Rroxscaffold_5G00369500

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000116
Physical Location & Seq
Forward (+)
51311703 .. 51322408
10706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369500.1

Sequence Viewer

Length: 2289 bp
ATGGATTTTGTCTCTCAATACCTAGTGGTGCAAGCTGCTGCTTTGGTTGGAGAAAGCGGAAGTGGTAAATCAGCAGTTGCTATAGCTAGAGTAATTCTGAAGAACCCAAGAATTTTACTTTTAGATGAAGCCACAAGCGCTCTTGACACAGAATCTGAAAGAGTTGTTCAGGAGGCACTGGACAGAATTATGGTTGACCGGACTACTATCATTGTAGCCCATCGCTTGAGCACTGTAAGGAATGCTGATACCATTGCTGTCATACATCGAGGAACAATTGCTGAGAAAGGACCACATTCTGAGCTAAGCAGGGATCCCGATGGAGCATATAGCAGGCTTATAAGGTTGCAAGAAACTAGTTCTGTGTCAGAACACTCGGAACATACTTGTCTAAGTTCTGAGAAATCATCTCCAAGAAGTGGTAGTCATCACTCATTCTCAATCTCATATGGTAATCCTACTGCAAGTGGTATCCTTGAAACAACAACTGTAGAACCTGATGTTCCTGCTTCAGTACCATCAGAAGGGCCTCCAGGAGTCTCTCTTCGCCGCCTTGCTTACCTGAACAAGCCAGAGATACCGGTGCTACTTCTAGGTACTATAGTTGCAGCAGTCAATGGGGTAATCTTCCCTGTTTATGGTAGTTTGTTGTCAAGTGTAATCAAGACCTTCTTTGAGCCACCTCATGAACTCCGTAAGCATTCCAAGTTTTGGGCATCAATCTTTGTTGTTCTTGGAGTGGTATCTTTCTTGGCGCAATCATCAAGAGCATACCTCTTTGCCGTGGCGGGTTGCAGGTTAATAAGAAGAGTCCGAGCAATGTGCTTTGAGAAGGTGGTTTACATGGAAGTAAGTTGGTTCGATGAAGCTGAGCACTCAAGTGGTGCCATTGGGGCAAGGCTTTCTACAGATGCAGCGTCTTTGAGAGGGCTTGTCGGAGATGCTCTTGGTTTGTTGATTCAGAATATAGCAACAGCAATTACAGGGATGATTATTGCTTTTAGTGCAAATTGGCAACTTTCTCTTGTAATCCTTGTTCTGTTACCCTTATTAGGAGTAAATGGATATTTTCAAGTCCAGTACATGAAAGGATTCAGTGCAAATGCAAAGAAAATGTACGAGGATGCAAGCCAAGTAGCTAGTGATGCTGTGGGGAGTATTCGGACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATTGAGTTGTACAAGAAAAAATGTGACGGCCCTATTAAGACAGGGATAAGACAAGGGATAGTTACTGGGATAGGTTTCGGGGTATCACTCTTTTTACAGTTTTCAGTGTTTGCCTTAATTTTTTATACTGGAGGTCTACTTGTTGCTGCAGGCAAGACAACATTCTTTGCTGTTTTCCAGTCTTTCTTTGCTCTCACTATTGCTTCTCTCGGACTTGCTCAGTCGAGCTCCCTAGCACCTGATGTTAGTAAAGGAAAGAGCTCTGCTGCTTCCATATTTGCAATTCTTGACCGGAAATCAAAAATAGACTCTAGTGATAACTCGGGCATGACAATAGAGAATGTGAAGGGAGAAATTGAATTTCAGCATGTCAATTTCAAGTATCCTAGTAGACCTAAGGTGCCAATTTTCAATGATCTTTGCTTGACCATTAGTTGTGGCAAGACAATTGCTCTGGTTGGTGAAAGTGGGAGTGGAAAATCGACAGTGATCTCTTTGATCCAGAGATTTTACGACCCCAATGCTGGTCACATTACATTGGATGGAATCGAAATCCAGAAACTACAGTTAAGGTGGTTAAGAAAGCAAATGGGGCTGGTGAGCCAGGAGCCTCCGCTGTTTAATGACACCATCCGAGCCAACATTGCATATGGAAGGGGAGGAGAGGCAACCGAGGCTGAAGTTATAGCTGCAGCAGAATTGGCAAATGCACACGAGTTCATTAGTAGTTTACAACATGGTTATGATACAATAGTAGGAGAGCGAGGGGTCCAATTGTCCGGTGGACAGAAGCAAAGAGTTGCTATTGCACGAGCTATTTTGAAGGCACCAAAGATATTACTACTTGATGAAGCCACTAGTGCTCTTGATGCTGAATCCGAACGAGTGGTTCAAGATGCACTGGACCGAGTTATGGTGGATCGAACCACAGTGGTTGTTGCCCATCGGTTTTCCACAATAAAAGGTGCAGATTTAATTGCTGTGGTAAAAAATGGAGTCGTTGCAGAGAAAGGAAAGCATGAAAGTTTGATCAGAATCAACAATGGCATTTATGCTTCTTTGGTAGCATTACATGCAAGTGCCTCATCTTAG

Protein Analysis

762

Amino Acids

81.86

Weight (kDa)

8.28

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 196 - 468 2.8e-55 ABC transporter transmembrane region
ABC_tran PF00005 537 - 686 2.6e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 786
AccB1I GGYRCC 3 cut(s) 884, 1597, 2023
AccB7I CCANNNNNTGG 2 cut(s) 419, 711
AccI GTMKAC 2 cut(s) 1333, 1588
AciI CCGC 4 cut(s) 57, 550, 788, 1811
AclWI GGATC 4 cut(s) 308, 321, 1690, 2124
AcsI RAATTY 2 cut(s) 111, 1556
AcuI CTGAAG 4 cut(s) 119, 495, 1206, 1896
AfaI GTAC 5 cut(s) 516, 598, 1082, 1118, 1208
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 7 cut(s) 419, 524, 638, 711, 1052, 1721, 2110
AgeI ACCGGT 1 cut(s) 580
AgsI TTSAA 7 cut(s) 479, 1073, 1556, 1576, 1609, 2020, 2090
AhlI ACTAGT 2 cut(s) 356, 2054
AjnI CCWGG 2 cut(s) 532, 1800
AleI CACNNNNGTG 1 cut(s) 879
AluBI AGCT 9 cut(s) 35, 86, 304, 869, 1139, 1425, 1458, 1886, 2012
AluI AGCT 9 cut(s) 35, 86, 304, 869, 1139, 1425, 1458, 1886, 2012
Alw21I GWGCWC 5 cut(s) 233, 876, 1427, 1460, 2062
Alw26I GTCTC 2 cut(s) 16, 544
AlwI GGATC 4 cut(s) 308, 321, 1690, 2124
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 1519
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 2 cut(s) 527, 1225
ApeKI GCWGC 8 cut(s) 35, 38, 608, 914, 1343, 1463, 1886, 1889
ApoI RAATTY 2 cut(s) 111, 1556
AsiGI ACCGGT 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 1091
AspLEI GCGC 2 cut(s) 140, 757
AspS9I GGNCC 5 cut(s) 290, 527, 1226, 1966, 2101
AsuHPI GGTGA 3 cut(s) 1207, 1670, 1807
AvaI CYCGRG 1 cut(s) 1519
AvaII GGWCC 3 cut(s) 290, 1966, 2101
AxyI CCTNAGG 1 cut(s) 1593
BaeI ACNNNNGTAYC 4 cut(s) 588, 621, 1935, 1968
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 3 cut(s) 884, 1597, 2023
BanII GRGCYC 2 cut(s) 1427, 1460
BarI GAAGNNNNNNTAC 2 cut(s) 824, 856
BauI CACGAG 2 cut(s) 1910, 2007
Bbv12I GWGCWC 5 cut(s) 233, 876, 1427, 1460, 2062
BbvI GCAGC 8 cut(s) 22, 25, 620, 926, 1330, 1450, 1873, 1901
BccI CCATC 6 cut(s) 228, 314, 526, 1733, 1835, 2148
BceAI ACGGC 2 cut(s) 767, 1240
BcgI CGANNNNNNTGC 4 cut(s) 804, 838, 1700, 1734
BciT130I CCWGG 2 cut(s) 534, 1802
BciVI GTATCC 2 cut(s) 482, 1590
BclI TGATCA 1 cut(s) 2226
BcoDI GTCTC 2 cut(s) 16, 544
BcuI ACTAGT 2 cut(s) 356, 2054
BfaI CTAG 9 cut(s) 23, 87, 357, 593, 1140, 1430, 1509, 1584, 2055
BfmI CTRYAG 7 cut(s) 81, 489, 600, 906, 1344, 1760, 1887
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 786
BfuI GTATCC 2 cut(s) 482, 1590
BglI GCCNNNNNGGC 1 cut(s) 893
BisI GCNGC 9 cut(s) 36, 39, 550, 609, 915, 1344, 1464, 1887, 1890
BlpI GCTNAGC 2 cut(s) 305, 870
BlsI GCNGC 9 cut(s) 37, 40, 551, 610, 916, 1345, 1465, 1888, 1891
Bme1390I CCNGG 2 cut(s) 534, 1802
Bme18I GGWCC 3 cut(s) 290, 1966, 2101
BmeT110I CYCGRG 1 cut(s) 1519
BmgT120I GGNCC 5 cut(s) 290, 527, 1226, 1966, 2101
BmiI GGNNCC 6 cut(s) 315, 886, 1599, 1806, 1967, 2025
BmrFI CCNGG 2 cut(s) 534, 1802
BmrI ACTGGG 1 cut(s) 1272
BmsI GCATC 7 cut(s) 725, 901, 931, 1114, 1135, 2056, 2083
BmuI ACTGGG 1 cut(s) 1272
BplI GAGNNNNNCTC 2 cut(s) 759, 791
BpmI CTGGAG 2 cut(s) 516, 1347
Bpu1102I GCTNAGC 2 cut(s) 305, 870
BpuEI CTTGAG 2 cut(s) 247, 862
BsaBI GATNNNNATC 1 cut(s) 2231
BsaJI CCNNGG 2 cut(s) 783, 1869
BsaWI WCCGGW 4 cut(s) 198, 580, 1488, 1976
Bsc4I CCNNNNNNNGG 7 cut(s) 419, 524, 638, 711, 1052, 1721, 2110
Bse118I RCCGGY 1 cut(s) 580
Bse1I ACTGG 6 cut(s) 183, 1078, 1267, 1330, 1375, 2103
Bse21I CCTNAGG 1 cut(s) 1593
Bse3DI GCAATG 3 cut(s) 252, 825, 1839
Bse8I GATNNNNATC 1 cut(s) 2231
BseBI CCWGG 2 cut(s) 534, 1802
BseDI CCNNGG 2 cut(s) 783, 1869
BseGI GGATG 4 cut(s) 993, 1129, 1744, 1827
BseJI GATNNNNATC 1 cut(s) 2231
BseLI CCNNNNNNNGG 7 cut(s) 419, 524, 638, 711, 1052, 1721, 2110
BseMI GCAATG 3 cut(s) 252, 825, 1839
BseMII CTCAG 5 cut(s) 273, 291, 390, 861, 1430
BseNI ACTGG 6 cut(s) 183, 1078, 1267, 1330, 1375, 2103
BseRI GAGGAG 1 cut(s) 1872
BseXI GCAGC 8 cut(s) 22, 25, 620, 926, 1330, 1450, 1873, 1901
BsgI GTGCAG 1 cut(s) 2184
BshFI GGCC 2 cut(s) 529, 1227
BshNI GGYRCC 3 cut(s) 884, 1597, 2023
BshTI ACCGGT 1 cut(s) 580
BsiHKAI GWGCWC 5 cut(s) 233, 876, 1427, 1460, 2062
BsiHKCI CYCGRG 1 cut(s) 1519
BsiSI CCGG 4 cut(s) 199, 581, 1489, 1977
BslI CCNNNNNNNGG 7 cut(s) 419, 524, 638, 711, 1052, 1721, 2110
BsmAI GTCTC 2 cut(s) 16, 544
BsmI GAATGC 2 cut(s) 247, 700
BsnI GGCC 2 cut(s) 529, 1227
BsoBI CYCGRG 1 cut(s) 1519
Bsp1286I GDGCHC 5 cut(s) 233, 876, 1427, 1460, 2062
Bsp1407I TGTACA 1 cut(s) 1206
Bsp143I GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
Bsp1720I GCTNAGC 2 cut(s) 305, 870
BspACI CCGC 4 cut(s) 57, 550, 788, 1811
BspANI GGCC 2 cut(s) 529, 1227
BspCNI CTCAG 5 cut(s) 274, 292, 391, 862, 1429
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 6 cut(s) 315, 886, 1599, 1806, 1967, 2025
BspMAI CTGCAG 2 cut(s) 1348, 1891
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 4 cut(s) 308, 321, 1690, 2124
BspT107I GGYRCC 3 cut(s) 884, 1597, 2023
BsrDI GCAATG 3 cut(s) 252, 825, 1839
BsrFI RCCGGY 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 1206
BsrI ACTGG 6 cut(s) 183, 1078, 1267, 1330, 1375, 2103
BssAI RCCGGY 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 783, 1869
BssMI GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
BssSI CACGAG 2 cut(s) 1910, 2007
Bst2BI CACGAG 2 cut(s) 1910, 2007
Bst2UI CCWGG 2 cut(s) 534, 1802
Bst4CI ACNGT 6 cut(s) 235, 490, 1296, 1684, 1764, 2128
Bst6I CTCTTC 3 cut(s) 549, 802, 1182
BstAPI GCANNNNNTGC 1 cut(s) 2270
BstAUI TGTACA 1 cut(s) 1206
BstC8I GCNNGC 4 cut(s) 33, 335, 1129, 1348
BstDEI CTNAG 9 cut(s) 282, 300, 305, 392, 399, 870, 1416, 1593, 2286
BstDSI CCRYGG 1 cut(s) 783
BstF5I GGATG 4 cut(s) 993, 1129, 1744, 1827
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 757
BstKTI GATC 6 cut(s) 316, 1615, 1689, 1698, 2119, 2229
BstMAI GTCTC 2 cut(s) 16, 544
BstMBI GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
BstNI CCWGG 2 cut(s) 534, 1802
BstNSI RCATGY 2 cut(s) 1568, 2273
BstSCI CCNGG 2 cut(s) 532, 1800
BstSFI CTRYAG 7 cut(s) 81, 489, 600, 906, 1344, 1760, 1887
BstV1I GCAGC 8 cut(s) 22, 25, 620, 926, 1330, 1450, 1873, 1901
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 1593
BsuI GTATCC 2 cut(s) 482, 1590
BsuRI GGCC 2 cut(s) 529, 1227
BtgI CCRYGG 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 206
BtsCI GGATG 4 cut(s) 993, 1129, 1744, 1827
BtsIMutI CAGTG 7 cut(s) 176, 231, 1102, 1308, 1689, 2096, 2133
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 4 cut(s) 33, 335, 1129, 1348
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 685
CfoI GCGC 2 cut(s) 140, 757
Cfr10I RCCGGY 1 cut(s) 580
Cfr13I GGNCC 5 cut(s) 290, 527, 1226, 1966, 2101
CseI GACGC 1 cut(s) 906
Csp6I GTAC 5 cut(s) 515, 597, 1081, 1117, 1207
CspAI ACCGGT 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 2113, 2148
CviAII CATG 8 cut(s) 686, 844, 1084, 1525, 1565, 1934, 2216, 2270
CviQI GTAC 5 cut(s) 515, 597, 1081, 1117, 1207
DdeI CTNAG 9 cut(s) 282, 300, 305, 392, 399, 870, 1416, 1593, 2286
DpnI GATC 6 cut(s) 315, 1614, 1688, 1697, 2118, 2228
DpnII GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
Eam1104I CTCTTC 3 cut(s) 549, 802, 1182
EarI CTCTTC 3 cut(s) 549, 802, 1182
Ecl136II GAGCTC 2 cut(s) 1425, 1458
Eco24I GRGCYC 2 cut(s) 1427, 1460
Eco47I GGWCC 3 cut(s) 290, 1966, 2101
Eco47III AGCGCT 1 cut(s) 139
Eco53kI GAGCTC 2 cut(s) 1425, 1458
Eco57I CTGAAG 4 cut(s) 119, 495, 1206, 1896
Eco81I CCTNAGG 1 cut(s) 1593
Eco88I CYCGRG 1 cut(s) 1519
EcoICRI GAGCTC 2 cut(s) 1425, 1458
EcoO109I RGGNCCY 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 532, 1800
EcoT38I GRGCYC 2 cut(s) 1427, 1460
FaeI CATG 8 cut(s) 689, 847, 1087, 1528, 1568, 1937, 2219, 2273
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 8 cut(s) 685, 843, 1083, 1524, 1564, 1933, 2215, 2269
FauI CCCGC 1 cut(s) 781
FauNDI CATATG 2 cut(s) 448, 1846
FbaI TGATCA 1 cut(s) 2226
FblI GTMKAC 2 cut(s) 1333, 1588
Fnu4HI GCNGC 9 cut(s) 36, 39, 550, 609, 915, 1344, 1464, 1887, 1890
FokI GGATG 4 cut(s) 1000, 1136, 1751, 1814
FriOI GRGCYC 2 cut(s) 1427, 1460
Fsp4HI GCNGC 9 cut(s) 36, 39, 550, 609, 915, 1344, 1464, 1887, 1890
FspBI CTAG 9 cut(s) 23, 87, 357, 593, 1140, 1430, 1509, 1584, 2055
GlaI GCGC 2 cut(s) 139, 756
GluI GCNGC 9 cut(s) 36, 39, 550, 609, 915, 1344, 1464, 1887, 1890
GsuI CTGGAG 2 cut(s) 516, 1347
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 2 cut(s) 529, 1227
HapII CCGG 4 cut(s) 199, 581, 1489, 1977
HgaI GACGC 1 cut(s) 906
HhaI GCGC 2 cut(s) 140, 757
Hin1II CATG 8 cut(s) 689, 847, 1087, 1528, 1568, 1937, 2219, 2273
Hin6I GCGC 2 cut(s) 138, 755
HinP1I GCGC 2 cut(s) 138, 755
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HpaII CCGG 4 cut(s) 199, 581, 1489, 1977
HphI GGTGA 3 cut(s) 1207, 1670, 1807
Hpy166II GTNNAC 6 cut(s) 196, 841, 1334, 1589, 1928, 1982
Hpy8I GTNNAC 6 cut(s) 196, 841, 1334, 1589, 1928, 1982
HpyAV CCTTC 7 cut(s) 518, 679, 826, 1186, 1537, 1845, 2014
HpyCH4III ACNGT 6 cut(s) 235, 490, 1296, 1684, 1764, 2128
HpyF3I CTNAG 9 cut(s) 282, 300, 305, 392, 399, 870, 1416, 1593, 2286
Hsp92II CATG 8 cut(s) 689, 847, 1087, 1528, 1568, 1937, 2219, 2273
HspAI GCGC 2 cut(s) 138, 755
Ksp22I TGATCA 1 cut(s) 2226
Kzo9I GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
LmnI GCTCC 3 cut(s) 323, 1430, 1804
Lsp1109I GCAGC 8 cut(s) 22, 25, 620, 926, 1330, 1450, 1873, 1901
LweI GCATC 7 cut(s) 725, 901, 931, 1114, 1135, 2056, 2083
MaeI CTAG 9 cut(s) 23, 87, 357, 593, 1140, 1430, 1509, 1584, 2055
MaeIII GTNAC 4 cut(s) 1041, 1220, 1258, 1724
MalI GATC 6 cut(s) 315, 1614, 1688, 1697, 2118, 2228
MboI GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
MboII GAAGA 5 cut(s) 112, 536, 619, 819, 1199
MfeI CAATTG 4 cut(s) 276, 1167, 1644, 1970
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 5 cut(s) 233, 876, 1427, 1460, 2062
MlyI GAGTC 4 cut(s) 546, 819, 1499, 2202
MmeI TCCRAC 2 cut(s) 28, 916
MroXI GAANNNNTTC 1 cut(s) 1091
MseI TTAA 7 cut(s) 800, 1233, 1313, 1766, 1775, 1818, 2171
MslI CAYNNNNRTG 3 cut(s) 879, 1938, 2274
MspA1I CMGCKG 1 cut(s) 1813
MspI CCGG 4 cut(s) 199, 581, 1489, 1977
MspR9I CCNGG 2 cut(s) 534, 1802
MunI CAATTG 4 cut(s) 276, 1167, 1644, 1970
Mva1269I GAATGC 2 cut(s) 247, 700
MvaI CCWGG 2 cut(s) 534, 1802
NdeI CATATG 2 cut(s) 448, 1846
NdeII GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
NlaIII CATG 8 cut(s) 689, 847, 1087, 1528, 1568, 1937, 2219, 2273
NlaIV GGNNCC 6 cut(s) 315, 886, 1599, 1806, 1967, 2025
NmuCI GTSAC 2 cut(s) 1220, 1724
NspI RCATGY 2 cut(s) 1568, 2273
OliI CACNNNNGTG 1 cut(s) 879
PagI TCATGA 1 cut(s) 685
PctI GAATGC 2 cut(s) 247, 700
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 6 cut(s) 152, 958, 1092, 1743, 2072, 2232
PflMI CCANNNNNTGG 2 cut(s) 419, 711
PfoI TCCNGGA 1 cut(s) 532
PinAI ACCGGT 1 cut(s) 580
PkrI GCNGC 9 cut(s) 37, 40, 551, 610, 916, 1345, 1465, 1888, 1891
PleI GAGTC 4 cut(s) 545, 818, 1499, 2201
PpsI GAGTC 4 cut(s) 545, 818, 1499, 2201
PsiI TTATAA 1 cut(s) 341
Psp124BI GAGCTC 2 cut(s) 1427, 1460
Psp6I CCWGG 2 cut(s) 532, 1800
PspGI CCWGG 2 cut(s) 532, 1800
PspN4I GGNNCC 6 cut(s) 315, 886, 1599, 1806, 1967, 2025
PspPI GGNCC 5 cut(s) 290, 527, 1226, 1966, 2101
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PstI CTGCAG 2 cut(s) 1348, 1891
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 5 cut(s) 516, 598, 1082, 1118, 1208
RsaNI GTAC 5 cut(s) 515, 597, 1081, 1117, 1207
RseI CAYNNNNRTG 3 cut(s) 879, 1938, 2274
SacI GAGCTC 2 cut(s) 1427, 1460
SaqAI TTAA 7 cut(s) 800, 1233, 1313, 1766, 1775, 1818, 2171
SatI GCNGC 9 cut(s) 36, 39, 550, 609, 915, 1344, 1464, 1887, 1890
Sau3AI GATC 6 cut(s) 313, 1612, 1686, 1695, 2116, 2226
Sau96I GGNCC 5 cut(s) 290, 527, 1226, 1966, 2101
SchI GAGTC 4 cut(s) 546, 819, 1499, 2202
ScrFI CCNGG 2 cut(s) 534, 1802
SduI GDGCHC 5 cut(s) 233, 876, 1427, 1460, 2062
SfaNI GCATC 7 cut(s) 725, 901, 931, 1114, 1135, 2056, 2083
SfcI CTRYAG 7 cut(s) 81, 489, 600, 906, 1344, 1760, 1887
SinI GGWCC 3 cut(s) 290, 1966, 2101
SmiMI CAYNNNNRTG 3 cut(s) 879, 1938, 2274
SmlI CTYRAG 2 cut(s) 226, 877
SmoI CTYRAG 2 cut(s) 226, 877
SpeI ACTAGT 2 cut(s) 356, 2054
SsiI CCGC 4 cut(s) 57, 550, 788, 1811
SspMI CTAG 9 cut(s) 23, 87, 357, 593, 1140, 1430, 1509, 1584, 2055
SstI GAGCTC 2 cut(s) 1427, 1460
StyD4I CCNGG 2 cut(s) 532, 1800
TaaI ACNGT 6 cut(s) 235, 490, 1296, 1684, 1764, 2128
TaqI TCGA 6 cut(s) 268, 861, 1421, 1679, 1746, 2119
TaqII GACCGA 1 cut(s) 2118
TatI WGTACW 2 cut(s) 1080, 1206
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 6 cut(s) 152, 958, 1092, 1743, 2072, 2232
Tru1I TTAA 7 cut(s) 800, 1233, 1313, 1766, 1775, 1818, 2171
Tru9I TTAA 7 cut(s) 800, 1233, 1313, 1766, 1775, 1818, 2171
TscAI CASTG 7 cut(s) 183, 238, 1102, 1308, 1689, 2103, 2133
TseFI GTSAC 2 cut(s) 1220, 1724
TseI GCWGC 8 cut(s) 35, 38, 608, 914, 1343, 1463, 1886, 1889
Tsp45I GTSAC 2 cut(s) 1220, 1724
TspDTI ATGAA 7 cut(s) 141, 702, 879, 1100, 1906, 2061, 2232
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 7 cut(s) 183, 238, 1102, 1308, 1689, 2103, 2133
Van91I CCANNNNNTGG 2 cut(s) 419, 711
VpaK11BI GGWCC 3 cut(s) 290, 1966, 2101
XapI RAATTY 2 cut(s) 111, 1556
XceI RCATGY 2 cut(s) 1568, 2273
XcmI CCANNNNNNNNNTGG 1 cut(s) 1976
XmiI GTMKAC 2 cut(s) 1333, 1588
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 9 cut(s) 23, 87, 357, 593, 1140, 1430, 1509, 1584, 2055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.