Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Reverse (-)

52494028 .. 52494942

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTACGCATGCGTTGCCCCTGATTCAATTAAAGGAAAGAGCACTGCTGCTTCTATATTTGCACTTCTTGACCAAAAATCAAAAATAGATTCTAGTGATGACTCTGGAACAACCATTGTAAATGTGAAAGGAGAAATCCAATTGCATCATGTTAGTTTCAAGTATCCTAATAGACCTAATGTGCCAATCTTCCGGGATCTTTGCTTGACCATTCACCATGGCAAGACACTTGCTCTGGTGGGAGAAAGTGGAAGTGGAAAATCGACAGTGATCTCATTGCTTCAGAGATTTTATGACCTTGATTCAGGTCATATTACATTAGATAGTGTTGAAATGAAAACTTTACAGTTGAAGTGGCTGAGACAGCAAATGGGGTTGGTGAGCCAGGAGCCTCTATTGTTTAATGACACTATAAGAGCCAATGACATTGCATATGGAAAGGAAGGGATTGCAACCGAGGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGCCCACAAGTTCATTAGTAGTTTACAACAGGGTTATGATACAATAGTGGGCGAGCGAGGGGTTCAACTATCTGGTGGACAGAAGCAAAGGGTGGCTATTGCAAGAGCAATAATGAAGGCACCAAAGATATTACTAGTAGATGAAGCCACTAGTGCTCTTGATGCTGAATCCAAACGAGTGGTTCAAGATGCACTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

230

Amino Acids

24.96

Weight (kDa)

6.31

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	65 - 215	1.7e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AclWI	GGATC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	6 cut(s)	27, 160, 332, 352, 557, 677
AhlI	ACTAGT	2 cut(s)	625, 641
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw21I	GWGCWC	2 cut(s)	44, 649
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	47, 473, 476
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	206, 391
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanI	GGYRCC	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	44, 649
BbvI	GCAGC	3 cut(s)	34, 460, 488
BciT130I	CCWGG	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	355
BcuI	ACTAGT	2 cut(s)	625, 641
BfaI	CTAG	4 cut(s)	93, 626, 642, 686
BfmI	CTRYAG	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	3 cut(s)	48, 474, 477
BlsI	GCNGC	3 cut(s)	49, 475, 478
Bme1390I	CCNGG	2 cut(s)	194, 386
BmiI	GGNNCC	2 cut(s)	390, 612
BmrFI	CCNGG	2 cut(s)	194, 386
BmsI	GCATC	3 cut(s)	154, 643, 670
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	217, 456
Bse3DI	GCAATG	2 cut(s)	275, 426
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	217, 456
BseMI	GCAATG	2 cut(s)	275, 426
BseMII	CTCAG	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	34, 460, 488
BshNI	GGYRCC	1 cut(s)	610
BsiHKAI	GWGCWC	2 cut(s)	44, 649
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	44, 649
Bsp143I	GATC	2 cut(s)	196, 270
Bsp19I	CCATGG	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	390, 612
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	610
BsrDI	GCAATG	2 cut(s)	275, 426
BssECI	CCNNGG	2 cut(s)	217, 456
BssMI	GATC	2 cut(s)	196, 270
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	268, 348
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	10, 545
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	199, 273
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	196, 270
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 364, 458, 485, 644, 653
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	192, 384
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	34, 460, 488
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 273
Cac8I	GCNNGC	2 cut(s)	10, 545
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	9, 149, 218
CviJI	RGCY	8 cut(s)	358, 384, 391, 419, 461, 473, 587, 638
CviKI_1	RGCY	8 cut(s)	358, 384, 391, 419, 461, 473, 587, 638
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	2 cut(s)	198, 272
DpnII	GATC	2 cut(s)	196, 270
Eco130I	CCWWGG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	12, 152, 221
FatI	CATG	3 cut(s)	8, 148, 217
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	48, 474, 477
Fsp4HI	GCNGC	3 cut(s)	48, 474, 477
FspBI	CTAG	4 cut(s)	93, 626, 642, 686
GluI	GCNGC	3 cut(s)	48, 474, 477
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	3 cut(s)	12, 152, 221
HinfI	GANTC	5 cut(s)	23, 89, 101, 302, 659
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	2 cut(s)	206, 391
Hpy166II	GTNNAC	2 cut(s)	515, 569
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	4 cut(s)	68, 105, 650, 677
Hpy8I	GTNNAC	2 cut(s)	515, 569
HpyAV	CCTTC	2 cut(s)	437, 601
HpyCH4III	ACNGT	2 cut(s)	268, 348
HpyCH4V	TGCA	7 cut(s)	62, 145, 431, 452, 476, 593, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 364, 458, 485, 644, 653
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	3 cut(s)	12, 152, 221
Kzo9I	GATC	2 cut(s)	196, 270
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	33, 90, 206, 221, 291, 371, 398, 506, 549
Lsp1109I	GCAGC	3 cut(s)	34, 460, 488
LweI	GCATC	3 cut(s)	154, 643, 670
MaeI	CTAG	4 cut(s)	93, 626, 642, 686
MalI	GATC	2 cut(s)	198, 272
MboI	GATC	2 cut(s)	196, 270
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	44, 649
MluCI	AATT	4 cut(s)	27, 140, 465, 482
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	402, 451, 542
MseI	TTAA	2 cut(s)	30, 402
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	2 cut(s)	194, 386
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	6 cut(s)	14, 364, 458, 485, 644, 653
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	217
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	196, 270
NlaIII	CATG	3 cut(s)	12, 152, 221
NlaIV	GGNNCC	2 cut(s)	390, 612
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	23, 89, 302, 659
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	49, 475, 478
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	390, 612
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	30, 402
SatI	GCNGC	3 cut(s)	48, 474, 477
Sau3AI	GATC	2 cut(s)	196, 270
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	194, 386
SduI	GDGCHC	2 cut(s)	44, 649
SetI	ASST	4 cut(s)	178, 300, 310, 475
SfaNI	GCATC	3 cut(s)	154, 643, 670
SfcI	CTRYAG	1 cut(s)	474
SpeI	ACTAGT	2 cut(s)	625, 641
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	4 cut(s)	27, 140, 465, 482
SspMI	CTAG	4 cut(s)	93, 626, 642, 686
StyD4I	CCNGG	2 cut(s)	192, 384
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	268, 348
TaqI	TCGA	1 cut(s)	263
TasI	AATT	4 cut(s)	27, 140, 465, 482
TfiI	GAWTC	4 cut(s)	23, 89, 302, 659
Tru1I	TTAA	2 cut(s)	30, 402
Tru9I	TTAA	2 cut(s)	30, 402
TscAI	CASTG	2 cut(s)	49, 273
TseI	GCWGC	3 cut(s)	47, 473, 476
TspDTI	ATGAA	4 cut(s)	350, 493, 620, 648
TspRI	CASTG	2 cut(s)	49, 273
XceI	RCATGY	1 cut(s)	12
XspI	CTAG	4 cut(s)	93, 626, 642, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.