Rh3BG007200

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
498918 .. 504771
5854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG007200.1

Sequence Viewer

Length: 3861 bp
ATGGCAGAGAAAAATGGCTTGGGTGGCAATACAAATATGGATGAAGGTGAAGCACCACCATCAGAAAGCAAAGCGGAAAAAGCAAACAGAAGCTGTAGCATCACTGAGATACAGGAAAACTCAAAGAAGAAGCAGACCAAAGGAAATGAGACTGTTCCATTTCTCAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTATTGATGACCATCGGCACAGTTGGTGCCATTGGGAATGGTTTGTGTATGCCCATTATGACTGTACTCTTTGGCCAACTGACTGATTCTTTTGGATATAACTACAATAGCAAAGACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTGTACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGGTTGGAAAGTTTTTACAACTAATATCGACATTCATTGGAGGCGTTGTCATAGCATTCATCAGAGGCTGGCTTCTAACCCTCGTCCTGATGTCCACTATTCCATTTCTTGTGGCAGCCGGAGCAATAATGTCCATTATCATAGTCAAAATGGCTTCCCGAGGACAAAATGCCTATGCGAAAGCTGCAACTGTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCATCATTTACCGGAGAGACACAAGCTATAACCAACTATAAGGAATACCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTGGGTTTTGGCATGTTTATGTTGGTTATGTTATCCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAACGAGGATATAAAGGAGGAGCTGTGGTCAATGTGATTGTTGCTGTGCTGGCTGGTTCCATGTCTCTAGGCCAGGTATCTCCCTGTATGAGTGCATTTGCTGCTGGTCAGGCTGCAGCCTTTAAGATGTTTGAGACTATAAAGAGGAAACCAGAGATAGATGCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGACATAGAGCTGAGGGATATTTACTTCAGTTATCCAACCAGACCGAACGAACAAATATTCCAAGGATTGACTCTGAGTATCCCTAGTGGCACAACTACAGCTTTGGTTGGGCAAAGTGGAAGCGGAAAGTCGACGGTGATCTGCCTGATAGAGAGATTCTATGATCCATGGGCTGGTGAGGTTCTCGTAGATGGTATCAACCTCAAAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTAGTCAGCCAGGAACCGGTGTTGTTTGCATCGAGCATCCGGGACAATATTTTATACGGAAAGGATGGTGCAACTTCTGAAGAGATAAGAGCAGCATTAGTACTTGCAAATGCTGCTAAGTTTATTGACAAATTGCCTCAGGGACTGGACACCATGGTTGGGGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGAGGGTTGCCATAGCTCGCGCAGTTCTTAAAGACCCACGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACTGAGCTAATTGTACAAGAGGCATTGGACCGAATTATGGTCAATCGAACTACTCTCATTGTTGCTCATCGTTTGAGCACGGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGGTTGAGAAAGGTCCACACTCGGAACTAGTTAGGAATCCTGATGGAGCCTACTCTCAGCTTATACACTTGCAAAAGTTAAGTGAAGACACAGAACAAGCTGCAGACCATCAAACAACGTCAGAAATCAGTAAAAAAAAATCATTGCAAAGATCGTTAAGTCATGATTCATCTGGAGCAGGAAGTAGCAGCCGCCACTCGTTCAAACTACCATTCGGATTTCCCACAGGACTTGAGGTAGTGGATATTGTTACAAAAGAACCAGAATCCCTTACAACAACTATGCAACAATCTCCAAAGGCTCCTATCCGCCGCCTTGCCTACCTTAACAAGCCAGAGATTCCAGTGCTAGCAATTGGAGCTACAGCTGCAATAGCCAATGGTGTGATATTTCCAGTTGTTGGTCTAATAATTTCCAGTGCCATCAAAACGTTATATGAACCACCTCATCAACTCAAAAAGGATTCTAAGTTTTGGGCACTAATGTATGTGACCCTTGGTTTGGCTTCCTTACTGGTGATTCCAGTAAGATCATACTTCTTTTCTGTGGCTGGATGCAAGCTAATTGAACGTATTAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGATTGGTTGGTTTGATGAGCCTCGGAGTGGCGAAATTGGTGCAAAGCTCTCGGCAAATGCAGCCACAGTGCGCTCCCTAGTTGGTGATGCACTTGCTCAGCTGATTGGAAATATTGCATCGGCAGTTGCCGGTTTAGTGATTGCTTTTGTTGCATGTTGGCAGCTGGCATTTATTGTCCTGGTATTATTCCCTCTTATTGGTGTCACAGGATATATGGAATTAAAATTTATAAAAGGGTTCAGCGCAGATTCAAAGATGATGTATGAGGAAGCAAGCCAGGTTGCTACCGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGCGCTGAAGAGAAGGTGGTGCAACAATACAACACAAAATGTGAAGGCCCTATGAGGACAGGGATAAGGCAAGGCATTATCAGTGGCATGGGATTCGGATTATCATTCGTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTATGTAGGAGCTCAACTTGTGGTGCATGGCAAAACAACATTCTTAGATGTTTTTCGGGTTTTCTTTTCTCTAACTATGGCTGCTATGACGATTTCTCAATCGAGTTCCTTAGCTCCTGATTCATCTAAAGCCAATGCTGCTACTGCTTCTATCTTTGCCATAATAGACCAGGAGTCAAAGATTGATCCGAGTGATGAGTCTGGGATGACAATGGACAATGTAAAGGGACATATTGAGCTTCGTAATGTATGCTTCAGGTATCCGTCCAGGCCAGACGTTCAGATTTTTCAAGACCTCAACCTAGTTATTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACCGTGATCTCACTGTTGCAAAGATTTTATGATCCTAACTCGGGTCACATTACACTCGATGGTGTTGAAATTTGGAAGTTCCAATTGAAGTGGCTGAGGCAACAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATTCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCAACAGAAGCTGAAATCCTGGCTGCATCCGAATCTGCCAATGCCCACAATTTCATTAGTGGTTTACAAGAGGGCTATGACACCATAGTGGGCGAACGAGGAGTCCAATTGTCAGGTGGGCAGAAGCAACGTGTATCGATTGCGCGTGCTATTGTTAAAAGCCCCAAGATTTTACTACTAGATGAGGCTACCAGTGCACTAGATGCTGAATCTGAGAGAGTAGTACAAGATGCATTAGACCTTGTCATGCTGAATCGGACAACAGTTGTGGTGGCACATAGATTATCTACAATCAGAAATGCAAGTGTAATTGCAGTTGTCAGAGACGGAGCTGTAGTAGAGAAAGGAAAGCATGAGACTTTGATTAGCGTCAAGGATGGTTTCTATGCCTCCTTAGTCGCATTACACAATACACATCAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

1286

Amino Acids

139.1

Weight (kDa)

6.91

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 70 - 342 1.1e-57 ABC transporter transmembrane region
ABC_tran PF00005 411 - 559 1e-31 ABC transporter
ABC_membrane PF00664 723 - 993 5e-52 ABC transporter transmembrane region
ABC_tran PF00005 1061 - 1210 8e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2657
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 2 cut(s) 1343, 2216
AccI GTMKAC 3 cut(s) 354, 1301, 2877
AccII CGCG 2 cut(s) 1629, 3580
AciI CCGC 5 cut(s) 74, 1293, 2008, 2125, 2128
AclI AACGTT 1 cut(s) 2246
AclWI GGATC 5 cut(s) 1328, 1403, 3071, 3278, 3364
AcoI YGGCCR 2 cut(s) 271, 408
AcsI RAATTY 2 cut(s) 2651, 3321
AcuI CTGAAG 4 cut(s) 1180, 1512, 2778, 3130
AfaI GTAC 5 cut(s) 264, 449, 1515, 1707, 3660
AflIII ACRYGT 1 cut(s) 3565
AgeI ACCGGT 1 cut(s) 1429
AgsI TTSAA 8 cut(s) 189, 764, 2020, 2384, 2679, 3182, 3320, 3340
AhdI GACNNNNNGTC 1 cut(s) 3064
AhlI ACTAGT 1 cut(s) 1843
AjnI CCWGG 9 cut(s) 357, 390, 1038, 1422, 2604, 2703, 3060, 3158, 3453
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AleI CACNNNNGTG 2 cut(s) 2411, 3521
AloI GAACNNNNNNTCC 4 cut(s) 1212, 1244, 3522, 3554
Alw21I GWGCWC 4 cut(s) 1681, 1772, 2905, 3634
Alw26I GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3753, 3785
Alw44I GTGCAC 2 cut(s) 1677, 3630
AlwI GGATC 5 cut(s) 1328, 1403, 3071, 3278, 3364
AlwNI CAGNNNCTG 5 cut(s) 93, 633, 1558, 1694, 3446
Ama87I CYCGRG 2 cut(s) 723, 3292
AoxI GGCC 5 cut(s) 271, 408, 1036, 2797, 3161
ApaLI GTGCAC 2 cut(s) 1677, 3630
ApoI RAATTY 2 cut(s) 2651, 3321
ArsI GACNNNNNNTTYG 4 cut(s) 2299, 2331, 3522, 3554
AsiGI ACCGGT 1 cut(s) 1429
AspLEI GCGC 5 cut(s) 1631, 2499, 2672, 2756, 3580
AspS9I GGNCC 3 cut(s) 1720, 1829, 2798
AsuC2I CCSGG 1 cut(s) 1454
AsuHPI GGTGA 8 cut(s) 59, 542, 1181, 1318, 1358, 1786, 2344, 2522
AsuNHI GCTAGC 1 cut(s) 2164
AvaI CYCGRG 2 cut(s) 723, 3292
AvaII GGWCC 2 cut(s) 1720, 1829
AxyI CCTNAGG 1 cut(s) 1551
BaeGI GKGCMC 3 cut(s) 1681, 2296, 3634
BalI TGGCCA 2 cut(s) 273, 410
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 2905
BbsI GAAGAC 1 cut(s) 1908
Bbv12I GWGCWC 4 cut(s) 1681, 1772, 2905, 3634
BbvCI CCTCAGC 2 cut(s) 1181, 3347
BcgI CGANNNNNNTGC 6 cut(s) 2447, 2457, 2481, 2491, 2827, 2861
BciT130I CCWGG 9 cut(s) 359, 392, 1040, 1424, 2606, 2705, 3062, 3160, 3455
BciVI GTATCC 2 cut(s) 1259, 3162
BcnI CCSGG 1 cut(s) 1454
BcoDI GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3753, 3785
BcuI ACTAGT 1 cut(s) 1843
BfmI CTRYAG 7 cut(s) 94, 756, 1080, 1266, 1917, 2178, 3768
BfuI GTATCC 2 cut(s) 1259, 3162
BlpI GCTNAGC 1 cut(s) 2523
BmcAI AGTACT 1 cut(s) 1515
Bme18I GGWCC 2 cut(s) 1720, 1829
BmeRI GACNNNNNGTC 1 cut(s) 3064
BmeT110I CYCGRG 2 cut(s) 723, 3292
BmgT120I GGNCC 3 cut(s) 1720, 1829, 2798
BmiI GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2118
BmtI GCTAGC 1 cut(s) 2168
BpiI GAAGAC 1 cut(s) 1908
BpmI CTGGAG 3 cut(s) 374, 525, 2010
Bpu10I CCTNAGC 3 cut(s) 1181, 3001, 3347
Bpu1102I GCTNAGC 1 cut(s) 2523
BpuEI CTTGAG 2 cut(s) 149, 2069
BpuMI CCSGG 1 cut(s) 1454
Bsa29I ATCGAT 1 cut(s) 3572
BsaBI GATNNNNATC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 8 cut(s) 333, 724, 1231, 1337, 1566, 2311, 2447, 3222
BsaWI WCCGGW 2 cut(s) 803, 1429
Bse118I RCCGGY 2 cut(s) 1429, 2555
Bse21I CCTNAGG 1 cut(s) 1551
Bse3DI GCAATG 4 cut(s) 561, 1791, 1958, 3411
Bse8I GATNNNNATC 1 cut(s) 209
BseBI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2606, 2705, 3062, 3160, 3455
BseCI ATCGAT 1 cut(s) 3572
BseDI CCNNGG 8 cut(s) 333, 724, 1231, 1337, 1566, 2311, 2447, 3222
BseJI GATNNNNATC 1 cut(s) 209
BseMI GCAATG 4 cut(s) 561, 1791, 1958, 3411
BseRI GAGGAG 2 cut(s) 999, 3549
BseSI GKGCMC 3 cut(s) 1681, 2296, 3634
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 1629, 3580
BshFI GGCC 5 cut(s) 273, 410, 1038, 2799, 3163
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 1429
BshVI ATCGAT 1 cut(s) 3572
BsiHKAI GWGCWC 4 cut(s) 1681, 1772, 2905, 3634
BsiHKCI CYCGRG 2 cut(s) 723, 3292
BsiSI CCGG 6 cut(s) 684, 804, 885, 1430, 1453, 2556
BslFI GGGAC 4 cut(s) 1469, 1569, 3132, 3375
BsmAI GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3753, 3785
BsmBI CGTCTC 1 cut(s) 3753
BsmFI GGGAC 4 cut(s) 1469, 1569, 3132, 3375
BsmI GAATGC 3 cut(s) 383, 620, 1786
BsnI GGCC 5 cut(s) 273, 410, 1038, 2799, 3163
Bso31I GGTCTC 1 cut(s) 343
BsoBI CYCGRG 2 cut(s) 723, 3292
Bsp1286I GDGCHC 5 cut(s) 1681, 1772, 2296, 2905, 3634
Bsp1407I TGTACA 1 cut(s) 1705
Bsp143I GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
Bsp1720I GCTNAGC 1 cut(s) 2523
Bsp19I CCATGG 2 cut(s) 1337, 1566
BspACI CCGC 5 cut(s) 74, 1293, 2008, 2125, 2128
BspANI GGCC 5 cut(s) 273, 410, 1038, 2799, 3163
BspDI ATCGAT 1 cut(s) 3572
BspFNI CGCG 2 cut(s) 1629, 3580
BspHI TCATGA 2 cut(s) 868, 1978
BspLI GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2118
BspMAI CTGCAG 2 cut(s) 1084, 1921
BspOI GCTAGC 1 cut(s) 2168
BspPI GGATC 5 cut(s) 1328, 1403, 3071, 3278, 3364
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 343
BsrDI GCAATG 4 cut(s) 561, 1791, 1958, 3411
BsrFI RCCGGY 2 cut(s) 1429, 2555
BsrGI TGTACA 1 cut(s) 1705
BssAI RCCGGY 2 cut(s) 1429, 2555
BssECI CCNNGG 8 cut(s) 333, 724, 1231, 1337, 1566, 2311, 2447, 3222
BssMI GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
BssT1I CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2311, 3222
Bst2UI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2606, 2705, 3062, 3160, 3455
Bst6I CTCTTC 2 cut(s) 1488, 2754
BstAPI GCANNNNNTGC 4 cut(s) 1067, 1526, 1685, 3638
BstAUI TGTACA 1 cut(s) 1705
BstDSI CCRYGG 2 cut(s) 1337, 1566
BstFNI CGCG 2 cut(s) 1629, 3580
BstHHI GCGC 5 cut(s) 1631, 2499, 2672, 2756, 3580
BstKTI GATC 9 cut(s) 1311, 1336, 1398, 1970, 2348, 3079, 3261, 3286, 3372
BstMAI GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3753, 3785
BstMBI GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
BstNI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2606, 2705, 3062, 3160, 3455
BstNSI RCATGY 2 cut(s) 904, 2583
BstSFI CTRYAG 7 cut(s) 94, 756, 1080, 1266, 1917, 2178, 3768
BstSLI GKGCMC 3 cut(s) 1681, 2296, 3634
BstUI CGCG 2 cut(s) 1629, 3580
BstV2I GAAGAC 1 cut(s) 1908
Bsu15I ATCGAT 1 cut(s) 3572
Bsu36I CCTNAGG 1 cut(s) 1551
BsuI GTATCC 2 cut(s) 1259, 3162
BsuRI GGCC 5 cut(s) 273, 410, 1038, 2799, 3163
BsuTUI ATCGAT 1 cut(s) 3572
BtgI CCRYGG 2 cut(s) 1337, 1566
BtsIMutI CAGTG 9 cut(s) 102, 501, 1679, 2166, 2239, 2499, 2839, 3263, 3634
CaiI CAGNNNCTG 5 cut(s) 93, 633, 1558, 1694, 3446
CciI TCATGA 2 cut(s) 868, 1978
CfoI GCGC 5 cut(s) 1631, 2499, 2672, 2756, 3580
Cfr10I RCCGGY 2 cut(s) 1429, 2555
Cfr13I GGNCC 3 cut(s) 1720, 1829, 2798
ClaI ATCGAT 1 cut(s) 3572
CseI GACGC 1 cut(s) 3793
Csp6I GTAC 5 cut(s) 263, 448, 1514, 1706, 3659
CspAI ACCGGT 1 cut(s) 1429
CspCI CAANNNNNGTGG 6 cut(s) 2029, 2064, 3323, 3358, 3684, 3719
CviQI GTAC 5 cut(s) 263, 448, 1514, 1706, 3659
DpnI GATC 9 cut(s) 1310, 1335, 1397, 1969, 2347, 3078, 3260, 3285, 3371
DpnII GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
DriI GACNNNNNGTC 1 cut(s) 3064
EaeI YGGCCR 2 cut(s) 271, 408
Eam1104I CTCTTC 2 cut(s) 1488, 2754
Eam1105I GACNNNNNGTC 1 cut(s) 3064
EarI CTCTTC 2 cut(s) 1488, 2754
EciI GGCGGA 1 cut(s) 2114
Ecl136II GAGCTC 1 cut(s) 2903
Eco130I CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2311, 3222
Eco24I GRGCYC 1 cut(s) 2905
Eco31I GGTCTC 1 cut(s) 343
Eco32I GATATC 2 cut(s) 196, 1789
Eco47I GGWCC 2 cut(s) 1720, 1829
Eco53kI GAGCTC 1 cut(s) 2903
Eco57I CTGAAG 4 cut(s) 1180, 1512, 2778, 3130
Eco81I CCTNAGG 1 cut(s) 1551
Eco88I CYCGRG 2 cut(s) 723, 3292
EcoICRI GAGCTC 1 cut(s) 2903
EcoO109I RGGNCCY 1 cut(s) 2798
EcoRII CCWGG 9 cut(s) 357, 390, 1038, 1422, 2604, 2703, 3060, 3158, 3453
EcoRV GATATC 2 cut(s) 196, 1789
EcoT14I CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2311, 3222
EcoT22I ATGCAT 1 cut(s) 3670
EcoT38I GRGCYC 1 cut(s) 2905
ErhI CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2311, 3222
Esp3I CGTCTC 1 cut(s) 3753
FaqI GGGAC 4 cut(s) 1469, 1569, 3132, 3375
FauNDI CATATG 1 cut(s) 3418
FblI GTMKAC 3 cut(s) 354, 1301, 2877
FriOI GRGCYC 1 cut(s) 2905
GlaI GCGC 5 cut(s) 1630, 2498, 2671, 2755, 3579
GsuI CTGGAG 3 cut(s) 374, 525, 2010
HaeIII GGCC 5 cut(s) 273, 410, 1038, 2799, 3163
HapII CCGG 6 cut(s) 684, 804, 885, 1430, 1453, 2556
HgaI GACGC 1 cut(s) 3793
HhaI GCGC 5 cut(s) 1631, 2499, 2672, 2756, 3580
Hin6I GCGC 5 cut(s) 1629, 2497, 2670, 2754, 3578
HinP1I GCGC 5 cut(s) 1629, 2497, 2670, 2754, 3578
HincII GTYRAC 1 cut(s) 1302
HindII GTYRAC 1 cut(s) 1302
HpaII CCGG 6 cut(s) 684, 804, 885, 1430, 1453, 2556
HphI GGTGA 8 cut(s) 59, 542, 1181, 1318, 1358, 1786, 2344, 2522
Hpy99I CGWCG 1 cut(s) 1306
HpyAV CCTTC 6 cut(s) 38, 559, 866, 2758, 2789, 3422
HpyCH4IV ACGT 5 cut(s) 1934, 2246, 2386, 3168, 3565
HpySE526I ACGT 5 cut(s) 1934, 2246, 2386, 3168, 3565
HspAI GCGC 5 cut(s) 1629, 2497, 2670, 2754, 3578
Kzo9I GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
MaeII ACGT 5 cut(s) 1934, 2246, 2386, 3168, 3565
MaeIII GTNAC 5 cut(s) 1169, 2065, 2305, 2629, 3296
MalI GATC 9 cut(s) 1310, 1335, 1397, 1969, 2347, 3078, 3260, 3285, 3371
MboI GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
MboII GAAGA 6 cut(s) 139, 475, 1505, 1793, 1913, 2771
MfeI CAATTG 3 cut(s) 2169, 3335, 3542
MhlI GDGCHC 5 cut(s) 1681, 1772, 2296, 2905, 3634
MlsI TGGCCA 2 cut(s) 273, 410
MluNI TGGCCA 2 cut(s) 273, 410
MlyI GAGTC 4 cut(s) 1234, 3074, 3098, 3546
MmeI TCCRAC 3 cut(s) 550, 1229, 3208
Mox20I TGGCCA 2 cut(s) 273, 410
Mph1103I ATGCAT 1 cut(s) 3670
MscI TGGCCA 2 cut(s) 273, 410
MseI TTAA 9 cut(s) 1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
MslI CAYNNNNRTG 3 cut(s) 905, 2411, 3521
Msp20I TGGCCA 2 cut(s) 273, 410
MspA1I CMGCKG 4 cut(s) 1591, 2183, 2527, 2590
MspI CCGG 6 cut(s) 684, 804, 885, 1430, 1453, 2556
MunI CAATTG 3 cut(s) 2169, 3335, 3542
Mva1269I GAATGC 3 cut(s) 383, 620, 1786
MvaI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2606, 2705, 3062, 3160, 3455
MvnI CGCG 2 cut(s) 1629, 3580
NciI CCSGG 1 cut(s) 1454
NcoI CCATGG 2 cut(s) 1337, 1566
NdeI CATATG 1 cut(s) 3418
NdeII GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
NheI GCTAGC 1 cut(s) 2164
NlaIV GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2118
NmeAIII GCCGAG 1 cut(s) 2456
NmuCI GTSAC 4 cut(s) 1169, 2305, 2629, 3296
NsiI ATGCAT 1 cut(s) 3670
NspI RCATGY 2 cut(s) 904, 2583
OliI CACNNNNGTG 2 cut(s) 2411, 3521
PagI TCATGA 2 cut(s) 868, 1978
PctI GAATGC 3 cut(s) 383, 620, 1786
PflFI GACNNNGTC 1 cut(s) 3677
PflMI CCANNNNNTGG 2 cut(s) 1343, 2216
PfoI TCCNGGA 1 cut(s) 1452
PinAI ACCGGT 1 cut(s) 1429
PleI GAGTC 4 cut(s) 1234, 3073, 3097, 3545
PpsI GAGTC 4 cut(s) 1234, 3073, 3097, 3545
PsiI TTATAA 1 cut(s) 2657
Psp124BI GAGCTC 1 cut(s) 2905
Psp1406I AACGTT 1 cut(s) 2246
Psp6I CCWGG 9 cut(s) 357, 390, 1038, 1422, 2604, 2703, 3060, 3158, 3453
PspGI CCWGG 9 cut(s) 357, 390, 1038, 1422, 2604, 2703, 3060, 3158, 3453
PspN4I GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2118
PspPI GGNCC 3 cut(s) 1720, 1829, 2798
PstI CTGCAG 2 cut(s) 1084, 1921
PstNI CAGNNNCTG 5 cut(s) 93, 633, 1558, 1694, 3446
PsyI GACNNNGTC 1 cut(s) 3677
PvuII CAGCTG 4 cut(s) 1591, 2183, 2527, 2590
RsaI GTAC 5 cut(s) 264, 449, 1515, 1707, 3660
RsaNI GTAC 5 cut(s) 263, 448, 1514, 1706, 3659
RseI CAYNNNNRTG 3 cut(s) 905, 2411, 3521
SacI GAGCTC 1 cut(s) 2905
SalI GTCGAC 1 cut(s) 1300
SaqAI TTAA 9 cut(s) 1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
Sau3AI GATC 9 cut(s) 1308, 1333, 1395, 1967, 2345, 3076, 3258, 3283, 3369
Sau96I GGNCC 3 cut(s) 1720, 1829, 2798
ScaI AGTACT 1 cut(s) 1515
SchI GAGTC 4 cut(s) 1234, 3074, 3098, 3546
SduI GDGCHC 5 cut(s) 1681, 1772, 2296, 2905, 3634
SfcI CTRYAG 7 cut(s) 94, 756, 1080, 1266, 1917, 2178, 3768
SinI GGWCC 2 cut(s) 1720, 1829
SmiMI CAYNNNNRTG 3 cut(s) 905, 2411, 3521
SmlI CTYRAG 2 cut(s) 164, 2048
SmoI CTYRAG 2 cut(s) 164, 2048
SpeI ACTAGT 1 cut(s) 1843
SsiI CCGC 5 cut(s) 74, 1293, 2008, 2125, 2128
SspI AATATT 4 cut(s) 1227, 1462, 1653, 2539
SstI GAGCTC 1 cut(s) 2905
StyI CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2311, 3222
TaiI ACGT 5 cut(s) 1937, 2249, 2389, 3171, 3568
TaqI TCGA 8 cut(s) 486, 593, 1301, 1445, 1738, 2993, 3309, 3572
TaqII GACCGA 2 cut(s) 1228, 1737
TatI WGTACW 4 cut(s) 262, 1513, 1705, 3658
TauI GCSGC 2 cut(s) 2010, 2130
Tru1I TTAA 9 cut(s) 1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
Tru9I TTAA 9 cut(s) 1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
TscAI CASTG 9 cut(s) 109, 508, 1686, 2166, 2239, 2499, 2839, 3270, 3634
TseFI GTSAC 4 cut(s) 1169, 2305, 2629, 3296
Tsp45I GTSAC 4 cut(s) 1169, 2305, 2629, 3296
TspGWI ACGGA 3 cut(s) 1485, 3144, 3777
TspRI CASTG 9 cut(s) 109, 508, 1686, 2166, 2239, 2499, 2839, 3270, 3634
Tth111I GACNNNGTC 1 cut(s) 3677
Van91I CCANNNNNTGG 2 cut(s) 1343, 2216
VneI GTGCAC 2 cut(s) 1677, 3630
VpaK11BI GGWCC 2 cut(s) 1720, 1829
XapI RAATTY 2 cut(s) 2651, 3321
XbaI TCTAGA 1 cut(s) 1660
XceI RCATGY 2 cut(s) 904, 2583
XcmI CCANNNNNNNNNTGG 2 cut(s) 931, 3548
XmiI GTMKAC 3 cut(s) 354, 1301, 2877
ZrmI AGTACT 1 cut(s) 1515
Zsp2I ATGCAT 1 cut(s) 3670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.