MD09G1290100.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
37097646 .. 37104601
6956 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1290100.v1.1.491

Sequence Viewer

Length: 3891 bp
ATGGCCCAGGAAAGTGGCGTGGATGGGGCTACGCCTCAAGAGCATGAGGACATCACTTCAAGAAGCCAAGTAGAAGTAGAGAAAAGCACCGACACGAATGGGGATCATCAAGGCTCAGACAAGAGCAGCGGAGATGAGAAACTTGAAAAAGTTCCATTTTCCAAGCTATTTTCATTTGCAGATAAGACTGATACTATATTGATGCTCGCCGGCACAATTGGTGCCATTGGGAATGGCTTGGGGATGCCCCTTATGACGATATTATTGGGGGAGATGATCAATTCTTTTGGATCTAATCAAAACAATAAAGACATAGTTAGTGCTGTTTCCAAGGTCTCTCTAAAATATGTCTATTTGGCAATCGGGACAGGTGTGGCCGCAAGTCTTCAGGTCTCTTGCTGGATGGTAACAGGGGAAAGACAAGCTGCAAGGATAAGGGGTTTGTATTTGAAAACAATTTTGAGACAAGACGTTGCTTTCTTTGATTTGGAAACAAATACTGGAGAGGTCATTGGGAGGATGTCTGGCGACACTGTTCTCATACAAGATGCCATGGGCGAGAAGGTTGGAAAATTTTTACAACTATTTTCAACATTCATTGGAGGGTTTATAATAGCATTCATCAAAGGATGGCTTCTTACCCTTGTCATGTTATCCTCGATTCCTCTGCTTGTGGCAGCTGGTGCAGCTATGTCCATCATTATATCCAAGATGGCAACCCGTGGACAAAGTGCTTATGCAAAAGCAGCAATTGTAGTTGAACAGACGATAGGCTCCATCAGAACCGTTGCATCCTTCACTGGGGAAAAGCAAGCAACAACAAATTACAAAAAATATCTTGCGGATGCTTACAAATCAGGTGTTTACGAAGGTACTGCTGCTGGAGCATGTTTTGGCATGGTTATGCTAGTTGTGTTCTGCACTTATGCCTTGGCGGTATGGTTTGGTTCAAGAATGGTAAGGAATAATGGATATTCCGGGGGTGACGTGCTGAATGTGATTGTTGCTGTTTTGACTGGATCCATGTCTCTGGGGCAAGCATCACCGTGCTTGAGTGCATTCGCTGCTGGTCAAGCTGCAGCATTTAAGATGTTTGAGACTATCAGTAGGAAACCAGAGATTGATGCTTCTGACGAAAAAGGAAAGACATTGGATGACATTCGTGGAGATATAGATCTAAGAGAGGTTTACTTCAGTTACCCAGCCAGACCAGATGAACCAATATTCGACGGGTTCTGTCTTCATATCTCTAGTGGCACCACTGCAGCTTTGGTTGGACAAAGTGGAAGTGGGAAGTCAACAGTCATCAGTCTGATAGAGAGATTTTATGATCCACAAGCTGGTGAAGTGTTGATAGATGGCATAAACCTAAAAGAATTTCAGGTGAAATGGATTCGGAGTAAAATTGGTCTCGTCAGCCAGGAACCCGTACTGTTCGCATCCAGCATTATGGACAATATTGCCTATGGAAAGGATGGTGCTACCATTGAAGAGATAAAAGCAGCAGCTGAACTTGCAAACGCCTCCAAATTTATCGATAAATTGCCTCAGGGCATTAACACCATGGTCGGTGAGCATGGAACTCAGCTATCTGGTGGGCAGAAGCAGAGAATTGCTATAGCAAGAGCAATTTTGAAAGATCCACGAATTTTACTTTTGGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAGAGGATAGTTCAAGAAGCATTGGATCGGATTATGGTCAACAGAACTACTGTTATTGTTGCTCATCGTTTGAGCACGGTGAGGAATGCAGATGTGATTGCTGTCATTCATAAAGGAAAGATGGTTGAAAAAGGCTCGCACTCAGAATTACTCAAGGATCCTGAAGGAGCATACTCTCAACTTATACGCTTGCAAGAAGTAAACAAGGGTTCAGATCAAACAGGAGAAGTTCAAAACAAATCTGATATAACTGCTGAATCTTTTAGACAATCAAGTCTAAGAATGTCGTTACGAAGATCCATAAGTCGGAATTCCTCTGTAGGAAATAGCAGCCGCCATTCATTTTCAGCTGCCTTTGGTTTACCCATAGGACATGCTAGCATGCATGGCACTACATTGGCAGAACCAGAGGCCGCTGCCCTGGCATCAGAGCAACCTCCAAAGGTCTCTCTCCTCCGCCTCGCTGCCCTCAACAAGCCCGAGATTCCAGCACTTCTTCTTGGAACTTTAGCTGCAACCGCCAATGGTGTCATACTTCCAATTTTCGGTGTGCTTATTTCCAGGGTAATAAAGACTTTGTATGAACCACCTCGTCAACAAAAGAAAGATTCAGAGTTTTGGGCAATTATTTTTATGGTACTTGGTGTGTCATCATTTCTGGTGATCCCAGCACGAGCATACTTCTTTTCGGTTGCCGGTAGTAAGTTAATTGAACGTATCAGATTGATGTGTTTTGAGAGAGTGGTTCACATGGAAGTTGGGTGGTTTGATGAGCCTGAGAACTCAAGTGGTTCAGTTGGTGCGAGGCTCTCAGCAGATGCAGCAATAGTGCGGGCCCTTGTTGGAGATGCACTAGCTCAGATTGTTAATAGCATTGCGACCGCAATTGCAGGTTTGTTCATTGCTTTCATTTCATGCTGGCAGCTGGCATTTATTATCCTCGCATTGATTCCTCTGATCGGAGTCAACGGATATGTTCAAGCAAAGTTCATGAAAGGATTCAGTGCCGATGCAAAGATGATGTATGAAGAAGCAAGCCAAGTTGCTAATGACGCAGTTGGGAGCATACGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTGTACAGAAGGAAATGTGAAGGCCCTACAGCGGCAGGGAAAAGACAAGGCTTGATCAGTGGAATAGGATTTGGAATGTCTTCTTTCTTTCTATTTTGTGTGTATGCAACCAGCTTCTATGCGGGAGCTAAACTCGTCAAGGCTGGCAAAACAACATTTAGCGACGTTTTCCAAGTTTTCTTTGCTTTGACCATGGCAGCCACGGGCATATCTCAGTCGAGCAGCATGGGTCCTGATTCTAATAAAGCCAGGAGTGCTGCTGCTTCTATATTTGCAATTATAGACAGGAAGTCTAAGATAGACCCTAGTGACGAGTCTGGCATGAAATTGGATAATGTAAAGGGAGAGATTGAGCTTCACCATGTAAGCTTTAAATATCCATCCAGGCCAGATACACAGATTTTCCGAGACCTCAATTTAACCATTCACTGTGGCAAGACAGTTGCCCTGGTTGGAGAAAGTGGGAGTGGAAAGTCGACAGTTGTTGCATTGTTGCAACGATTTTATGATCCTGATTCAGGTCATATCACACTTGATGGAACTGAACTTGGAAAGTTCAACTTGAAATGGTTGAGGCAGCAGATGGGGCTTGTGGGGCAAGAACCTGTCTTATTTAACGACACAATCCGTGCCAACATTGCATATGGAAAGGATGGTGATGCAACTGAGGCAGAAATCATAGCTGCGTCGGAGTTGGCCAATGCACACAAATTTATTAGTAGCTTGAATCAGGGGTATGACACGGCAGTAGGAGAACGAGGAATACAATTATCTGGGGGGCAGAAGCAACGCGTAGCCATTGCACGTGCAATAATCAAGAGCCCCAAGATATTACTGTTGGACGAAGCTACAAGTGCACTTGATGCTGAATCTGAGAGAGTGGTTCAAGATGCATTAGACAGGGTGATGGTAAACCGAACAACAGTAGTGGTTGCTCATCGACTATCGACAATCAAGAATGCTGATGTGATCGCGGTGGTTAAAAACGGAGTGATCGTAGAAAAAGGAAAGCATGATAAGCTGATCAATATTACAGATGGATTTTATGCATCCTTGGTTGCTCTGCACATGAGCGCTTCAACTGCATGA

Protein Analysis

1297

Amino Acids

139.23

Weight (kDa)

7.04

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 69 - 342 1.1e-60 ABC transporter transmembrane region
ABC_tran PF00005 413 - 558 1.3e-31 ABC transporter
ABC_membrane PF00664 729 - 1000 5.2e-57 ABC transporter transmembrane region
ABC_tran PF00005 1070 - 1219 1.4e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AasI GACNNNNNNGTC 1 cut(s) 1965
Acc36I ACCTGC 1 cut(s) 2573
AccB1I GGYRCC 2 cut(s) 221, 1256
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccI GTMKAC 1 cut(s) 3278
AccII CGCG 2 cut(s) 3594, 3776
AcoI YGGCCR 2 cut(s) 375, 3498
AcsI RAATTY 6 cut(s) 572, 1376, 1529, 1647, 2002, 3512
AcuI CTGAAG 4 cut(s) 371, 1177, 1875, 2805
AcvI CACGTG 1 cut(s) 3608
AfaI GTAC 4 cut(s) 874, 1431, 2331, 2807
AfeI AGCGCT 1 cut(s) 3877
AfiI CCNNNNNNNGG 7 cut(s) 801, 1340, 1998, 2237, 2651, 2833, 3320
AflIII ACRYGT 1 cut(s) 3592
AhdI GACNNNNNGTC 1 cut(s) 3091
AjiI CACGTC 1 cut(s) 988
AjnI CCWGG 7 cut(s) 6, 1419, 2112, 2252, 3050, 3185, 3249
Alw21I GWGCWC 3 cut(s) 1678, 1769, 3661
Alw26I GTCTC 8 cut(s) 340, 397, 457, 1032, 1091, 1415, 2143, 3204
Alw44I GTGCAC 2 cut(s) 1674, 3657
AlwNI CAGNNNCTG 2 cut(s) 1508, 1691
Ama87I CYCGRG 1 cut(s) 2171
Aor51HI AGCGCT 1 cut(s) 3877
AoxI GGCC 7 cut(s) 3, 375, 2103, 2526, 2824, 3188, 3498
ApaI GGGCCC 1 cut(s) 2530
ApaLI GTGCAC 2 cut(s) 1674, 3657
ApoI RAATTY 6 cut(s) 572, 1376, 1529, 1647, 2002, 3512
Asp700I GAANNNNTTC 3 cut(s) 150, 2690, 2881
AspLEI GCGC 1 cut(s) 3878
AspS9I GGNCC 5 cut(s) 4, 2526, 2527, 2825, 3032
AsuC2I CCSGG 1 cut(s) 979
AsuNHI GCTAGC 1 cut(s) 2069
AvaI CYCGRG 1 cut(s) 2171
AvaII GGWCC 1 cut(s) 3032
AxyI CCTNAGG 1 cut(s) 1548
BaeGI GKGCMC 3 cut(s) 1678, 2530, 3661
BalI TGGCCA 1 cut(s) 3500
BamHI GGATCC 2 cut(s) 1019, 1849
BanI GGYRCC 2 cut(s) 221, 1256
BanII GRGCYC 2 cut(s) 2530, 3626
BauI CACGAG 1 cut(s) 2364
BbrPI CACGTG 1 cut(s) 3608
BbsI GAAGAC 3 cut(s) 377, 1232, 2874
Bbv12I GWGCWC 3 cut(s) 1678, 1769, 3661
BceAI ACGGC 1 cut(s) 3561
BcgI CGANNNNNNTGC 4 cut(s) 649, 683, 857, 891
BciT130I CCWGG 7 cut(s) 8, 1421, 2114, 2254, 3052, 3187, 3251
BclI TGATCA 3 cut(s) 276, 2856, 3825
BcnI CCSGG 1 cut(s) 979
BcoDI GTCTC 8 cut(s) 340, 397, 457, 1032, 1091, 1415, 2143, 3204
BfaI CTAG 5 cut(s) 908, 1251, 2070, 2546, 3108
BfmI CTRYAG 5 cut(s) 1077, 1263, 1617, 2010, 2829
BfoI RGCGCY 1 cut(s) 3879
BfuAI ACCTGC 1 cut(s) 2573
BglII AGATCT 1 cut(s) 1174
Bme1390I CCNGG 8 cut(s) 8, 979, 1421, 2114, 2254, 3052, 3187, 3251
Bme18I GGWCC 1 cut(s) 3032
BmeRI GACNNNNNGTC 1 cut(s) 3091
BmeT110I CYCGRG 1 cut(s) 2171
BmgBI CACGTC 1 cut(s) 988
BmgT120I GGNCC 5 cut(s) 4, 2526, 2527, 2825, 3032
BmiI GGNNCC 8 cut(s) 223, 775, 1021, 1258, 1425, 1851, 2528, 3033
BmrFI CCNGG 8 cut(s) 8, 979, 1421, 2114, 2254, 3052, 3187, 3251
BmrI ACTGGG 1 cut(s) 810
BmtI GCTAGC 1 cut(s) 2073
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 3 cut(s) 377, 1232, 2874
BplI GAGNNNNNCTC 2 cut(s) 2919, 2951
BpmI CTGGAG 2 cut(s) 522, 903
BpuEI CTTGAG 4 cut(s) 21, 1072, 1829, 2461
BpuMI CCSGG 1 cut(s) 979
Bsa29I ATCGAT 1 cut(s) 1536
BsaAI YACGTR 1 cut(s) 3608
BsaBI GATNNNNATC 1 cut(s) 1173
BsaI GGTCTC 5 cut(s) 340, 397, 1415, 2143, 3204
BsaXI ACNNNNNCTCC 2 cut(s) 3783, 3813
Bsc4I CCNNNNNNNGG 7 cut(s) 801, 1340, 1998, 2237, 2651, 2833, 3320
Bse118I RCCGGY 2 cut(s) 209, 2387
Bse1I ACTGG 3 cut(s) 505, 805, 1021
Bse21I CCTNAGG 1 cut(s) 1548
Bse3DI GCAATG 4 cut(s) 2565, 2592, 3438, 3600
Bse8I GATNNNNATC 1 cut(s) 1173
BseBI CCWGG 7 cut(s) 8, 1421, 2114, 2254, 3052, 3187, 3251
BseCI ATCGAT 1 cut(s) 1536
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 7 cut(s) 801, 1340, 1998, 2237, 2651, 2833, 3320
BseMI GCAATG 4 cut(s) 2565, 2592, 3438, 3600
BseNI ACTGG 3 cut(s) 505, 805, 1021
BseRI GAGGAG 1 cut(s) 2135
BseSI GKGCMC 3 cut(s) 1678, 2530, 3661
BseYI CCCAGC 2 cut(s) 1201, 2359
BsgI GTGCAG 3 cut(s) 705, 904, 3851
Bsh1236I CGCG 2 cut(s) 3594, 3776
Bsh1285I CGRYCG 1 cut(s) 2574
BshFI GGCC 7 cut(s) 5, 377, 2105, 2528, 2826, 3190, 3500
BshNI GGYRCC 2 cut(s) 221, 1256
BshVI ATCGAT 1 cut(s) 1536
BsiEI CGRYCG 1 cut(s) 2574
BsiHKAI GWGCWC 3 cut(s) 1678, 1769, 3661
BsiHKCI CYCGRG 1 cut(s) 2171
BsiSI CCGG 3 cut(s) 210, 978, 2388
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 7 cut(s) 801, 1340, 1998, 2237, 2651, 2833, 3320
BsmAI GTCTC 8 cut(s) 340, 397, 457, 1032, 1091, 1415, 2143, 3204
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 4 cut(s) 617, 1058, 1783, 3766
BsnI GGCC 7 cut(s) 5, 377, 2105, 2528, 2826, 3190, 3500
Bso31I GGTCTC 5 cut(s) 340, 397, 1415, 2143, 3204
BsoBI CYCGRG 1 cut(s) 2171
Bsp120I GGGCCC 1 cut(s) 2526
Bsp1286I GDGCHC 5 cut(s) 1678, 1769, 2530, 3626, 3661
Bsp1407I TGTACA 1 cut(s) 2805
Bsp19I CCATGG 3 cut(s) 552, 1563, 2994
BspANI GGCC 7 cut(s) 5, 377, 2105, 2528, 2826, 3190, 3500
BspDI ATCGAT 1 cut(s) 1536
BspFNI CGCG 2 cut(s) 3594, 3776
BspHI TCATGA 1 cut(s) 2682
BspLI GGNNCC 8 cut(s) 223, 775, 1021, 1258, 1425, 1851, 2528, 3033
BspMAI CTGCAG 2 cut(s) 1081, 1267
BspMI ACCTGC 1 cut(s) 2573
BspOI GCTAGC 1 cut(s) 2073
BspT107I GGYRCC 2 cut(s) 221, 1256
BspTNI GGTCTC 5 cut(s) 340, 397, 1415, 2143, 3204
BsrDI GCAATG 4 cut(s) 2565, 2592, 3438, 3600
BsrFI RCCGGY 2 cut(s) 209, 2387
BsrGI TGTACA 1 cut(s) 2805
BsrI ACTGG 3 cut(s) 505, 805, 1021
BssAI RCCGGY 2 cut(s) 209, 2387
BssSI CACGAG 1 cut(s) 2364
BssT1I CCWWGG 6 cut(s) 330, 552, 930, 1563, 2994, 3855
Bst2BI CACGAG 1 cut(s) 2364
Bst2UI CCWGG 7 cut(s) 8, 1421, 2114, 2254, 3052, 3187, 3251
Bst6I CTCTTC 2 cut(s) 1485, 2781
BstAPI GCANNNNNTGC 4 cut(s) 683, 1064, 1682, 3665
BstAUI TGTACA 1 cut(s) 2805
BstBAI YACGTR 1 cut(s) 3608
BstDSI CCRYGG 5 cut(s) 552, 721, 1563, 2994, 3003
BstENI CCTNNNNNAGG 1 cut(s) 3318
BstFNI CGCG 2 cut(s) 3594, 3776
BstH2I RGCGCY 1 cut(s) 3879
BstHHI GCGC 1 cut(s) 3878
BstMAI GTCTC 8 cut(s) 340, 397, 457, 1032, 1091, 1415, 2143, 3204
BstMCI CGRYCG 1 cut(s) 2574
BstNI CCWGG 7 cut(s) 8, 1421, 2114, 2254, 3052, 3187, 3251
BstNSI RCATGY 3 cut(s) 891, 2069, 2077
BstSCI CCNGG 8 cut(s) 6, 977, 1419, 2112, 2252, 3050, 3185, 3249
BstSFI CTRYAG 5 cut(s) 1077, 1263, 1617, 2010, 2829
BstSLI GKGCMC 3 cut(s) 1678, 2530, 3661
BstUI CGCG 2 cut(s) 3594, 3776
BstV2I GAAGAC 3 cut(s) 377, 1232, 2874
BstX2I RGATCY 6 cut(s) 290, 1019, 1174, 1639, 1849, 1988
BstXI CCANNNNNNTGG 3 cut(s) 14, 1030, 1450
BstYI RGATCY 6 cut(s) 290, 1019, 1174, 1639, 1849, 1988
Bsu15I ATCGAT 1 cut(s) 1536
Bsu36I CCTNAGG 1 cut(s) 1548
BsuRI GGCC 7 cut(s) 5, 377, 2105, 2528, 2826, 3190, 3500
BsuTUI ATCGAT 1 cut(s) 1536
BtgI CCRYGG 5 cut(s) 552, 721, 1563, 2994, 3003
BtrI CACGTC 1 cut(s) 988
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 6 cut(s) 531, 798, 1260, 2701, 2866, 3229
BveI ACCTGC 1 cut(s) 2573
CaiI CAGNNNCTG 2 cut(s) 1508, 1691
CciI TCATGA 1 cut(s) 2682
CfoI GCGC 1 cut(s) 3878
Cfr10I RCCGGY 2 cut(s) 209, 2387
Cfr13I GGNCC 5 cut(s) 4, 2526, 2527, 2825, 3032
ClaI ATCGAT 1 cut(s) 1536
CseI GACGC 2 cut(s) 2753, 3477
Csp6I GTAC 4 cut(s) 873, 1430, 2330, 2806
CspCI CAANNNNNGTGG 2 cut(s) 3711, 3746
CviQI GTAC 4 cut(s) 873, 1430, 2330, 2806
DraI TTTAAA 1 cut(s) 3175
DrdI GACNNNNNNGTC 1 cut(s) 1965
DriI GACNNNNNGTC 1 cut(s) 3091
DseDI GACNNNNNNGTC 1 cut(s) 1965
EaeI YGGCCR 2 cut(s) 375, 3498
Eam1104I CTCTTC 2 cut(s) 1485, 2781
Eam1105I GACNNNNNGTC 1 cut(s) 3091
EarI CTCTTC 2 cut(s) 1485, 2781
EciI GGCGGA 1 cut(s) 2138
Eco130I CCWWGG 6 cut(s) 330, 552, 930, 1563, 2994, 3855
Eco24I GRGCYC 2 cut(s) 2530, 3626
Eco31I GGTCTC 5 cut(s) 340, 397, 1415, 2143, 3204
Eco47I GGWCC 1 cut(s) 3032
Eco47III AGCGCT 1 cut(s) 3877
Eco57I CTGAAG 4 cut(s) 371, 1177, 1875, 2805
Eco72I CACGTG 1 cut(s) 3608
Eco81I CCTNAGG 1 cut(s) 1548
Eco88I CYCGRG 1 cut(s) 2171
EcoNI CCTNNNNNAGG 1 cut(s) 3318
EcoO109I RGGNCCY 3 cut(s) 2527, 2825, 3032
EcoRI GAATTC 1 cut(s) 2002
EcoRII CCWGG 7 cut(s) 6, 1419, 2112, 2252, 3050, 3185, 3249
EcoT14I CCWWGG 6 cut(s) 330, 552, 930, 1563, 2994, 3855
EcoT22I ATGCAT 3 cut(s) 2079, 3697, 3853
EcoT38I GRGCYC 2 cut(s) 2530, 3626
ErhI CCWWGG 6 cut(s) 330, 552, 930, 1563, 2994, 3855
FalI AAGNNNNNCTT 4 cut(s) 618, 650, 3347, 3379
FaqI GGGAC 1 cut(s) 379
FauI CCCGC 2 cut(s) 2517, 2917
FauNDI CATATG 1 cut(s) 3445
FbaI TGATCA 3 cut(s) 276, 2856, 3825
FblI GTMKAC 1 cut(s) 3278
FriOI GRGCYC 2 cut(s) 2530, 3626
FspBI CTAG 5 cut(s) 908, 1251, 2070, 2546, 3108
GlaI GCGC 1 cut(s) 3877
GsaI CCCAGC 2 cut(s) 1205, 2363
GsuI CTGGAG 2 cut(s) 522, 903
HaeII RGCGCY 1 cut(s) 3879
HaeIII GGCC 7 cut(s) 5, 377, 2105, 2528, 2826, 3190, 3500
HapII CCGG 3 cut(s) 210, 978, 2388
HgaI GACGC 2 cut(s) 2753, 3477
HhaI GCGC 1 cut(s) 3878
Hin6I GCGC 1 cut(s) 3876
HinP1I GCGC 1 cut(s) 3876
HincII GTYRAC 5 cut(s) 1299, 1732, 2288, 2659, 3279
HindII GTYRAC 5 cut(s) 1299, 1732, 2288, 2659, 3279
HindIII AAGCTT 1 cut(s) 3169
HpaII CCGG 3 cut(s) 210, 978, 2388
Hpy99I CGWCG 3 cut(s) 1232, 2969, 3493
HpyAV CCTTC 7 cut(s) 556, 805, 863, 1850, 2785, 2805, 2816
HpyCH4IV ACGT 5 cut(s) 471, 987, 2407, 2967, 3607
HpySE526I ACGT 5 cut(s) 471, 987, 2407, 2967, 3607
HspAI GCGC 1 cut(s) 3876
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Ksp22I TGATCA 3 cut(s) 276, 2856, 3825
LmnI GCTCC 5 cut(s) 779, 884, 1859, 2754, 2927
MaeI CTAG 5 cut(s) 908, 1251, 2070, 2546, 3108
MaeII ACGT 5 cut(s) 471, 987, 2407, 2967, 3607
MaeIII GTNAC 5 cut(s) 406, 983, 1196, 1980, 3110
MboII GAAGA 8 cut(s) 377, 1232, 1502, 1998, 2180, 2732, 2798, 2874
MfeI CAATTG 3 cut(s) 216, 750, 2577
MflI RGATCY 6 cut(s) 290, 1019, 1174, 1639, 1849, 1988
MhlI GDGCHC 5 cut(s) 1678, 1769, 2530, 3626, 3661
MlsI TGGCCA 1 cut(s) 3500
MluI ACGCGT 1 cut(s) 3592
MluNI TGGCCA 1 cut(s) 3500
MlyI GAGTC 2 cut(s) 2664, 3125
MmeI TCCRAC 7 cut(s) 547, 1255, 1979, 2515, 3235, 3471, 3621
Mox20I TGGCCA 1 cut(s) 3500
Mph1103I ATGCAT 3 cut(s) 2079, 3697, 3853
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 3 cut(s) 150, 2690, 2881
MscI TGGCCA 1 cut(s) 3500
MseI TTAA 8 cut(s) 1086, 1557, 2399, 2559, 3174, 3221, 3417, 3783
MslI CAYNNNNRTG 2 cut(s) 902, 1045
Msp20I TGGCCA 1 cut(s) 3500
MspA1I CMGCKG 7 cut(s) 129, 680, 1508, 2042, 2108, 2617, 2834
MspI CCGG 3 cut(s) 210, 978, 2388
MspR9I CCNGG 8 cut(s) 8, 979, 1421, 2114, 2254, 3052, 3187, 3251
MunI CAATTG 3 cut(s) 216, 750, 2577
Mva1269I GAATGC 4 cut(s) 617, 1058, 1783, 3766
MvaI CCWGG 7 cut(s) 8, 1421, 2114, 2254, 3052, 3187, 3251
MvnI CGCG 2 cut(s) 3594, 3776
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 979
NcoI CCATGG 3 cut(s) 552, 1563, 2994
NdeI CATATG 1 cut(s) 3445
NgoMIV GCCGGC 1 cut(s) 209
NheI GCTAGC 1 cut(s) 2069
NlaIV GGNNCC 8 cut(s) 223, 775, 1021, 1258, 1425, 1851, 2528, 3033
NmuCI GTSAC 2 cut(s) 983, 3110
NsiI ATGCAT 3 cut(s) 2079, 3697, 3853
NspI RCATGY 3 cut(s) 891, 2069, 2077
PaeI GCATGC 1 cut(s) 2077
PagI TCATGA 1 cut(s) 2682
PcsI WCGNNNNNNNCGW 1 cut(s) 3795
PctI GAATGC 4 cut(s) 617, 1058, 1783, 3766
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 3 cut(s) 150, 2690, 2881
PflMI CCANNNNNTGG 1 cut(s) 1340
PleI GAGTC 2 cut(s) 2663, 3124
PmaCI CACGTG 1 cut(s) 3608
PmlI CACGTG 1 cut(s) 3608
PpsI GAGTC 2 cut(s) 2663, 3124
Ppu21I YACGTR 1 cut(s) 3608
PpuMI RGGWCCY 1 cut(s) 3032
PsiI TTATAA 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 3032
Psp6I CCWGG 7 cut(s) 6, 1419, 2112, 2252, 3050, 3185, 3249
PspCI CACGTG 1 cut(s) 3608
PspFI CCCAGC 2 cut(s) 1201, 2359
PspGI CCWGG 7 cut(s) 6, 1419, 2112, 2252, 3050, 3185, 3249
PspN4I GGNNCC 8 cut(s) 223, 775, 1021, 1258, 1425, 1851, 2528, 3033
PspOMI GGGCCC 1 cut(s) 2526
PspPI GGNCC 5 cut(s) 4, 2526, 2527, 2825, 3032
PspPPI RGGWCCY 1 cut(s) 3032
PsrI GAACNNNNNNTAC 2 cut(s) 3549, 3581
PstI CTGCAG 2 cut(s) 1081, 1267
PstNI CAGNNNCTG 2 cut(s) 1508, 1691
PsuI RGATCY 6 cut(s) 290, 1019, 1174, 1639, 1849, 1988
PvuII CAGCTG 4 cut(s) 680, 1508, 2042, 2617
RsaI GTAC 4 cut(s) 874, 1431, 2331, 2807
RsaNI GTAC 4 cut(s) 873, 1430, 2330, 2806
RseI CAYNNNNRTG 2 cut(s) 902, 1045
SalI GTCGAC 1 cut(s) 3277
SaqAI TTAA 8 cut(s) 1086, 1557, 2399, 2559, 3174, 3221, 3417, 3783
Sau96I GGNCC 5 cut(s) 4, 2526, 2527, 2825, 3032
SchI GAGTC 2 cut(s) 2664, 3125
ScrFI CCNGG 8 cut(s) 8, 979, 1421, 2114, 2254, 3052, 3187, 3251
SduI GDGCHC 5 cut(s) 1678, 1769, 2530, 3626, 3661
SfcI CTRYAG 5 cut(s) 1077, 1263, 1617, 2010, 2829
SinI GGWCC 1 cut(s) 3032
SmiMI CAYNNNNRTG 2 cut(s) 902, 1045
SmlI CTYRAG 4 cut(s) 36, 1051, 1844, 2476
SmoI CTYRAG 4 cut(s) 36, 1051, 1844, 2476
SphI GCATGC 1 cut(s) 2077
SspI AATATT 3 cut(s) 1224, 1459, 3832
SspMI CTAG 5 cut(s) 908, 1251, 2070, 2546, 3108
StyD4I CCNGG 8 cut(s) 6, 977, 1419, 2112, 2252, 3050, 3185, 3249
StyI CCWWGG 6 cut(s) 330, 552, 930, 1563, 2994, 3855
TaiI ACGT 5 cut(s) 474, 990, 2410, 2970, 3610
TaqI TCGA 7 cut(s) 659, 1227, 1536, 3020, 3278, 3742, 3749
TatI WGTACW 1 cut(s) 2805
TauI GCSGC 4 cut(s) 380, 2028, 2108, 2837
Tru1I TTAA 8 cut(s) 1086, 1557, 2399, 2559, 3174, 3221, 3417, 3783
Tru9I TTAA 8 cut(s) 1086, 1557, 2399, 2559, 3174, 3221, 3417, 3783
TscAI CASTG 6 cut(s) 538, 805, 1267, 2701, 2866, 3236
TseFI GTSAC 2 cut(s) 983, 3110
Tsp45I GTSAC 2 cut(s) 983, 3110
TspGWI ACGGA 3 cut(s) 2676, 3419, 3804
TspRI CASTG 6 cut(s) 538, 805, 1267, 2701, 2866, 3236
Van91I CCANNNNNTGG 1 cut(s) 1340
VneI GTGCAC 2 cut(s) 1674, 3657
VpaK11BI GGWCC 1 cut(s) 3032
XagI CCTNNNNNAGG 1 cut(s) 3318
XapI RAATTY 6 cut(s) 572, 1376, 1529, 1647, 2002, 3512
XceI RCATGY 3 cut(s) 891, 2069, 2077
XcmI CCANNNNNNNNNTGG 1 cut(s) 1267
XmiI GTMKAC 1 cut(s) 3278
XmnI GAANNNNTTC 3 cut(s) 150, 2690, 2881
XspI CTAG 5 cut(s) 908, 1251, 2070, 2546, 3108
Zsp2I ATGCAT 3 cut(s) 2079, 3697, 3853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.