Rroxscaffold_7G00164940

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000116
Physical Location & Seq
Reverse (-)
6827142 .. 6830385
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164940.1

Sequence Viewer

Length: 615 bp
ATGGGATTGGTAAGTCAAGAACCAGCACTGTTTGCTACTACTATAGCTGACAACATTATGTTTGGTAAAGAAGACGCCAACATGGATCAGATTATAGAAGCTGCTAAAGCTGCCAATGAACATTCTTTTATTCAAGGCTTACCTGATGGCTACAACACTCAGACCGGAGAGGGAGGAACTCAGCTTTCCGGAGGTCAGAAACAGAGAATAGCTATTGCAAGAGCAGTTCCAAGAAACCCGAAAATATTACTCCTGGATGAGGCCACAAGTGCTCTTGATGCAGAATCAGAACAAATTGTTCAACAGGCACTGGATAAAATTATGTCACATAGAACTACAATCATTGTTGCTCACTGGCTTTCCACTATCCGCGATGTGGATACAATCATTGTGCTGAAGAATGGTCAGGTTGTTGAGAGTGGCAACCATGCAGAACTGATGTGTAAGAAAGGTGAGTATGCAAGTATGGTTAGCTTGCAGGTATTGGAACATGTAGAAGGTTCTAGCTCACTATCTCGGTCAGTAAGTTCAACACATACAAGCTTTCGAGAAACCAAGGATAGCAATCAGCAGGATGTTAAGTCAATCACAACAAGAGAGCATGATCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

204

Amino Acids

22.2

Weight (kDa)

5.21

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 90 1e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
AccII CGCG 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 1 cut(s) 370
AclWI GGATC 2 cut(s) 93, 599
AcuI CTGAAG 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 259, 376
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 3 cut(s) 134, 302, 531
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 8 cut(s) 47, 101, 110, 184, 212, 474, 507, 543
AluI AGCT 8 cut(s) 47, 101, 110, 184, 212, 474, 507, 543
Alw21I GWGCWC 1 cut(s) 274
AlwI GGATC 2 cut(s) 93, 599
AlwNI CAGNNNCTG 1 cut(s) 310
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 101, 110
AsuHPI GGTGA 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 88, 97
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 373
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 469
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 2 cut(s) 102, 111
BlsI GCNGC 2 cut(s) 103, 112
Bme1390I CCNGG 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 555
BsaWI WCCGGW 2 cut(s) 164, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 376
Bse1I ACTGG 2 cut(s) 315, 359
Bse8I GATNNNNATC 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 2 cut(s) 262, 580
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 259, 376
BseMII CTCAG 2 cut(s) 173, 194
BseNI ACTGG 2 cut(s) 315, 359
BseXI GCAGC 2 cut(s) 88, 97
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 165, 189
BslI CCNNNNNNNGG 2 cut(s) 259, 376
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 274
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 85, 604
BspACI CCGC 1 cut(s) 370
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 172, 193
BspEI TCCGGA 1 cut(s) 188
BspFNI CGCG 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 469
BspPI GGATC 2 cut(s) 93, 599
BsrI ACTGG 2 cut(s) 315, 359
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 2 cut(s) 85, 604
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 159, 180
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 262, 580
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 2 cut(s) 88, 607
BstMBI GATC 2 cut(s) 85, 604
BstMWI GCNNNNNNNGC 5 cut(s) 32, 107, 110, 269, 278
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 88, 97
BstV2I GAAGAC 1 cut(s) 78
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 262, 580
BtsIMutI CAGTG 3 cut(s) 26, 308, 352
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 310
CseI GACGC 1 cut(s) 83
CviAII CATG 4 cut(s) 82, 428, 491, 602
DdeI CTNAG 2 cut(s) 159, 180
DpnI GATC 2 cut(s) 87, 606
DpnII GATC 2 cut(s) 85, 604
Eco130I CCWWGG 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 4 cut(s) 85, 431, 494, 605
FatI CATG 4 cut(s) 81, 427, 490, 601
Fnu4HI GCNGC 2 cut(s) 102, 111
FokI GGATG 2 cut(s) 269, 587
Fsp4HI GCNGC 2 cut(s) 102, 111
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 102, 111
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 165, 189
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 4 cut(s) 85, 431, 494, 605
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 1 cut(s) 284
HpaII CCGG 2 cut(s) 165, 189
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 4 cut(s) 90, 162, 198, 289
Hpy188III TCNNGA 4 cut(s) 17, 189, 275, 548
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 218, 281, 431, 461, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 107, 110, 269, 278
HpyF3I CTNAG 2 cut(s) 159, 180
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 4 cut(s) 85, 431, 494, 605
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 2 cut(s) 85, 604
Lsp1109I GCAGC 2 cut(s) 88, 97
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 324
MalI GATC 2 cut(s) 87, 606
MboI GATC 2 cut(s) 85, 604
MboII GAAGA 2 cut(s) 83, 409
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 3 cut(s) 294, 318, 610
MnlI CCTC 4 cut(s) 163, 167, 185, 253
MroI TCCGGA 1 cut(s) 188
MseI TTAA 2 cut(s) 579, 613
MspI CCGG 2 cut(s) 165, 189
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 5 cut(s) 32, 107, 110, 269, 278
NdeII GATC 2 cut(s) 85, 604
NlaIII CATG 4 cut(s) 85, 431, 494, 605
NmuCI GTSAC 1 cut(s) 324
NspI RCATGY 1 cut(s) 494
PciI ACATGT 1 cut(s) 490
PfeI GAWTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 2 cut(s) 103, 112
PscI ACATGT 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 310
SaqAI TTAA 2 cut(s) 579, 613
SatI GCNGC 2 cut(s) 102, 111
Sau3AI GATC 2 cut(s) 85, 604
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 274
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 42
Sse9I AATT 3 cut(s) 294, 318, 610
SsiI CCGC 1 cut(s) 370
SspI AATATT 1 cut(s) 246
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 547
TaqII GACCGA 1 cut(s) 507
TasI AATT 3 cut(s) 294, 318, 610
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 579, 613
Tru9I TTAA 2 cut(s) 579, 613
TscAI CASTG 3 cut(s) 33, 315, 359
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 2 cut(s) 101, 110
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 3 cut(s) 33, 315, 359
XagI CCTNNNNNAGG 1 cut(s) 257
XceI RCATGY 1 cut(s) 494
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.