6, 214, 313
Ppu21I YACGTR 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 4 cut(s) 141, 207, 333, 446
SatI GCNGC 3 cut(s) 5, 213, 312
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 387
SetI ASST 9 cut(s) 47, 64, 84, 133, 172, 214, 264, 280, 313
SinI GGWCC 1 cut(s) 387
SnaBI TACGTA 1 cut(s) 278
Sse9I AATT 6 cut(s) 39, 75, 203, 249, 348, 363
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 3 cut(s) 84, 264, 280
TaqI TCGA 1 cut(s) 151
TasI AATT 6 cut(s) 39, 75, 203, 249, 348, 363
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 4 cut(s) 141, 207, 333, 446
Tru9I TTAA 4 cut(s) 141, 207, 333, 446
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 2 cut(s) 212, 311
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 5 cut(s) 107, 127, 180, 243, 354
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 387
XapI RAATTY 2 cut(s) 75, 249
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.