Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000116

Physical Location & Seq

Genomic Coordinates Forward (+)

51161129 .. 51161488

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGGGTTACGATACAGTAGTAGGAGAACGGGGGGTCCAACTGTCAGGTGGACAGAAGCAAAGGGTGGCAATTGCACGAGCTATTATGAAGGCGCCAAAGATATTACTCCTAGATGAGGCTACCAGTGCTCTTGATGCTGAATCCGAACGAGTCGTTCAAGATGCATTGGACAGAGTTATGGTGGATCGAACAACAGTGGTGGTTGCCCATCGGTTATCGACAATCAGAAGTGCAGATTTGATAGCAGTGGTAAAGAATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTGATCAATATCAAGGATGGCACTTATGCTTCTCTGGTAGCATTACATGCAAGTGCCTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

119

Amino Acids

12.68

Weight (kDa)

8.07

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	5 - 43	1e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca	FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica	MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica	Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis	pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis	RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata	RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora	Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa	Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha	Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana	Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	161
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	2 cut(s)	219, 305
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	38, 96
BmsI	GCATC	2 cut(s)	127, 154
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	302
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	187, 297
BspLI	GGNNCC	2 cut(s)	38, 96
BspPI	GGATC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	187, 297
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	19, 45, 199
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	357
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	190, 300
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	187, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 341
BstNSI	RCATGY	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	133, 204, 255
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	2 cut(s)	287, 341
CviJI	RGCY	2 cut(s)	83, 122
CviKI_1	RGCY	2 cut(s)	83, 122
DdeI	CTNAG	1 cut(s)	357
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	2 cut(s)	189, 299
DpnII	GATC	2 cut(s)	187, 297
Eco47I	GGWCC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	169
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
FaeI	CATG	2 cut(s)	290, 344
FaiI	YATR	5 cut(s)	89, 182, 288, 321, 342
FatI	CATG	2 cut(s)	286, 340
FbaI	TGATCA	1 cut(s)	297
FokI	GGATG	1 cut(s)	323
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	98
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	290, 344
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	143, 153, 264
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	148, 230
Hpy188III	TCNNGA	2 cut(s)	134, 161
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	19, 45, 199
HpyCH4V	TGCA	6 cut(s)	4, 77, 167, 236, 272, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 341
HpyF3I	CTNAG	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	290, 344
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	187, 297
LpnPI	CCDG	3 cut(s)	33, 139, 314
LweI	GCATC	2 cut(s)	127, 154
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	189, 299
MboI	GATC	2 cut(s)	187, 297
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	2 cut(s)	162, 273
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	169
MslI	CAYNNNNRTG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 341
NarI	GGCGCC	1 cut(s)	95
NdeII	GATC	2 cut(s)	187, 297
NlaIII	CATG	2 cut(s)	290, 344
NlaIV	GGNNCC	2 cut(s)	38, 96
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	161, 272
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	2 cut(s)	161, 272
PspN4I	GGNNCC	2 cut(s)	38, 96
PspPI	GGNCC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	187, 297
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	162, 273
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	2 cut(s)	52, 85
SfaNI	GCATC	2 cut(s)	127, 154
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	72
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	19, 45, 199
TaqI	TCGA	2 cut(s)	190, 221
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	3 cut(s)	133, 204, 255
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	133, 204, 255
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	116
XceI	RCATGY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.