Rroxscaffold_5G00369450

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
51254384 .. 51261414
7031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369450.1

Sequence Viewer

Length: 3855 bp
ATGGCTGAATTGAATCCTACGGATGGAGATGCAGTCACTGAGCAAGGCATTGCATCGAATAGCCACTCAGCAGTGGCGGTGGTTTCCAAAGAACATGAACAAGATACAAACAAGAGCAAGGAGGAGGGAACAAATACAGTACCATATTACAAGCTTTTCTCCTTTGCTGATTCTGTGGATTACATGCTAATGTCTACTGGTACAATCAGCACGGTTGGAAATGGACTCTGTATGCCCCTAATGACCATACTCATGGGAGATATGATTAATTCGTTTGGAGAAACTAGGAATAACAAAGAAGTGGCTAATGCAGTTTCCAAGGTGGCTCTTAAGTTCTTTTACTTGGCTCTGGGGGCTGCTGCTGCATCATTTCTACAGATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTCTATACTTGAAAACCATATTGAGGCAAGACGTTGGGTATTTTGATAAAGAAATCAACTCTGGGGAAATTGTTGGGAGGATGTCAGGTGATACTGTGCTTATTCAAGAGGCGGTGGGTGAGAAGGTAGGGAGTTTCATTCAGTTAGTTGCAACGTTCATTGGGGGCTTCGGAATAGCATTTACTAAGGGATGGCTTCTCACCCTTGTCATGCTATCCTCTATTCCCCCTGTTGTCTTCACTACTGCTGTCTTGAACCATTTCATGGTGAAATTGGCGTCCCGTGGACAAGCTGCATATTCAAAAGGGGCTACTGTTGTAGAGGAGACAATTGGTTCAATCAGAACTGTTGCATCATTCACAGGGGAGAAGCTGGCCATATCTAACTACAATGCCTCCTTAACTAAAGCTTACAAGTCGGCTGTGCAAGAGGGTTGGGCGTCTGGTTTGGGTTTTGGTGCGGTTATCCTCATGGTATTCTGTACTTACGCTTTGGCTGTATGGTTTGGCGGAATAATGATACTTGAAAAAGGATATAAAGGAGGAGATGTCATCAATGTAATTTTTGCTGTCTTGATTGGCTCTGTGTCTCTTGGGAAAGCATCTCCTTGCATTAGTGCATTTGCTCCTGGACAAGCTGCGGCTTATAAGATGTTTGAGACAATTAAAAGAAAGCCAGAGATAGATGCGTATGACACTAAAGGGCGAGTGTTACAAGATATTCATGGAGACATAGAACTGAGGGATGTTGATTTTAGTTATCCCTCACGACCGCACGAGCAGATACTACATGGATTTTGTCTCTCAATACCTAGTGGAGCAACTGCTGCTTTGGTAGGACAGAGCGGAAGTGGAAAATCGACTATAATCAGTCTGATTGAGAGATTCTATGACCCACAGGCTGGTGAAGTTCTTATTGATGGTGTTAATCTCAAAGATTTCCAACTGAAATGGATCAGACAGAAAATAGGCCTCGTGAGCCAGGAACCAGTTTTGTTTACTGGGAGCATTAAAGATAACATTGCCTATGGAAAGGATGATGCAACTACTGAAGAAATAAAGGCTGCCGCTGAGCTTGCCAATGCTGCAAAATTCATAGATTTACTGCCTCAGGGAATAGACACAATGGTTGGTGAGCATGGAACTCAGCTATCTGGGGGACAAAAGCAAAGAGTTGCTATAGCTAGAGCAATTCTGAAGAACCCGAGAATCCTACTGTTAGATGAAGCCACAAGCGCTCTTGACACAAAATCTGAGAAAATTGTGCAGGAGGCACTGGACAGAGTAATGATTAACCGTACTACTGTCATAGTAGCTCACCGCTTGAGCACAGTGAGGAATGCTGACACCATTGCTGTAATACATCAAGGAACGATTGCTGAAAAAGGACCGCATTGGGAGCTAATTAGGGATCCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAAGAAACCCATATTGTGTCAGAACATACTGGTCTAAATGTTCATGATTCTTTATCACAATTCATAAGTGCAGAATCTCCAAGAAGAAACAGTAGATCATCTCCAAGAAGAAATAGTAGTCCTATCTCATTCGCACTCTCATTTGGTATTCCTACCACAAGCAGTATGCTTGAAACAGCACCTGTAGAACCTGATGTTCCTGCTTCAGCACAATCAAAAGGGCCTGCCAAAGTCTCACTTCGACGACTGGCTTACCTGAACAAGCCAGAGATCCCAGTTCTGTTTCTAGGTACACTAGCTGCAGCAGTTAATGGGGTAATCTTCCCTATTTTTGGGAGTTTGATGGCAAGCGTAATCAAAACGTTCTTTGAGCCACCTCATGAACTCCGTAAAGATTCAAAGTTTTGGGCATTAATGTTTATTCTTCTTGGAATGACATCTTTATTGGCTAGTCCAGCAAGAGCATACCTTTTTGCTGTGGCAGGATGTAGGCTAATCAAACGAATCCGAGCCATGTGCTTTGAGAAGGTGGTTTACATGGAAATAAGTTGGTTTGATGAAGCTGAACACTCGAGTGGTGCCATTGGAGCAAGGCTTTCTACAGATGCAGCGTCTTTAAGAGGGCTGGTTGGAGATGTTCTAGGTTTGGTTGTTGAGAACATGGCAACTGCAATTTCTGGGCTGATCATTGCTTTTGTTGCAAATTGGCAACTGGCTCTTATAATCCTTGTTCTGTTTCCTTTATTAGGACTAAATGGATATTTACAAGTCCAGTTCATGAAAGGATTCAGTGAGGATGCCAAGAAAATGTATGAAGATGCGAGCCAAATAGCCAATGATGCTGTGGGGAGTATTCGGACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATTGAATTGTACCAGAAAAAATGTGAAGGCCCTGTTAAGGCAGGGATAAGACAAGGGTTAGTTACTGGGATAGGTTTTGGGCTATCACTATTTTTGCAGTTTTCAGTGTTTGCCTTAAGCTTTTATACTGGAGGTCTACTTGTTGGGGCAGGCAAGACAACATTCTCTGCTGTTTTCCAGGTTTTCTTTGCTCTCACTATGACTTCTATTGGACTTGCTCAAGCGACCTCCCTAGCACCTGATGCAAGTAAAGGAAGGGCCTCTGCTGCTTCCATATTTGCAATTCTTGACCGGAAATCAAAAATAGACTCTAGTGATAACTCTGGGATGACTATAGAACACTTGAAGGGAGAAATTGAATTTCACCATGTCAGTTTCAAGTATCCCAGTAGACCTGACGTGCATATTTTCAACAATCTTCGCTTGACCATTAGTCATGGCAAGACAATTGCTCTGGTTGGTGAAAGTGGAAGTGGGAAATCAACAGTGATCTCATTGATTCAAAGATTTTACAATCCTAATTCAGGTCACATTACATTGGATGGAATCAAAATCCAAAAACTGCAATTGAAATGGTTGAGGCAGCAAATGGGGCTGGTGAGCCAGGAGCCTCTGCTGTTTAACGACACTATCCGAGCCAACATTGCATATGGAAAGGATGGAGAGGCAACCGAGGTTGACATTATAGCTGCTGCAGAACTCGCAAATGCACACCAGTTCATTAGTAGTTTACGACATGGTTACGATACAATAACTGGTGAGCGAGGGGTCCAATTGTCCGGCGGACAGAAGCAAAGAATTGCTATTGCACGAGCTATTATGAAGGCACCAAAGATACTACTACTAGATGAAGCCACAAGTGCCCTTGATGCTGAATCTGAACGTGTGGTTCAAGATGCATTGGATCGAGTTATGGTGGATCGAACGACAATCGTGGTTGCTCACCGGTTATCCACAATTAAGGGTGCAGATTTAATTGCCGTGGTAAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATAAAACTTTGATCAATATCAGCAATGGCATTTATGCTTCTTTGATAGCATTACATGCAAGTGCCTCATCTTAG

Protein Analysis

1284

Amino Acids

138.6

Weight (kDa)

8.26

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 67 - 338 9.2e-58 ABC transporter transmembrane region
ABC_tran PF00005 406 - 554 5.7e-33 ABC transporter
ABC_membrane PF00664 718 - 990 5.7e-58 ABC transporter transmembrane region
ABC_tran PF00005 1058 - 1208 3e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1074, 1865, 2594
AccB1I GGYRCC 2 cut(s) 2450, 3589
AccB7I CCANNNNNTGG 2 cut(s) 691, 1328
AccBSI CCGCTC 1 cut(s) 1272
AccI GTMKAC 3 cut(s) 194, 2899, 3154
AclI AACGTT 2 cut(s) 581, 2234
AclWI GGATC 6 cut(s) 1388, 1832, 1845, 2137, 3675, 3690
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 2 cut(s) 1517, 3122
AcuI CTGAAG 4 cut(s) 1497, 1643, 2061, 2772
AcyI GRCGYC 2 cut(s) 704, 866
AfaI GTAC 6 cut(s) 141, 202, 910, 1726, 2164, 2774
AfeI AGCGCT 1 cut(s) 1663
AfiI CCNNNNNNNGG 8 cut(s) 23, 450, 691, 1328, 2204, 2618, 2800, 3287
AflII CTTAAG 2 cut(s) 329, 2878
AflIII ACRYGT 1 cut(s) 3646
AgeI ACCGGT 1 cut(s) 3708
AhdI GACNNNNNGTC 1 cut(s) 3195
AjiI CACGTC 1 cut(s) 3163
AjnI CCWGG 4 cut(s) 1054, 1407, 2940, 3366
AleI CACNNNNGTG 1 cut(s) 2445
Alw21I GWGCWC 1 cut(s) 1757
Alw26I GTCTC 7 cut(s) 400, 746, 1020, 1079, 1149, 1232, 2110
AlwI GGATC 6 cut(s) 1388, 1832, 1845, 2137, 3675, 3690
AlwNI CAGNNNCTG 2 cut(s) 38, 2054
Ama87I CYCGRG 2 cut(s) 1630, 2443
Aor51HI AGCGCT 1 cut(s) 1663
AoxI GGCC 5 cut(s) 801, 1396, 2093, 2791, 3021
ApoI RAATTY 2 cut(s) 1517, 3122
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
AseI ATTAAT 2 cut(s) 267, 2285
AsiGI ACCGGT 1 cut(s) 3708
Asp700I GAANNNNTTC 2 cut(s) 686, 2657
AspLEI GCGC 1 cut(s) 1664
AspS9I GGNCC 5 cut(s) 1814, 2093, 2792, 3021, 3532
AvaI CYCGRG 2 cut(s) 1630, 2443
AvaII GGWCC 2 cut(s) 1814, 3532
AxyI CCTNAGG 1 cut(s) 1536
BaeGI GKGCMC 1 cut(s) 3628
BalI TGGCCA 1 cut(s) 803
BamHI GGATCC 1 cut(s) 1837
BanI GGYRCC 2 cut(s) 2450, 3589
BarI GAAGNNNNNNTAC 2 cut(s) 2390, 2422
BauI CACGAG 3 cut(s) 1202, 1400, 3573
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 1757
BccI CCATC 7 cut(s) 17, 612, 1340, 1838, 2209, 3299, 3416
BceAI ACGGC 1 cut(s) 3728
BcgI CGANNNNNNTGC 2 cut(s) 2370, 2404
BciT130I CCWGG 4 cut(s) 1056, 1409, 2942, 3368
BciVI GTATCC 1 cut(s) 3156
BclI TGATCA 3 cut(s) 393, 2556, 3792
BcoDI GTCTC 7 cut(s) 400, 746, 1020, 1079, 1149, 1232, 2110
BfmI CTRYAG 7 cut(s) 374, 1605, 2055, 2172, 2472, 3096, 3456
BfoI RGCGCY 1 cut(s) 1665
BfrI CTTAAG 2 cut(s) 329, 2878
BfuI GTATCC 1 cut(s) 3156
BlpI GCTNAGC 1 cut(s) 1497
Bme1390I CCNGG 4 cut(s) 1056, 1409, 2942, 3368
Bme18I GGWCC 2 cut(s) 1814, 3532
BmeRI GACNNNNNGTC 1 cut(s) 3195
BmeT110I CYCGRG 2 cut(s) 1630, 2443
BmgBI CACGTC 1 cut(s) 3163
BmgT120I GGNCC 5 cut(s) 1814, 2093, 2792, 3021, 3532
BmiI GGNNCC 6 cut(s) 1413, 1839, 2452, 3372, 3533, 3591
BmrFI CCNGG 4 cut(s) 1056, 1409, 2942, 3368
BmrI ACTGGG 4 cut(s) 1437, 2141, 2838, 3144
BmuI ACTGGG 4 cut(s) 1437, 2141, 2838, 3144
BpiI GAAGAC 1 cut(s) 655
BpmI CTGGAG 2 cut(s) 420, 2913
Bpu1102I GCTNAGC 1 cut(s) 1497
BpuEI CTTGAG 2 cut(s) 1771, 2967
BsaBI GATNNNNATC 1 cut(s) 3797
BsaHI GRCGYC 2 cut(s) 704, 866
BsaJI CCNNGG 4 cut(s) 318, 709, 3435, 3744
BsaWI WCCGGW 2 cut(s) 3054, 3708
BsaXI ACNNNNNCTCC 6 cut(s) 18, 48, 806, 836, 960, 990
Bsc4I CCNNNNNNNGG 8 cut(s) 23, 450, 691, 1328, 2204, 2618, 2800, 3287
Bse118I RCCGGY 1 cut(s) 3708
Bse21I CCTNAGG 1 cut(s) 1536
Bse3DI GCAATG 7 cut(s) 48, 1446, 1776, 2559, 3405, 3762, 3811
Bse8I GATNNNNATC 1 cut(s) 3797
BseBI CCWGG 4 cut(s) 1056, 1409, 2942, 3368
BseDI CCNNGG 4 cut(s) 318, 709, 3435, 3744
BseJI GATNNNNATC 1 cut(s) 3797
BseLI CCNNNNNNNGG 8 cut(s) 23, 450, 691, 1328, 2204, 2618, 2800, 3287
BseMI GCAATG 7 cut(s) 48, 1446, 1776, 2559, 3405, 3762, 3811
BseMII CTCAG 7 cut(s) 30, 81, 1157, 1488, 1550, 1586, 1671
BseRI GAGGAG 3 cut(s) 137, 764, 984
BseSI GKGCMC 1 cut(s) 3628
BsgI GTGCAG 4 cut(s) 399, 1712, 1962, 3750
Bsh1285I CGRYCG 1 cut(s) 1199
BshFI GGCC 5 cut(s) 803, 1398, 2095, 2793, 3023
BshNI GGYRCC 2 cut(s) 2450, 3589
BshTI ACCGGT 1 cut(s) 3708
BsiEI CGRYCG 1 cut(s) 1199
BsiHKAI GWGCWC 1 cut(s) 1757
BsiHKCI CYCGRG 2 cut(s) 1630, 2443
BsiSI CCGG 3 cut(s) 3055, 3543, 3709
BslFI GGGAC 2 cut(s) 691, 1599
BslI CCNNNNNNNGG 8 cut(s) 23, 450, 691, 1328, 2204, 2618, 2800, 3287
BsmAI GTCTC 7 cut(s) 400, 746, 1020, 1079, 1149, 1232, 2110
BsmFI GGGAC 2 cut(s) 691, 1599
BsmI GAATGC 1 cut(s) 1771
BsnI GGCC 5 cut(s) 803, 1398, 2095, 2793, 3023
BsoBI CYCGRG 2 cut(s) 1630, 2443
Bsp1286I GDGCHC 2 cut(s) 1757, 3628
Bsp1720I GCTNAGC 1 cut(s) 1497
BspANI GGCC 5 cut(s) 803, 1398, 2095, 2793, 3023
BspCNI CTCAG 7 cut(s) 31, 80, 1158, 1489, 1549, 1585, 1672
BspHI TCATGA 3 cut(s) 1915, 2251, 2649
BspLI GGNNCC 6 cut(s) 1413, 1839, 2452, 3372, 3533, 3591
BspMAI CTGCAG 2 cut(s) 2176, 3460
BspPI GGATC 6 cut(s) 1388, 1832, 1845, 2137, 3675, 3690
BspT107I GGYRCC 2 cut(s) 2450, 3589
BspTI CTTAAG 2 cut(s) 329, 2878
BsrBI CCGCTC 1 cut(s) 1272
BsrDI GCAATG 7 cut(s) 48, 1446, 1776, 2559, 3405, 3762, 3811
BsrFI RCCGGY 1 cut(s) 3708
BssAI RCCGGY 1 cut(s) 3708
BssECI CCNNGG 4 cut(s) 318, 709, 3435, 3744
BssNI GRCGYC 2 cut(s) 704, 866
BssSI CACGAG 3 cut(s) 1202, 1400, 3573
BssT1I CCWWGG 1 cut(s) 318
Bst2BI CACGAG 3 cut(s) 1202, 1400, 3573
Bst2UI CCWGG 4 cut(s) 1056, 1409, 2942, 3368
Bst6I CTCTTC 1 cut(s) 2748
BstACI GRCGYC 2 cut(s) 704, 866
BstAFI CTTAAG 2 cut(s) 329, 2878
BstAPI GCANNNNNTGC 3 cut(s) 1253, 3005, 3836
BstC8I GCNNGC 7 cut(s) 801, 1503, 1859, 2097, 2221, 2695, 2914
BstDEI CTNAG 9 cut(s) 39, 67, 612, 1166, 1497, 1536, 1572, 1680, 3852
BstDSI CCRYGG 2 cut(s) 709, 3744
BstENI CCTNNNNNAGG 2 cut(s) 2616, 3285
BstH2I RGCGCY 1 cut(s) 1665
BstHHI GCGC 1 cut(s) 1664
BstMAI GTCTC 7 cut(s) 400, 746, 1020, 1079, 1149, 1232, 2110
BstMCI CGRYCG 1 cut(s) 1199
BstNI CCWGG 4 cut(s) 1056, 1409, 2942, 3368
BstNSI RCATGY 2 cut(s) 187, 3839
BstSCI CCNGG 4 cut(s) 1054, 1407, 2940, 3366
BstSFI CTRYAG 7 cut(s) 374, 1605, 2055, 2172, 2472, 3096, 3456
BstSLI GKGCMC 1 cut(s) 3628
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 2 cut(s) 1837, 2142
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 2 cut(s) 1837, 2142
Bsu36I CCTNAGG 1 cut(s) 1536
BsuI GTATCC 1 cut(s) 3156
BsuRI GGCC 5 cut(s) 803, 1398, 2095, 2793, 3023
BtgI CCRYGG 2 cut(s) 709, 3744
BtrI CACGTC 1 cut(s) 3163
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 8 cut(s) 36, 78, 396, 1700, 1764, 2668, 2874, 3255
Cac8I GCNNGC 7 cut(s) 801, 1503, 1859, 2097, 2221, 2695, 2914
CaiI CAGNNNCTG 2 cut(s) 38, 2054
CciI TCATGA 3 cut(s) 1915, 2251, 2649
CfoI GCGC 1 cut(s) 1664
Cfr10I RCCGGY 1 cut(s) 3708
Cfr13I GGNCC 5 cut(s) 1814, 2093, 2792, 3021, 3532
CseI GACGC 3 cut(s) 693, 855, 2472
Csp6I GTAC 6 cut(s) 140, 201, 909, 1725, 2163, 2773
CspAI ACCGGT 1 cut(s) 3708
CviQI GTAC 6 cut(s) 140, 201, 909, 1725, 2163, 2773
DdeI CTNAG 9 cut(s) 39, 67, 612, 1166, 1497, 1536, 1572, 1680, 3852
DriI GACNNNNNGTC 1 cut(s) 3195
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 1 cut(s) 2748
Eam1105I GACNNNNNGTC 1 cut(s) 3195
EarI CTCTTC 1 cut(s) 2748
EciI GGCGGA 2 cut(s) 951, 3561
Eco130I CCWWGG 1 cut(s) 318
Eco147I AGGCCT 1 cut(s) 1398
Eco47I GGWCC 2 cut(s) 1814, 3532
Eco47III AGCGCT 1 cut(s) 1663
Eco57I CTGAAG 4 cut(s) 1497, 1643, 2061, 2772
Eco81I CCTNAGG 1 cut(s) 1536
Eco88I CYCGRG 2 cut(s) 1630, 2443
EcoNI CCTNNNNNAGG 2 cut(s) 2616, 3285
EcoO109I RGGNCCY 3 cut(s) 2093, 2792, 3021
EcoRII CCWGG 4 cut(s) 1054, 1407, 2940, 3366
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 3664
ErhI CCWWGG 1 cut(s) 318
FalI AAGNNNNNCTT 2 cut(s) 2094, 2126
FaqI GGGAC 2 cut(s) 691, 1599
FauNDI CATATG 1 cut(s) 3412
FbaI TGATCA 3 cut(s) 393, 2556, 3792
FblI GTMKAC 3 cut(s) 194, 2899, 3154
GlaI GCGC 1 cut(s) 1663
GsuI CTGGAG 2 cut(s) 420, 2913
HaeII RGCGCY 1 cut(s) 1665
HaeIII GGCC 5 cut(s) 803, 1398, 2095, 2793, 3023
HapII CCGG 3 cut(s) 3055, 3543, 3709
HgaI GACGC 3 cut(s) 693, 855, 2472
HhaI GCGC 1 cut(s) 1664
Hin1I GRCGYC 2 cut(s) 704, 866
Hin6I GCGC 1 cut(s) 1662
HinP1I GCGC 1 cut(s) 1662
HincII GTYRAC 1 cut(s) 3442
HindII GTYRAC 1 cut(s) 3442
HindIII AAGCTT 3 cut(s) 152, 834, 2881
HpaII CCGG 3 cut(s) 3055, 3543, 3709
Hpy166II GTNNAC 9 cut(s) 195, 713, 1425, 2165, 2407, 2900, 3155, 3442, 3494
Hpy8I GTNNAC 9 cut(s) 195, 713, 1425, 2165, 2407, 2900, 3155, 3442, 3494
Hpy99I CGWCG 1 cut(s) 2118
HpyAV CCTTC 7 cut(s) 544, 2392, 2752, 2783, 3012, 3103, 3580
HpyCH4IV ACGT 5 cut(s) 459, 581, 2234, 3162, 3646
HpyF3I CTNAG 9 cut(s) 39, 67, 612, 1166, 1497, 1536, 1572, 1680, 3852
HpySE526I ACGT 5 cut(s) 459, 581, 2234, 3162, 3646
Hsp92I GRCGYC 2 cut(s) 704, 866
HspAI GCGC 1 cut(s) 1662
Ksp22I TGATCA 3 cut(s) 393, 2556, 3792
LmnI GCTCC 7 cut(s) 1057, 1244, 1431, 1825, 1847, 2459, 3370
MaeII ACGT 5 cut(s) 459, 581, 2234, 3162, 3646
MaeIII GTNAC 5 cut(s) 34, 1137, 2824, 3290, 3503
MbiI CCGCTC 1 cut(s) 1272
MfeI CAATTG 5 cut(s) 756, 2733, 3210, 3329, 3536
MflI RGATCY 2 cut(s) 1837, 2142
MhlI GDGCHC 2 cut(s) 1757, 3628
MlsI TGGCCA 1 cut(s) 803
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 3 cut(s) 219, 3065, 3768
MmeI TCCRAC 3 cut(s) 196, 1393, 2482
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 3664
MroXI GAANNNNTTC 2 cut(s) 686, 2657
MscI TGGCCA 1 cut(s) 803
MslI CAYNNNNRTG 4 cut(s) 188, 251, 2445, 3840
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 1 cut(s) 1496
MspCI CTTAAG 2 cut(s) 329, 2878
MspI CCGG 3 cut(s) 3055, 3543, 3709
MspR9I CCNGG 4 cut(s) 1056, 1409, 2942, 3368
MunI CAATTG 5 cut(s) 756, 2733, 3210, 3329, 3536
Mva1269I GAATGC 1 cut(s) 1771
MvaI CCWGG 4 cut(s) 1056, 1409, 2942, 3368
NdeI CATATG 1 cut(s) 3412
NlaIV GGNNCC 6 cut(s) 1413, 1839, 2452, 3372, 3533, 3591
NmuCI GTSAC 2 cut(s) 34, 3290
NsiI ATGCAT 1 cut(s) 3664
NspI RCATGY 2 cut(s) 187, 3839
OliI CACNNNNGTG 1 cut(s) 2445
PaeR7I CTCGAG 1 cut(s) 2443
PagI TCATGA 3 cut(s) 1915, 2251, 2649
PceI AGGCCT 1 cut(s) 1398
PctI GAATGC 1 cut(s) 1771
PdmI GAANNNNTTC 2 cut(s) 686, 2657
PflMI CCANNNNNTGG 2 cut(s) 691, 1328
PfoI TCCNGGA 1 cut(s) 1054
PinAI ACCGGT 1 cut(s) 3708
PleI GAGTC 3 cut(s) 219, 3065, 3767
PpsI GAGTC 3 cut(s) 219, 3065, 3767
PshBI ATTAAT 2 cut(s) 267, 2285
PsiI TTATAA 3 cut(s) 1074, 1865, 2594
Psp1406I AACGTT 2 cut(s) 581, 2234
Psp6I CCWGG 4 cut(s) 1054, 1407, 2940, 3366
PspGI CCWGG 4 cut(s) 1054, 1407, 2940, 3366
PspN4I GGNNCC 6 cut(s) 1413, 1839, 2452, 3372, 3533, 3591
PspPI GGNCC 5 cut(s) 1814, 2093, 2792, 3021, 3532
PspXI VCTCGAGB 1 cut(s) 2443
PstI CTGCAG 2 cut(s) 2176, 3460
PstNI CAGNNNCTG 2 cut(s) 38, 2054
PsuI RGATCY 2 cut(s) 1837, 2142
RsaI GTAC 6 cut(s) 141, 202, 910, 1726, 2164, 2774
RsaNI GTAC 6 cut(s) 140, 201, 909, 1725, 2163, 2773
RseI CAYNNNNRTG 4 cut(s) 188, 251, 2445, 3840
Sau96I GGNCC 5 cut(s) 1814, 2093, 2792, 3021, 3532
SchI GAGTC 3 cut(s) 219, 3065, 3768
ScrFI CCNGG 4 cut(s) 1056, 1409, 2942, 3368
SduI GDGCHC 2 cut(s) 1757, 3628
SfcI CTRYAG 7 cut(s) 374, 1605, 2055, 2172, 2472, 3096, 3456
Sfr274I CTCGAG 1 cut(s) 2443
SinI GGWCC 2 cut(s) 1814, 3532
SlaI CTCGAG 1 cut(s) 2443
SmiMI CAYNNNNRTG 4 cut(s) 188, 251, 2445, 3840
SmlI CTYRAG 5 cut(s) 329, 1750, 2443, 2878, 2982
SmoI CTYRAG 5 cut(s) 329, 1750, 2443, 2878, 2982
SseBI AGGCCT 1 cut(s) 1398
StuI AGGCCT 1 cut(s) 1398
StyD4I CCNGG 4 cut(s) 1054, 1407, 2940, 3366
StyI CCWWGG 1 cut(s) 318
TaiI ACGT 5 cut(s) 462, 584, 2237, 3165, 3649
TaqI TCGA 6 cut(s) 56, 1286, 2113, 2444, 3670, 3685
TatI WGTACW 1 cut(s) 908
TauI GCSGC 2 cut(s) 1070, 1496
TscAI CASTG 8 cut(s) 43, 78, 403, 1707, 1764, 2668, 2874, 3255
TseFI GTSAC 2 cut(s) 34, 3290
Tsp45I GTSAC 2 cut(s) 34, 3290
TspGWI ACGGA 2 cut(s) 35, 2249
TspRI CASTG 8 cut(s) 43, 78, 403, 1707, 1764, 2668, 2874, 3255
Van91I CCANNNNNTGG 2 cut(s) 691, 1328
Vha464I CTTAAG 2 cut(s) 329, 2878
VpaK11BI GGWCC 2 cut(s) 1814, 3532
VspI ATTAAT 2 cut(s) 267, 2285
XagI CCTNNNNNAGG 2 cut(s) 2616, 3285
XapI RAATTY 2 cut(s) 1517, 3122
XceI RCATGY 2 cut(s) 187, 3839
XcmI CCANNNNNNNNNTGG 1 cut(s) 2713
XhoI CTCGAG 1 cut(s) 2443
XmiI GTMKAC 3 cut(s) 194, 2899, 3154
XmnI GAANNNNTTC 2 cut(s) 686, 2657
Zsp2I ATGCAT 1 cut(s) 3664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.