pycom04g08750

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
10765240 .. 10765792
553 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g08750.2

Sequence Viewer

Length: 510 bp
ATGCCTCTTTCAACTGAGGCTGAGATCATTGAAGCTGCAAACCTGGCTAACGCTCACAAGTTCATATCTGCATTGCCGGAGGGTTACAAAACATTTGTTGGGGAACGGGGTGTTCAGTTATCTGGAGGACAGAAACAAAGAGTTGCAATTGCTAGGGCTTTATTGAGGAAGGCAGAGGTTATGCTTCTTGATGAGGCAACAAGCGCACTTGATGCTGAATCGGAGAGATCTATTCAAGAGGCACTAGAGCGTGCTTGCTCGGGAAAAACCACAATTGTGGTTGCACATAGACTATCGACTATCAGAAATGCTCATGTCATTGCTGTGATTGATGATGGAAAGGTGGCAGAGCAAGGATCCCACTCCCATCTATTGAAAAATTACCCGGATGGGTGTTACGCGCGCATGATACAGCTACAAAGATTCACCCACACCCAAGCCATCGGAATTGCATCAGGTTCAAGTTCATCAGTAAAACCCCGAGAAGAGGAAGAAAGAGAAGGAAAGTAG

Protein Analysis

170

Amino Acids

18.34

Weight (kDa)

6.6

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 401, 403
AclWI GGATC 2 cut(s) 351, 364
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 5 cut(s) 12, 32, 236, 376, 462
AjnI CCWGG 1 cut(s) 42
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 2 cut(s) 35, 415
AluI AGCT 2 cut(s) 35, 415
AlwI GGATC 2 cut(s) 351, 364
Ama87I CYCGRG 2 cut(s) 259, 480
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 3 cut(s) 206, 403, 405
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 418
AvaI CYCGRG 2 cut(s) 259, 480
BamHI GGATCC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 22
BccI CCATC 4 cut(s) 329, 375, 383, 449
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 386
BfaI CTAG 2 cut(s) 153, 245
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 44, 386
BmeT110I CYCGRG 2 cut(s) 259, 480
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 44, 386
BmsI GCATC 2 cut(s) 202, 461
BpmI CTGGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse3DI GCAATG 2 cut(s) 71, 318
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 2 cut(s) 71, 318
BseMII CTCAG 2 cut(s) 6, 12
BsePI GCGCGC 1 cut(s) 401
BseXI GCAGC 1 cut(s) 22
Bsh1236I CGCG 2 cut(s) 401, 403
BsiHKCI CYCGRG 2 cut(s) 259, 480
BsiSI CCGG 2 cut(s) 77, 386
BslI CCNNNNNNNGG 1 cut(s) 487
BsoBI CYCGRG 2 cut(s) 259, 480
Bsp143I GATC 3 cut(s) 24, 227, 356
BspCNI CTCAG 2 cut(s) 7, 13
BspFNI CGCG 2 cut(s) 401, 403
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 2 cut(s) 351, 364
BsrDI GCAATG 2 cut(s) 71, 318
BssHII GCGCGC 1 cut(s) 401
BssMI GATC 3 cut(s) 24, 227, 356
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 252, 256, 403
BstDEI CTNAG 2 cut(s) 15, 21
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 2 cut(s) 401, 403
BstHHI GCGC 3 cut(s) 206, 403, 405
BstKTI GATC 3 cut(s) 27, 230, 359
BstMBI GATC 3 cut(s) 24, 227, 356
BstMWI GCNNNNNNNGC 3 cut(s) 44, 203, 212
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 42, 384
BstUI CGCG 2 cut(s) 401, 403
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 227, 356
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 227, 356
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 3 cut(s) 252, 256, 403
CfoI GCGC 3 cut(s) 206, 403, 405
CviAII CATG 2 cut(s) 314, 406
CviJI RGCY 6 cut(s) 20, 35, 47, 158, 415, 440
CviKI_1 RGCY 6 cut(s) 20, 35, 47, 158, 415, 440
DdeI CTNAG 2 cut(s) 15, 21
DpnI GATC 3 cut(s) 26, 229, 358
DpnII GATC 3 cut(s) 24, 227, 356
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco88I CYCGRG 2 cut(s) 259, 480
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 317, 409
FaiI YATR 5 cut(s) 65, 182, 288, 315, 407
FatI CATG 2 cut(s) 313, 405
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 153, 245
GlaI GCGC 3 cut(s) 205, 402, 404
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 2 cut(s) 77, 386
HhaI GCGC 3 cut(s) 206, 403, 405
Hin1II CATG 2 cut(s) 317, 409
Hin6I GCGC 3 cut(s) 204, 401, 403
HinP1I GCGC 3 cut(s) 204, 401, 403
HinfI GANTC 2 cut(s) 218, 423
HpaII CCGG 2 cut(s) 77, 386
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 3 cut(s) 223, 305, 446
Hpy188III TCNNGA 4 cut(s) 123, 188, 236, 261
HpyAV CCTTC 2 cut(s) 163, 494
HpyCH4V TGCA 5 cut(s) 38, 71, 146, 284, 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 203, 212
HpyF3I CTNAG 2 cut(s) 15, 21
Hsp92II CATG 2 cut(s) 317, 409
HspAI GCGC 3 cut(s) 204, 401, 403
Kzo9I GATC 3 cut(s) 24, 227, 356
LpnPI CCDG 6 cut(s) 29, 56, 90, 108, 399, 441
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 202, 461
MaeI CTAG 2 cut(s) 153, 245
MaeIII GTNAC 2 cut(s) 83, 395
MalI GATC 3 cut(s) 26, 229, 358
MboI GATC 3 cut(s) 24, 227, 356
MboII GAAGA 2 cut(s) 497, 503
MfeI CAATTG 2 cut(s) 147, 273
MflI RGATCY 2 cut(s) 227, 356
MluCI AATT 4 cut(s) 147, 273, 379, 447
MnlI CCTC 9 cut(s) 10, 15, 73, 119, 159, 169, 187, 232, 481
MslI CAYNNNNRTG 2 cut(s) 275, 323
MspI CCGG 2 cut(s) 77, 386
MspR9I CCNGG 2 cut(s) 44, 386
MunI CAATTG 2 cut(s) 147, 273
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 2 cut(s) 401, 403
MwoI GCNNNNNNNGC 3 cut(s) 44, 203, 212
NciI CCSGG 1 cut(s) 386
NdeII GATC 3 cut(s) 24, 227, 356
NlaIII CATG 2 cut(s) 317, 409
NlaIV GGNNCC 1 cut(s) 358
OliI CACNNNNGTG 1 cut(s) 275
PauI GCGCGC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 218, 423
PkrI GCNGC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 358
PsuI RGATCY 2 cut(s) 227, 356
PteI GCGCGC 1 cut(s) 401
RseI CAYNNNNRTG 2 cut(s) 275, 323
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 3 cut(s) 24, 227, 356
ScrFI CCNGG 2 cut(s) 44, 386
SetI ASST 6 cut(s) 37, 45, 180, 345, 417, 460
SfaNI GCATC 2 cut(s) 202, 461
SmiMI CAYNNNNRTG 2 cut(s) 275, 323
Sse9I AATT 4 cut(s) 147, 273, 379, 447
SspMI CTAG 2 cut(s) 153, 245
StyD4I CCNGG 2 cut(s) 42, 384
TaqI TCGA 1 cut(s) 296
TasI AATT 4 cut(s) 147, 273, 379, 447
TfiI GAWTC 2 cut(s) 218, 423
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 52, 456
XspI CTAG 2 cut(s) 153, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.