MD13G1139100.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
10713103 .. 10718537
5435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1139100.v1.1.491

Sequence Viewer

Length: 3885 bp
ATGGCTGAGGTAAATCCTGTCGATGGAGAGGCAGTCAAGGAGCGGGACGTGGCAGCATCAAACGGCGATTCAACCGTGGAGGATTCCGAAAACAATGCGCAAGATACGAGCAAGAGCAAGGAGGATGGCACCAAAACAGTACCATATTACAAGCTTTTCTCCTTTGCTGATTCCTTGGATTACATGCTAATGTCTGTGGGTGTAATCAGCGCCATTGGAAATGGGCTCTGTCAGCCCCTAGTGACTGTAATCATAGGAGATATGATTAATTCTTTTGGAGGAACTGGGAATACCAAAGATGTGGTGGGTGCAGTTTCTAAGGTAGCTCTGAAGTATGTTTACTTGGCCGTGGGAGCTGGTGCTGCTGCATTTCTGCAGATGTCTTGCTGGATGATCACCGGAGAGAGACAGGCTGCACGAATAAGAGGCTTATATTTGAAAACAATATTAAGGCAAGATGTTGGTTTTTTCGATAACGAAACAAACACTGGGGAAATTATTGGGAGGATGTCAGGTGATACTGTGCTCATTCAAGAGGCCATGGGCGAGAAGGTAGGAAGTTTTATCCAATTAATTGCAACATTCATCGGAAGCTTTATTATCGCATTTGTTAAGGGGTGGCTTCTCACCCTTGTCATGCTATCGTCCATTCCCCTTCTTGTCTTCTCTGGGGCCATGATGGGCATCGTTATATCGAAGTTGGCATCCCGTGGGCAAACTGCTTATTCACTGGCATCAACTGTGGTAGATCAGACAGTTGGTTCAATCAGAACTGTTGTCTCATTTACAGGAGAGAAACATGCCATAGCTAATTACAACAGCTCCTTGATTAAAGCTTACAAGTCGGGTGTGCACGAGGGTTTGGCTTCTGGATTTGGGATTGGTTCTATGAGGCTTATTGTAATGTGTAGTTATGGTTTGGCTATATGGTTTGGCGGAAAGATGATAGTTGAAAAAGGATATACAGGAGGAGAAGTAATGAATGTAGTTTTCGCTGTGTTGAATGGCTCCCTGTCCCTTGGGCAGGCATCTCCATGCATGAGTGCATTTGCTGCTGGAAAAGCTGCAGCTTATAAAATGTTTGAGACGATTAACAGAAAGCCTGAGATAGATACTTATGACACTAATGGGGAGCAGTTACAAGAGATCCATGGAGAGATTGAACTGAGGGATGTTTATTTTAGTTATCCTGCAAGACCAGGTGAACAAATATTCCGTGGATTTTCTCTCTCAATACCTAGTGGTGCAACTGCTGCTTTGGTTGGAGGAAGCGGAAGTGGTAAATCCACTGTAATCAGTTTGATTGAGAGATTTTATGACCCCCAAGCTGGGGAAGTTCTTATCGATGGTCTTAATCTGAAAGAATTCCAGCTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGTCAGGAACCCGTTTTGTTTACTTGTAGCATTAAAGATAACATTGCTTATGGGAAGGAGCGTGCAACTAATGATGAAATAAGGGCTGCTGTTGAGCTTGCTAATGCAGCTAAATTCATAGACAAACTGCCTCAGGGACTAGACACAATGGTTGGTGAACATGGAGCTCAGCTATCTGGGGGACAAAAGCAGAGAGTTGCTATAGCTAGAGCAATCTTGAAAGACCCAAGAATTCTACTTTTAGACGAAGCCACAAGTGCTCTCGATGCAGAATCTGAGAGAGTTGTGCAGGAGGCATTGGATAGAATTATGATTGGTCGCACTACTGTTGTTGTAGCCCATCGTTTGAGCACAGTAAGGAATGCTGACACCATTGCAGTTATACATAGAGGGACAATTGTTGAAAAAGGACCACATTCTGAGCTAATTAAGGACTCTGAAGGAGCATATAGCCGGCTTATAAGGTTGCAAGAAATGAGAGCAGTGTCAGAAAAGACGAATGTGAATGATCACGATAGGCCAGAAATTAGTAGTGTGGATTCTCGGAGACATGCAAGTCCAAGATTTTCAAACTTACGATCCATAAGCTGGGGATCATCTGGAAGACGAAATAGTGGTCGTCATTCCCTCTCAATCTCATTTGGTGTGCCCACTGCAGTAGGTGTCCTTGAAGCAGCACCTCCAGGATCAAATATTCCTGACTCAAAATCATCAAGAGTGCCTCCAGAAGTCTCACTTCGCCGCCTAGCTTACCTGAACAAGCCAGAGATCCCAGTCTTGTTACTAGGAACTATAGCTGCAGCAGTCAATGGGGTATTCTCACCTTTTTTGGGGGTATTATTAGCCTGTATAACCAAAACCTTCTTTGAGCCACCGCATGAAGTCCGAAAGGATTCAAAGTTTTGGGCATTAATCTTTATTGTTCTTGGACTGGCTTCTTCCATAGCACATCCATTAAGACAATACCTTTTCGCTGTCGCGGGTTGTAGGTTAATAAAACGAGTCCGATCGATGTGCTTTGAGAAGGTGGTTTACATGGAAGTAAGTTGGTTTGACGATCCTGAGCACTCAAGTGGTGCAATTGGTGCAAGGCTTTCTGCAGATGCAGCTTCTTTGCGGGGGCTGGTTGGAGATGGGCTTGGTTTGCTTGTTCAGAACTTAGCAACTGCAGTTGCTGGTTTGGTGACTGCTTTTCTGGCAAATTGGCAACTTGCTCTTATAGTTCTTGTTTTGCTGCCTCTGTTAGGAGTAAATGGATATTTTCAAGTCAAATTCATGAAAGGATTCAGTGCGGATGCGAAGAAAATGTACGAGGAGGCAAGCCAAGTAGCGAATGATGCTGTAGGGAATATCAGAACAATTGCTTCCTTCTGTGCCGAAGAGAAGGTGATTGAATTGTACCAGAAAAAATGTGAAGGCCCAATTAAGAAAGGGATTAGACAAGGGTTAATCAGTGGGATAGGATTTGGGCTATCCTTCTTTTTTATGTATTCCGTGCATGCCACTAGTTTTTACGCAGGAGCCCGACTTGTTTCAGCTGGAAAGACAACATTCTCCGATGTTTTCCGGGTTTTCTTTGCTCTCACTATGGCAACTATTGGAGTGTCTCAGTCGGGTTCCCTAGCCCCTGATGTAAGTAAAGCAAAGAGCTCTGCTGCTTCTATATTTGCAATTCTCGATCGAAAATCAAAAATAGACTCCAGTGATGAATCTGGAACAACTATAGAAAATGTGAAGGGAGATATTGAATTACGCCATGTCAACTTTAAGTACCCAACTCGACCTGACGTGCTAATCTTCCAGGACCTTTGCTTGACCATTCGTCACGGCAAGACAGTTGCTCTGGTTGGAGAAAGTGGAAGTGGGAAATCGACAGTCATCTCATTGTTGCAGAGATTTTATGATCCTGATTCTGGTCACATTACACTAGATGGAATCGAAATACAAAAGCTACAGTTGAAGTGGTTGAGACAGCAAATGGGGCTGGTGAGCCAGGAGCCTGTGTTGTTTAATGAAACCATCCGAGCCAACATTGCATATGGAAAGGAAGGGGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAATTGGCAAACGCTCACAGGTTCATTAGTAGTTTACAACAGGGTTACGATACAATAGTAGGAGAGCGGGGGGTTCAACTGTCCGGTGGACAGAAGCAAAGGGTGGCAATTGCAAGAGCTATAATGAAGGCACCAAAGATTTTACTACTAGATGAAGCCACAAGTGCTCTTGACGCTGAATCCGAACGAGTTGTTCAAGACGCATTGGACCGAGTCATGGTGGATCGAACCGCGGTGGTGGTTGCTCATCGGTTATCCACGATTAGGAGTGCAGATTTAATCGCTGTGGTGAAAAATGGAGTCATTACAGAGAAAGGAAAGCATGAAACTTTGATCAATGTCAAGGATGGCATTTATGCTTCTTTGGTTGCATTCCATGCAAGTGCCTCATCTTAG

Protein Analysis

1295

Amino Acids

139.45

Weight (kDa)

8.22

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 66 - 338 8.2e-59 ABC transporter transmembrane region
ABC_tran PF00005 406 - 554 1.9e-32 ABC transporter
ABC_membrane PF00664 728 - 999 8.3e-62 ABC transporter transmembrane region
ABC_tran PF00005 1069 - 1218 3.7e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1074, 1865
AasI GACNNNNNNGTC 1 cut(s) 1959
Acc16I TGCGCA 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 128, 3619
AccB7I CCANNNNNTGG 1 cut(s) 1992
AccBSI CCGCTC 2 cut(s) 43, 3556
AccII CGCG 2 cut(s) 2384, 3722
AclWI GGATC 9 cut(s) 1141, 1388, 1977, 2005, 2098, 2167, 2456, 3302, 3720
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 4 cut(s) 1364, 1517, 1635, 2675
AcuI CTGAAG 2 cut(s) 350, 1863
AfaI GTAC 4 cut(s) 141, 2714, 2804, 3176
AhdI GACNNNNNGTC 1 cut(s) 3225
AhlI ACTAGT 1 cut(s) 2909
AjiI CACGTC 2 cut(s) 49, 3193
AjnI CCWGG 4 cut(s) 1198, 2086, 3204, 3396
AleI CACNNNNGTG 1 cut(s) 2475
AloI GAACNNNNNNTCC 2 cut(s) 1197, 1229
Alw21I GWGCWC 8 cut(s) 528, 855, 1573, 1666, 1757, 2472, 3056, 3658
Alw26I GTCTC 7 cut(s) 400, 784, 1079, 1945, 2140, 3015, 3367
Alw44I GTGCAC 1 cut(s) 851
AlwI GGATC 9 cut(s) 1141, 1388, 1977, 2005, 2098, 2167, 2456, 3302, 3720
AlwNI CAGNNNCTG 3 cut(s) 1679, 2579, 3470
AoxI GGCC 6 cut(s) 345, 537, 672, 1396, 1922, 2821
ApaLI GTGCAC 1 cut(s) 851
ApoI RAATTY 4 cut(s) 1364, 1517, 1635, 2675
ArsI GACNNNNNNTTYG 2 cut(s) 2005, 2037
AseI ATTAAT 3 cut(s) 267, 572, 2315
Asp700I GAANNNNTTC 3 cut(s) 1364, 2296, 2687
AspLEI GCGC 2 cut(s) 100, 212
AspS9I GGNCC 5 cut(s) 672, 1814, 2822, 3208, 3697
AsuC2I CCSGG 1 cut(s) 2972
AvaII GGWCC 3 cut(s) 1814, 3208, 3697
AxyI CCTNAGG 1 cut(s) 1536
BaeGI GKGCMC 2 cut(s) 855, 2055
BaeI ACNNNNGTAYC 2 cut(s) 3531, 3564
BanI GGYRCC 2 cut(s) 128, 3619
BanII GRGCYC 4 cut(s) 228, 1573, 2929, 3056
BarI GAAGNNNNNNTAC 6 cut(s) 323, 355, 2420, 2452, 2696, 2728
BauI CACGAG 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 655, 2014
Bbv12I GWGCWC 8 cut(s) 528, 855, 1573, 1666, 1757, 2472, 3056, 3658
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 9 cut(s) 17, 119, 673, 1340, 1752, 2531, 3329, 3431, 3830
BceAI ACGGC 3 cut(s) 79, 332, 3247
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 2400, 2434
BciT130I CCWGG 4 cut(s) 1200, 2088, 3206, 3398
BclI TGATCA 3 cut(s) 393, 1912, 3822
BcnI CCSGG 1 cut(s) 2972
BcoDI GTCTC 7 cut(s) 400, 784, 1079, 1945, 2140, 3015, 3367
BcuI ACTAGT 1 cut(s) 2909
BfoI RGCGCY 1 cut(s) 213
BlpI GCTNAGC 1 cut(s) 1572
Bme1390I CCNGG 5 cut(s) 1200, 2088, 2972, 3206, 3398
Bme18I GGWCC 3 cut(s) 1814, 3208, 3697
BmeRI GACNNNNNGTC 1 cut(s) 3225
BmgBI CACGTC 2 cut(s) 49, 3193
BmgT120I GGNCC 5 cut(s) 672, 1814, 2822, 3208, 3697
BmiI GGNNCC 8 cut(s) 130, 673, 1009, 1413, 2926, 3022, 3402, 3621
BmrFI CCNGG 5 cut(s) 1200, 2088, 2972, 3206, 3398
BmrI ACTGGG 3 cut(s) 294, 498, 2171
BmuI ACTGGG 3 cut(s) 294, 498, 2171
BpiI GAAGAC 2 cut(s) 655, 2014
BpmI CTGGAG 3 cut(s) 2070, 2112, 3088
Bpu10I CCTNAGC 2 cut(s) 6, 2466
Bpu1102I GCTNAGC 1 cut(s) 1572
BpuEI CTTGAG 1 cut(s) 2458
BpuMI CCSGG 1 cut(s) 2972
Bsa29I ATCGAT 2 cut(s) 1344, 2414
BsaBI GATNNNNATC 1 cut(s) 683
BsaJI CCNNGG 9 cut(s) 75, 174, 348, 540, 709, 1018, 1150, 1216, 3720
BsaWI WCCGGW 2 cut(s) 398, 3572
BsaXI ACNNNNNCTCC 8 cut(s) 18, 48, 806, 836, 960, 990, 3392, 3422
Bse118I RCCGGY 1 cut(s) 1857
Bse1I ACTGG 6 cut(s) 289, 493, 735, 2177, 2340, 3105
Bse21I CCTNAGG 1 cut(s) 1536
Bse3DI GCAATG 3 cut(s) 1446, 1776, 3435
Bse8I GATNNNNATC 1 cut(s) 683
BseBI CCWGG 4 cut(s) 1200, 2088, 3206, 3398
BseCI ATCGAT 2 cut(s) 1344, 2414
BseDI CCNNGG 9 cut(s) 75, 174, 348, 540, 709, 1018, 1150, 1216, 3720
BseJI GATNNNNATC 1 cut(s) 683
BseMI GCAATG 3 cut(s) 1446, 1776, 3435
BseMII CTCAG 8 cut(s) 1095, 1157, 1550, 1586, 1671, 1815, 2457, 3026
BseNI ACTGG 6 cut(s) 289, 493, 735, 2177, 2340, 3105
BseRI GAGGAG 2 cut(s) 984, 2732
BseSI GKGCMC 2 cut(s) 855, 2055
BseYI CCCAGC 2 cut(s) 1328, 1992
BsgI GTGCAG 4 cut(s) 330, 399, 1712, 3780
Bsh1236I CGCG 2 cut(s) 2384, 3722
Bsh1285I CGRYCG 2 cut(s) 2414, 3085
BshFI GGCC 6 cut(s) 347, 539, 674, 1398, 1924, 2823
BshNI GGYRCC 2 cut(s) 128, 3619
BshVI ATCGAT 2 cut(s) 1344, 2414
BsiEI CGRYCG 2 cut(s) 2414, 3085
BsiHKAI GWGCWC 8 cut(s) 528, 855, 1573, 1666, 1757, 2472, 3056, 3658
BsiSI CCGG 4 cut(s) 399, 1858, 2971, 3573
BslFI GGGAC 5 cut(s) 59, 1000, 1554, 1599, 1810
BsmAI GTCTC 7 cut(s) 400, 784, 1079, 1945, 2140, 3015, 3367
BsmBI CGTCTC 1 cut(s) 1079
BsmFI GGGAC 5 cut(s) 59, 1000, 1554, 1599, 1810
BsmI GAATGC 2 cut(s) 1771, 3860
BsnI GGCC 6 cut(s) 347, 539, 674, 1398, 1924, 2823
Bsp1720I GCTNAGC 1 cut(s) 1572
Bsp19I CCATGG 2 cut(s) 540, 1150
BspANI GGCC 6 cut(s) 347, 539, 674, 1398, 1924, 2823
BspCNI CTCAG 8 cut(s) 1096, 1158, 1549, 1585, 1672, 1816, 2458, 3025
BspDI ATCGAT 2 cut(s) 1344, 2414
BspFNI CGCG 2 cut(s) 2384, 3722
BspHI TCATGA 1 cut(s) 2679
BspLI GGNNCC 8 cut(s) 130, 673, 1009, 1413, 2926, 3022, 3402, 3621
BspMAI CTGCAG 7 cut(s) 378, 1069, 2062, 2206, 2506, 2575, 3487
BspPI GGATC 9 cut(s) 1141, 1388, 1977, 2005, 2098, 2167, 2456, 3302, 3720
BspT107I GGYRCC 2 cut(s) 128, 3619
BsrBI CCGCTC 2 cut(s) 43, 3556
BsrDI GCAATG 3 cut(s) 1446, 1776, 3435
BsrFI RCCGGY 1 cut(s) 1857
BsrI ACTGG 6 cut(s) 289, 493, 735, 2177, 2340, 3105
BssAI RCCGGY 1 cut(s) 1857
BssECI CCNNGG 9 cut(s) 75, 174, 348, 540, 709, 1018, 1150, 1216, 3720
BssSI CACGAG 1 cut(s) 854
BssT1I CCWWGG 4 cut(s) 174, 540, 1018, 1150
Bst2BI CACGAG 1 cut(s) 854
Bst2UI CCWGG 4 cut(s) 1200, 2088, 3206, 3398
Bst6I CTCTTC 1 cut(s) 2778
BstAPI GCANNNNNTGC 4 cut(s) 1052, 1253, 2489, 3866
BstC8I GCNNGC 6 cut(s) 1026, 1467, 1503, 1859, 2725, 2904
BstDSI CCRYGG 7 cut(s) 75, 348, 540, 709, 1150, 1216, 3720
BstENI CCTNNNNNAGG 2 cut(s) 1022, 2646
BstFNI CGCG 2 cut(s) 2384, 3722
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 2 cut(s) 100, 212
BstMAI GTCTC 7 cut(s) 400, 784, 1079, 1945, 2140, 3015, 3367
BstMCI CGRYCG 2 cut(s) 2414, 3085
BstNI CCWGG 4 cut(s) 1200, 2088, 3206, 3398
BstNSI RCATGY 4 cut(s) 187, 803, 1958, 2906
BstSCI CCNGG 5 cut(s) 1198, 2086, 2970, 3204, 3396
BstSLI GKGCMC 2 cut(s) 855, 2055
BstUI CGCG 2 cut(s) 2384, 3722
BstV2I GAAGAC 2 cut(s) 655, 2014
BstX2I RGATCY 2 cut(s) 1146, 2172
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 2 cut(s) 1146, 2172
Bsu15I ATCGAT 2 cut(s) 1344, 2414
Bsu36I CCTNAGG 1 cut(s) 1536
BsuRI GGCC 6 cut(s) 347, 539, 674, 1398, 1924, 2823
BsuTUI ATCGAT 2 cut(s) 1344, 2414
BtgI CCRYGG 7 cut(s) 75, 348, 540, 709, 1150, 1216, 3720
BtrI CACGTC 2 cut(s) 49, 3193
BtsI GCAGTG 2 cut(s) 1893, 2055
BtsIMutI CAGTG 8 cut(s) 486, 728, 1287, 1893, 2055, 2698, 2863, 3112
Cac8I GCNNGC 6 cut(s) 1026, 1467, 1503, 1859, 2725, 2904
CaiI CAGNNNCTG 3 cut(s) 1679, 2579, 3470
CciI TCATGA 1 cut(s) 2679
CfoI GCGC 2 cut(s) 100, 212
Cfr10I RCCGGY 1 cut(s) 1857
Cfr13I GGNCC 5 cut(s) 672, 1814, 2822, 3208, 3697
Cfr42I CCGCGG 1 cut(s) 3723
ClaI ATCGAT 2 cut(s) 1344, 2414
CseI GACGC 2 cut(s) 3671, 3698
CsiI ACCWGGT 1 cut(s) 1198
Csp6I GTAC 4 cut(s) 140, 2713, 2803, 3175
CviQI GTAC 4 cut(s) 140, 2713, 2803, 3175
DrdI GACNNNNNNGTC 1 cut(s) 1959
DriI GACNNNNNGTC 1 cut(s) 3225
DseDI GACNNNNNNGTC 1 cut(s) 1959
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 2778
Eam1105I GACNNNNNGTC 1 cut(s) 3225
EarI CTCTTC 1 cut(s) 2778
EciI GGCGGA 1 cut(s) 951
Ecl136II GAGCTC 2 cut(s) 1571, 3054
Eco130I CCWWGG 4 cut(s) 174, 540, 1018, 1150
Eco147I AGGCCT 1 cut(s) 1398
Eco24I GRGCYC 4 cut(s) 228, 1573, 2929, 3056
Eco47I GGWCC 3 cut(s) 1814, 3208, 3697
Eco53kI GAGCTC 2 cut(s) 1571, 3054
Eco57I CTGAAG 2 cut(s) 350, 1863
Eco81I CCTNAGG 1 cut(s) 1536
EcoICRI GAGCTC 2 cut(s) 1571, 3054
EcoNI CCTNNNNNAGG 2 cut(s) 1022, 2646
EcoO109I RGGNCCY 1 cut(s) 3208
EcoRI GAATTC 2 cut(s) 1364, 1635
EcoRII CCWGG 4 cut(s) 1198, 2086, 3204, 3396
EcoT14I CCWWGG 4 cut(s) 174, 540, 1018, 1150
EcoT22I ATGCAT 1 cut(s) 1040
EcoT38I GRGCYC 4 cut(s) 228, 1573, 2929, 3056
ErhI CCWWGG 4 cut(s) 174, 540, 1018, 1150
Esp3I CGTCTC 1 cut(s) 1079
FalI AAGNNNNNCTT 2 cut(s) 2124, 2156
FaqI GGGAC 5 cut(s) 59, 1000, 1554, 1599, 1810
FauI CCCGC 4 cut(s) 36, 2377, 2514, 3549
FauNDI CATATG 1 cut(s) 3442
FbaI TGATCA 3 cut(s) 393, 1912, 3822
FriOI GRGCYC 4 cut(s) 228, 1573, 2929, 3056
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 2 cut(s) 99, 211
GsaI CCCAGC 2 cut(s) 1332, 1996
GsuI CTGGAG 3 cut(s) 2070, 2112, 3088
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 6 cut(s) 347, 539, 674, 1398, 1924, 2823
HapII CCGG 4 cut(s) 399, 1858, 2971, 3573
HgaI GACGC 2 cut(s) 3671, 3698
HhaI GCGC 2 cut(s) 100, 212
Hin6I GCGC 2 cut(s) 98, 210
HinP1I GCGC 2 cut(s) 98, 210
HincII GTYRAC 1 cut(s) 3166
HindII GTYRAC 1 cut(s) 3166
HindIII AAGCTT 3 cut(s) 152, 592, 834
HpaII CCGG 4 cut(s) 399, 1858, 2971, 3573
Hpy166II GTNNAC 9 cut(s) 340, 853, 1205, 1425, 1562, 2437, 3166, 3524, 3578
Hpy8I GTNNAC 9 cut(s) 340, 853, 1205, 1425, 1562, 2437, 3166, 3524, 3578
HpyCH4IV ACGT 2 cut(s) 48, 3192
HpySE526I ACGT 2 cut(s) 48, 3192
HspAI GCGC 2 cut(s) 98, 210
KroI GCCGGC 1 cut(s) 1857
KroNI GCCGGC 1 cut(s) 1859
Ksp22I TGATCA 3 cut(s) 393, 1912, 3822
KspI CCGCGG 1 cut(s) 3723
MabI ACCWGGT 1 cut(s) 1198
MaeII ACGT 2 cut(s) 48, 3192
MaeIII GTNAC 7 cut(s) 241, 1137, 2184, 2587, 3227, 3320, 3533
MbiI CCGCTC 2 cut(s) 43, 3556
MboII GAAGA 6 cut(s) 655, 2019, 2334, 2716, 2795, 3193
MfeI CAATTG 4 cut(s) 1800, 2484, 2763, 3597
MflI RGATCY 2 cut(s) 1146, 2172
MlyI GAGTC 6 cut(s) 1832, 2099, 2415, 3095, 3711, 3798
MmeI TCCRAC 3 cut(s) 1243, 2512, 3232
Mph1103I ATGCAT 1 cut(s) 1040
MroNI GCCGGC 1 cut(s) 1857
MroXI GAANNNNTTC 3 cut(s) 1364, 2296, 2687
MslI CAYNNNNRTG 4 cut(s) 188, 1033, 2475, 3870
MspA1I CMGCKG 3 cut(s) 1372, 2942, 3722
MspI CCGG 4 cut(s) 399, 1858, 2971, 3573
MspR9I CCNGG 5 cut(s) 1200, 2088, 2972, 3206, 3398
MunI CAATTG 4 cut(s) 1800, 2484, 2763, 3597
Mva1269I GAATGC 2 cut(s) 1771, 3860
MvaI CCWGG 4 cut(s) 1200, 2088, 3206, 3398
MvnI CGCG 2 cut(s) 2384, 3722
NaeI GCCGGC 1 cut(s) 1859
NciI CCSGG 1 cut(s) 2972
NcoI CCATGG 2 cut(s) 540, 1150
NdeI CATATG 1 cut(s) 3442
NgoMIV GCCGGC 1 cut(s) 1857
NlaIV GGNNCC 8 cut(s) 130, 673, 1009, 1413, 2926, 3022, 3402, 3621
NmuCI GTSAC 4 cut(s) 241, 2587, 3227, 3320
NsbI TGCGCA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 1040
NspI RCATGY 4 cut(s) 187, 803, 1958, 2906
OliI CACNNNNGTG 1 cut(s) 2475
PaeI GCATGC 1 cut(s) 2906
PagI TCATGA 1 cut(s) 2679
PceI AGGCCT 1 cut(s) 1398
PcsI WCGNNNNNNNCGW 1 cut(s) 3669
PctI GAATGC 2 cut(s) 1771, 3860
PdiI GCCGGC 1 cut(s) 1859
PdmI GAANNNNTTC 3 cut(s) 1364, 2296, 2687
PflFI GACNNNGTC 1 cut(s) 3701
PflMI CCANNNNNTGG 1 cut(s) 1992
PfoI TCCNGGA 2 cut(s) 2086, 3204
Ple19I CGATCG 2 cut(s) 2414, 3085
PleI GAGTC 6 cut(s) 1832, 2099, 2414, 3095, 3710, 3797
PpsI GAGTC 6 cut(s) 1832, 2099, 2414, 3095, 3710, 3797
PpuMI RGGWCCY 1 cut(s) 3208
PshBI ATTAAT 3 cut(s) 267, 572, 2315
PsiI TTATAA 2 cut(s) 1074, 1865
Psp124BI GAGCTC 2 cut(s) 1573, 3056
Psp5II RGGWCCY 1 cut(s) 3208
Psp6I CCWGG 4 cut(s) 1198, 2086, 3204, 3396
PspFI CCCAGC 2 cut(s) 1328, 1992
PspGI CCWGG 4 cut(s) 1198, 2086, 3204, 3396
PspN4I GGNNCC 8 cut(s) 130, 673, 1009, 1413, 2926, 3022, 3402, 3621
PspPI GGNCC 5 cut(s) 672, 1814, 2822, 3208, 3697
PspPPI RGGWCCY 1 cut(s) 3208
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PstI CTGCAG 7 cut(s) 378, 1069, 2062, 2206, 2506, 2575, 3487
PstNI CAGNNNCTG 3 cut(s) 1679, 2579, 3470
PsuI RGATCY 2 cut(s) 1146, 2172
PsyI GACNNNGTC 1 cut(s) 3701
PvuI CGATCG 2 cut(s) 2414, 3085
PvuII CAGCTG 2 cut(s) 1372, 2942
RsaI GTAC 4 cut(s) 141, 2714, 2804, 3176
RsaNI GTAC 4 cut(s) 140, 2713, 2803, 3175
RseI CAYNNNNRTG 4 cut(s) 188, 1033, 2475, 3870
SacI GAGCTC 2 cut(s) 1573, 3056
SacII CCGCGG 1 cut(s) 3723
Sau96I GGNCC 5 cut(s) 672, 1814, 2822, 3208, 3697
SchI GAGTC 6 cut(s) 1832, 2099, 2415, 3095, 3711, 3798
ScrFI CCNGG 5 cut(s) 1200, 2088, 2972, 3206, 3398
SexAI ACCWGGT 1 cut(s) 1198
Sfr303I CCGCGG 1 cut(s) 3723
SgrBI CCGCGG 1 cut(s) 3723
SinI GGWCC 3 cut(s) 1814, 3208, 3697
SmiMI CAYNNNNRTG 4 cut(s) 188, 1033, 2475, 3870
SmlI CTYRAG 1 cut(s) 2473
SmoI CTYRAG 1 cut(s) 2473
SpeI ACTAGT 1 cut(s) 2909
SphI GCATGC 1 cut(s) 2906
SseBI AGGCCT 1 cut(s) 1398
SspI AATATT 3 cut(s) 447, 1212, 2098
SstI GAGCTC 2 cut(s) 1573, 3056
StuI AGGCCT 1 cut(s) 1398
StyD4I CCNGG 5 cut(s) 1198, 2086, 2970, 3204, 3396
StyI CCWWGG 4 cut(s) 174, 540, 1018, 1150
TaiI ACGT 2 cut(s) 51, 3195
TaqII GACCGA 1 cut(s) 3714
TauI GCSGC 1 cut(s) 2148
TscAI CASTG 8 cut(s) 493, 735, 1294, 1893, 2062, 2698, 2863, 3112
TseFI GTSAC 4 cut(s) 241, 2587, 3227, 3320
Tsp45I GTSAC 4 cut(s) 241, 2587, 3227, 3320
TspGWI ACGGA 2 cut(s) 1205, 2887
TspRI CASTG 8 cut(s) 493, 735, 1294, 1893, 2062, 2698, 2863, 3112
Tth111I GACNNNGTC 1 cut(s) 3701
Van91I CCANNNNNTGG 1 cut(s) 1992
VneI GTGCAC 1 cut(s) 851
VpaK11BI GGWCC 3 cut(s) 1814, 3208, 3697
VspI ATTAAT 3 cut(s) 267, 572, 2315
XagI CCTNNNNNAGG 2 cut(s) 1022, 2646
XapI RAATTY 4 cut(s) 1364, 1517, 1635, 2675
XceI RCATGY 4 cut(s) 187, 803, 1958, 2906
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmnI GAANNNNTTC 3 cut(s) 1364, 2296, 2687
Zsp2I ATGCAT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.