RH3BG307000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000116
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG307000.1

Sequence Viewer

Length: 3888 bp
ATGGCTGAGGAGAATGGTGTGAATGGTGATACCAAAAATCATGAAAACCATGCAGAAGAAGAGAAAAGCTCAGCCCCCATGAATAGGGATCAGCCAGGCTCATCAGCTAGCAATGGAGATGAGAAAGTTGAAAAGATTCCTTTCTCCAAGCTATTCTCCTTTGCAGATAAGACTGATGTTATCTTGATGGTTGTCGGCACGATTGGTGCCATTGGGAATGGTTCTTGTATGCCCCTCATGACGCTATTGTTTGGGGAGATGATAGATTCTTTTGGATCTAATCAAAATTCAGACATAGTCTCAGTTGTTTCAAAGGTCTCTCTGAAATTTGTTTACCTGGCTGTGGGAGCAGCTGTGGCAGCATTTCTCCAGGTGTCTTGCTGGATGGTCACAGGGGAAAGACAAGCTGCAAGAATTAGAGGTTTGTATTTGAAAACAATATTGAGACAAGATGTTGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTAGTTGGGAGAATGTCTGGTGACACTGTTCTCATTCAAGATGCCATGGGGGAGAAGGTTGGAAAATTCTTACAGCTGCTTTCAACATTCATTGGAGGGTTTATAATAGCATTCATCAAGGGGTGGCTTCTCACTCTTGTCATGCTATCCTCTATTCCTTTGCTTGTGGCATCTGGTGCAACGATGTCCATCATTATAACCAAGATGGCATCCCGTGGACAAACTGCTTACGCAAAAGCAGCAAATGTAGTTGAACAAACAATTGGGTCCATTAGAACCGTTGCATCATTTACTGGCGAGAGGGAAGCTATAACTAGTTATAACAAATATCTCGTAGATGCTTACAAATCAGGTGTTCATGAAGGTTCAGCTGCTGGAATAGGTCTTGGCTTGGTTATGTGTGTTGTGTTCAGCACATATGCCTTGGCTGTATGGTTTGGTTCAAAGATGATAAGGGAAAATGGATATACTGGGGGTGAAGTACTGAATGTGATTGTTGCTGTGTTGACTGGATCTATGTCTTTAGGGCAGACATCACCATGCATGAGTGCATTTGCTGCTGGTCAAGCTGCAGCTTATAAGATGTTTCAGACTATTAGTAGAAAGCCAGAGATAGATGCTTATGATGAAAAGGGAAAGACTTTGGGTGACATTTCGGGAGACATAGAGTTGAGAGATGTTTATTTCAGCTATCCAGCCAGACCGGATGAGCAAATATTTGACGGGTTCTCTCTTTGTATCCCTAGTGGCACAACTGCTGCTTTGGTTGGACAAAGTGGAAGTGGCAAGTCAACAGTCATCAGTCTGATAGAGAGATTTTATGATCCGCAAGCTGGTGAAGTTTTAATAGATGGCATAAACCTAAAAGAATTTCAACTTAAATGGATTCGGAGTAAAATTGGTCTTGTCAGTCAGGAACCTGTCCTGTTTGCATCCAGCATTAAGGAAAATATTGCCTATGGAAAGGATGGTGCTACCACTGAAGAGATACAAGCAGCAGCTGAGCTTGCAAATGCGGCTAAATTTGTTGATAAATTGCCTCAGGGCCTTGACAGCTTGGTCGGTGAGCATGGAACTCAGCTGTCTGGTGGGCAGAAGCAGAGAATTGCTATTGCAAGAGCAATTTTGAAAGACCCAAGGATTTTACTTCTGGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAGAGGGTAGTTCAAGAAGCATTGGATAGGATTATGGTTAACCGAACTACTGTTGTTGTCGCTCATCGTTTGAGTACAGTGAGGAATGCAGACATGATTGCTGTCATTCATAAAGGAAAGATGGTTGAAAAAGGTTCGCACTTGAATTTACTCAAAGATCCTGAGGGAGCTTACTCTCAGCTTATACGCTTGCAAGAAGTAAACAAAGAGTCAGAACAAACGTCAGAAGACCAAAACAAACCTGAAATAACTCTGGCATCTCTTAGACAGTCGAGTCAAAGAACATCGAGTCAAAGACTTTCGTTTGCACGATCCTTAAGTAGAAATTCTTCTGTAGGAAATAGCAGCCGTCACTCATATTCAGTGGCATTTGGTTTACCCACTGGACTTGGAGGCATTGGTGTCCAAGATGTTGCATATGAAGAAACAGAGCTATCACCAGAGAAACCTCCAAATGTCTCACTCCGCCGCATTGCTGCCCTGAACAAACCTGAGATTCCAGTTCTTATTATTGGAACTATAGCTGCAATCATCAATGGTGTTATACTTCCAATATTCGGTGTGCTCATTTCCAGGGTTATAAAGACTTTCTATGAACCACCTCATCAACAGAAGAAAGATGCAGCATTTTGGGCAATAATTTTTATGATCCTTGGTCTGATATCATTCGTGGTGATCCCAGCACGAGGATATTTCTTTTCAGTAGCTGGCAGCAAGTTAATTCAGCGTATCAGATTATTGTGTTTTGAGAGAGTGGTTCACATGGAGGTTGGGTGGTTTGATGAGCCTGAGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCAGCGTCGGTGAGGGCCCTAGTCGGAGACGCTCTAGCTCAGATGGTTCAAAACATGGCAGCTGCAGTTGCAGGTTTGGTCATTGCTTATATTGCATGTTGGCAGCTGGCATTTATTGTCCTCGCATTGCTTCCTCTCATCGCAGTTAATGGATATGTACAAATAAAGTTCATGAAAGGATTCAGCGCAGATGCAAAGATGATGTATGAGGAGGCAAGCCAAGTTGCTAATGACGCAGTTGGAAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTATACAGAAGGAAATGTGAAGGCCCTATGAAGACAGGGATAAGACAAGGCTTGATCAGTGGTATAGGATTTGGGGTATCTTTCTTCTTTTTGTTTTGTGTCTACGCAACCAGTTTCTATGCGGGAGCTCAACTCGTGAAGGCTGGCAAAACAACATTTACAGACGTTTTCCAAGTTTTCTTTGCTCTGACCATGGCAGCTACCGGAATTTCTCAATCAAGCTCCTTTGGTCCCGATTCTGGTAAAGCCAAAACTTCTGCTGCTTCCATATTTGCAATAATAGACCGGCCATCAAAGATAGACCCAAGTAACGAGTCTGGCACGAAAATTGATGGTGGTGTGAAAGGAGAGATTGAGCTTCGCCATGTAAGCTTTAAGTATCCATCTAGGCCAGAAACACCTATTTTCCGAGACCTCAATTTAACTATCCGCTCTGGCAAGACGGTTGCCCTGGTTGGAGAAAGTGGGAGCGGAAAATCAACTGTTGTTGCATTGTTGCAAAGATTTTATGATCCGGATTCAGGTCATATCACACTTGATGGAATTGAACTTGGCAACTACAACTTGAAATGGTTGAGGCAGCAGATGGGACTCGTAAGCCAAGAACCTGTTTTATTTAATGACACCATTCGCGCCAACATTGCGTATGGAAAGGAAGAAACTGCAACTGAGGCAGAAATTATAGCTGCATCAGAGTTGGCCAATGCCCACAAGTTCATCAGTAGCCTACACCAGGGCTATGATACCGTAGTAGGAGAACGAGGAATCCAATTATCCGGGGGGCAGAAGCAACGTGTAGCCATTGCGCGTGCTATAATCAAGAGCCCCAAGATATTACTGTTGGATGAAGCTACGAGTGCACTTGATGCCGAATCTGAGAGAGTGGTTCAAGATGCATTAGACCGAGTCATGGTGAACCGGACAACAGTGGTGGTGGCTCATAGACTATCCACAATCAAGAATGCTGATGTGATTGCAGTGGTTAAAAATGGAGTTATAGTAGAGAAAGGGAAGCATGACAATTTGATTAATATCACCGATGGGTTTTATGCATCCCTAATTGCTCTTCACATGAGCTCTTCAACTGCATGA

Protein Analysis

1295

Amino Acids

139.56

Weight (kDa)

6.45

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 64 - 336 1.2e-58 ABC transporter transmembrane region
ABC_tran PF00005 404 - 552 3.1e-33 ABC transporter
ABC_membrane PF00664 727 - 998 5.2e-59 ABC transporter transmembrane region
ABC_tran PF00005 1069 - 1218 5.2e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 593, 686, 810, 1068, 2255
AasI GACNNNNNNGTC 2 cut(s) 1547, 1947
Acc36I ACCTGC 1 cut(s) 2567
AccB1I GGYRCC 1 cut(s) 206
AccBSI CCGCTC 2 cut(s) 3228, 3267
AccI GTMKAC 1 cut(s) 2898
AccII CGCG 2 cut(s) 3429, 3604
AccIII TCCGGA 1 cut(s) 3310
AciI CCGC 7 cut(s) 1316, 1505, 2140, 2143, 2918, 3226, 3267
AclWI GGATC 9 cut(s) 96, 283, 1009, 1307, 1826, 1980, 2317, 2344, 3302
AcoI YGGCCR 2 cut(s) 3083, 3495
AcsI RAATTY 8 cut(s) 286, 326, 554, 1358, 1511, 1819, 1999, 3003
AcuI CTGAAG 2 cut(s) 1491, 2799
AfaI GTAC 3 cut(s) 972, 1750, 2664
AfiI CCNNNNNNNGG 9 cut(s) 84, 343, 1322, 2231, 2360, 3035, 3317, 3529, 3706
AflII CTTAAG 1 cut(s) 1990
AflIII ACRYGT 1 cut(s) 3589
AhlI ACTAGT 1 cut(s) 803
AjnI CCWGG 6 cut(s) 94, 336, 369, 2246, 3246, 3528
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AloI GAACNNNNNNTCC 2 cut(s) 3546, 3578
Alw21I GWGCWC 5 cut(s) 1660, 2241, 2926, 3658, 3875
Alw26I GTCTC 7 cut(s) 304, 322, 439, 1143, 2137, 2526, 3201
Alw44I GTGCAC 2 cut(s) 1656, 3654
AlwI GGATC 9 cut(s) 96, 283, 1009, 1307, 1826, 1980, 2317, 2344, 3302
AlwNI CAGNNNCTG 4 cut(s) 863, 1490, 1673, 2381
Aor13HI TCCGGA 1 cut(s) 3310
AoxI GGCC 6 cut(s) 1534, 2520, 2818, 3083, 3185, 3495
ApaI GGGCCC 1 cut(s) 2524
ApaLI GTGCAC 2 cut(s) 1656, 3654
ApoI RAATTY 8 cut(s) 286, 326, 554, 1358, 1511, 1819, 1999, 3003
AseI ATTAAT 1 cut(s) 3825
Asp700I GAANNNNTTC 3 cut(s) 135, 2002, 2684
AspLEI GCGC 3 cut(s) 2693, 3431, 3604
AspS9I GGNCC 6 cut(s) 756, 1534, 2520, 2521, 2819, 3026
AsuC2I CCSGG 1 cut(s) 3574
AsuNHI GCTAGC 1 cut(s) 107
AvaII GGWCC 2 cut(s) 756, 3026
AxyI CCTNAGG 2 cut(s) 1530, 1836
BaeGI GKGCMC 3 cut(s) 1660, 2524, 3658
BaeI ACNNNNGTAYC 2 cut(s) 3531, 3564
BalI TGGCCA 1 cut(s) 3497
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 4 cut(s) 2524, 2926, 3623, 3875
BarI GAAGNNNNNNTAC 2 cut(s) 1987, 2019
BauI CACGAG 2 cut(s) 2358, 2930
BbsI GAAGAC 2 cut(s) 1908, 2834
Bbv12I GWGCWC 5 cut(s) 1660, 2241, 2926, 3658, 3875
BbvCI CCTCAGC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 2007
BciT130I CCWGG 6 cut(s) 96, 338, 371, 2248, 3248, 3530
BciVI GTATCC 2 cut(s) 1238, 3186
BclI TGATCA 1 cut(s) 2850
BcnI CCSGG 1 cut(s) 3574
BcoDI GTCTC 7 cut(s) 304, 322, 439, 1143, 2137, 2526, 3201
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 6 cut(s) 108, 804, 1233, 2525, 2540, 3183
BfmI CTRYAG 4 cut(s) 1059, 2007, 2193, 2568
BfrI CTTAAG 1 cut(s) 1990
BfuAI ACCTGC 1 cut(s) 2567
BfuI GTATCC 2 cut(s) 1238, 3186
BlpI GCTNAGC 2 cut(s) 70, 1491
BmcAI AGTACT 1 cut(s) 972
Bme1390I CCNGG 7 cut(s) 96, 338, 371, 2248, 3248, 3530, 3574
Bme18I GGWCC 2 cut(s) 756, 3026
BmgT120I GGNCC 6 cut(s) 756, 1534, 2520, 2521, 2819, 3026
BmiI GGNNCC 5 cut(s) 208, 757, 1407, 2522, 3028
BmrFI CCNGG 7 cut(s) 96, 338, 371, 2248, 3248, 3530, 3574
BmrI ACTGGG 1 cut(s) 969
BmtI GCTAGC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 969
BpiI GAAGAC 2 cut(s) 1908, 2834
BplI GAGNNNNNCTC 4 cut(s) 53, 85, 2913, 2945
BpmI CTGGAG 2 cut(s) 353, 504
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 2 cut(s) 70, 1491
BpuEI CTTGAG 1 cut(s) 2455
BpuMI CCSGG 1 cut(s) 3574
BsaBI GATNNNNATC 2 cut(s) 677, 3827
BsaI GGTCTC 2 cut(s) 322, 3201
BsaWI WCCGGW 4 cut(s) 1192, 2999, 3310, 3714
BsaXI ACNNNNNCTCC 8 cut(s) 339, 369, 477, 507, 2432, 2462, 3780, 3810
Bsc4I CCNNNNNNNGG 9 cut(s) 84, 343, 1322, 2231, 2360, 3035, 3317, 3529, 3706
Bse118I RCCGGY 1 cut(s) 3081
Bse1I ACTGG 7 cut(s) 487, 787, 964, 1003, 2062, 2174, 2907
Bse21I CCTNAGG 2 cut(s) 1530, 1836
Bse3DI GCAATG 6 cut(s) 118, 2145, 2586, 2630, 3435, 3597
Bse8I GATNNNNATC 2 cut(s) 677, 3827
BseAI TCCGGA 1 cut(s) 3310
BseBI CCWGG 6 cut(s) 96, 338, 371, 2248, 3248, 3530
BseGI GGATG 8 cut(s) 390, 698, 1201, 1421, 1462, 1648, 3646, 3848
BseJI GATNNNNATC 2 cut(s) 677, 3827
BseLI CCNNNNNNNGG 9 cut(s) 84, 343, 1322, 2231, 2360, 3035, 3317, 3529, 3706
BseMI GCAATG 6 cut(s) 118, 2145, 2586, 2630, 3435, 3597
BseNI ACTGG 7 cut(s) 487, 787, 964, 1003, 2062, 2174, 2907
BseRI GAGGAG 2 cut(s) 23, 2729
BseSI GKGCMC 3 cut(s) 1660, 2524, 3658
BseYI CCCAGC 1 cut(s) 2353
Bsh1236I CGCG 2 cut(s) 3429, 3604
BshFI GGCC 6 cut(s) 1536, 2522, 2820, 3085, 3187, 3497
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 5 cut(s) 1660, 2241, 2926, 3658, 3875
BsiSI CCGG 6 cut(s) 1193, 3000, 3082, 3311, 3573, 3715
BslFI GGGAC 2 cut(s) 3012, 3399
BslI CCNNNNNNNGG 9 cut(s) 84, 343, 1322, 2231, 2360, 3035, 3317, 3529, 3706
BsmAI GTCTC 7 cut(s) 304, 322, 439, 1143, 2137, 2526, 3201
BsmBI CGTCTC 1 cut(s) 2526
BsmFI GGGAC 2 cut(s) 3012, 3399
BsmI GAATGC 3 cut(s) 599, 1765, 3763
BsnI GGCC 6 cut(s) 1536, 2522, 2820, 3085, 3187, 3497
Bso31I GGTCTC 2 cut(s) 322, 3201
Bsp120I GGGCCC 1 cut(s) 2520
Bsp1286I GDGCHC 7 cut(s) 1660, 2241, 2524, 2926, 3623, 3658, 3875
Bsp13I TCCGGA 1 cut(s) 3310
Bsp1407I TGTACA 1 cut(s) 2662
Bsp1720I GCTNAGC 2 cut(s) 70, 1491
Bsp19I CCATGG 2 cut(s) 534, 2988
BspACI CCGC 7 cut(s) 1316, 1505, 2140, 2143, 2918, 3226, 3267
BspANI GGCC 6 cut(s) 1536, 2522, 2820, 3085, 3187, 3497
BspEI TCCGGA 1 cut(s) 3310
BspFNI CGCG 2 cut(s) 3429, 3604
BspHI TCATGA 4 cut(s) 40, 237, 847, 2676
BspLI GGNNCC 5 cut(s) 208, 757, 1407, 2522, 3028
BspMAI CTGCAG 2 cut(s) 1063, 2572
BspMI ACCTGC 1 cut(s) 2567
BspOI GCTAGC 1 cut(s) 111
BspPI GGATC 9 cut(s) 96, 283, 1009, 1307, 1826, 1980, 2317, 2344, 3302
BspQI GCTCTTC 2 cut(s) 3867, 3880
BspT107I GGYRCC 1 cut(s) 206
BspTI CTTAAG 1 cut(s) 1990
BspTNI GGTCTC 2 cut(s) 322, 3201
BsrBI CCGCTC 2 cut(s) 3228, 3267
BsrDI GCAATG 6 cut(s) 118, 2145, 2586, 2630, 3435, 3597
BsrFI RCCGGY 1 cut(s) 3081
BsrGI TGTACA 1 cut(s) 2662
BsrI ACTGG 7 cut(s) 487, 787, 964, 1003, 2062, 2174, 2907
BssAI RCCGGY 1 cut(s) 3081
BssSI CACGAG 2 cut(s) 2358, 2930
BssT1I CCWWGG 5 cut(s) 534, 912, 1625, 2326, 2988
Bst2BI CACGAG 2 cut(s) 2358, 2930
Bst2UI CCWGG 6 cut(s) 96, 338, 371, 2248, 3248, 3530
Bst6I CTCTTC 5 cut(s) 54, 1467, 2775, 3867, 3880
BstAFI CTTAAG 1 cut(s) 1990
BstAPI GCANNNNNTGC 5 cut(s) 665, 1046, 1664, 2486, 3662
BstAUI TGTACA 1 cut(s) 2662
BstC8I GCNNGC 9 cut(s) 109, 1320, 1497, 1865, 2383, 2613, 2722, 2941, 3606
BstDSI CCRYGG 3 cut(s) 534, 703, 2988
BstENI CCTNNNNNAGG 1 cut(s) 3527
BstF5I GGATG 8 cut(s) 390, 698, 1201, 1421, 1462, 1648, 3646, 3848
BstFNI CGCG 2 cut(s) 3429, 3604
BstHHI GCGC 3 cut(s) 2693, 3431, 3604
BstMAI GTCTC 7 cut(s) 304, 322, 439, 1143, 2137, 2526, 3201
BstNI CCWGG 6 cut(s) 96, 338, 371, 2248, 3248, 3530
BstNSI RCATGY 1 cut(s) 2604
BstSCI CCNGG 7 cut(s) 94, 336, 369, 2246, 3246, 3528, 3572
BstSFI CTRYAG 4 cut(s) 1059, 2007, 2193, 2568
BstSLI GKGCMC 3 cut(s) 1660, 2524, 3658
BstUI CGCG 2 cut(s) 3429, 3604
BstV2I GAAGAC 2 cut(s) 1908, 2834
BstX2I RGATCY 3 cut(s) 275, 1001, 1831
BstYI RGATCY 3 cut(s) 275, 1001, 1831
Bsu36I CCTNAGG 2 cut(s) 1530, 1836
BsuI GTATCC 2 cut(s) 1238, 3186
BsuRI GGCC 6 cut(s) 1536, 2522, 2820, 3085, 3187, 3497
BtgI CCRYGG 3 cut(s) 534, 703, 2988
BtgZI GCGATG 1 cut(s) 2629
BtsCI GGATG 8 cut(s) 390, 698, 1201, 1421, 1462, 1648, 3646, 3848
BtsI GCAGTG 1 cut(s) 3780
BtsIMutI CAGTG 9 cut(s) 480, 513, 1467, 1758, 2043, 2055, 2860, 3729, 3780
BveI ACCTGC 1 cut(s) 2567
Cac8I GCNNGC 9 cut(s) 109, 1320, 1497, 1865, 2383, 2613, 2722, 2941, 3606
CaiI CAGNNNCTG 4 cut(s) 863, 1490, 1673, 2381
CciI TCATGA 4 cut(s) 40, 237, 847, 2676
CfoI GCGC 3 cut(s) 2693, 3431, 3604
Cfr10I RCCGGY 1 cut(s) 3081
Cfr13I GGNCC 6 cut(s) 756, 1534, 2520, 2521, 2819, 3026
CseI GACGC 4 cut(s) 250, 2499, 2543, 2747
Csp6I GTAC 3 cut(s) 971, 1749, 2663
CspCI CAANNNNNGTGG 4 cut(s) 2044, 2079, 3708, 3743
CviQI GTAC 3 cut(s) 971, 1749, 2663
DrdI GACNNNNNNGTC 2 cut(s) 1547, 1947
DseDI GACNNNNNNGTC 2 cut(s) 1547, 1947
EaeI YGGCCR 2 cut(s) 3083, 3495
Eam1104I CTCTTC 5 cut(s) 54, 1467, 2775, 3867, 3880
EarI CTCTTC 5 cut(s) 54, 1467, 2775, 3867, 3880
EciI GGCGGA 1 cut(s) 2129
Ecl136II GAGCTC 2 cut(s) 2924, 3873
Eco130I CCWWGG 5 cut(s) 534, 912, 1625, 2326, 2988
Eco24I GRGCYC 4 cut(s) 2524, 2926, 3623, 3875
Eco31I GGTCTC 2 cut(s) 322, 3201
Eco32I GATATC 1 cut(s) 2337
Eco47I GGWCC 2 cut(s) 756, 3026
Eco53kI GAGCTC 2 cut(s) 2924, 3873
Eco57I CTGAAG 2 cut(s) 1491, 2799
Eco81I CCTNAGG 2 cut(s) 1530, 1836
EcoICRI GAGCTC 2 cut(s) 2924, 3873
EcoNI CCTNNNNNAGG 1 cut(s) 3527
EcoO109I RGGNCCY 4 cut(s) 1534, 2520, 2521, 2819
EcoRII CCWGG 6 cut(s) 94, 336, 369, 2246, 3246, 3528
EcoRV GATATC 1 cut(s) 2337
EcoT14I CCWWGG 5 cut(s) 534, 912, 1625, 2326, 2988
EcoT22I ATGCAT 3 cut(s) 1034, 3694, 3850
EcoT38I GRGCYC 4 cut(s) 2524, 2926, 3623, 3875
ErhI CCWWGG 5 cut(s) 534, 912, 1625, 2326, 2988
Esp3I CGTCTC 1 cut(s) 2526
FaqI GGGAC 2 cut(s) 3012, 3399
FauI CCCGC 1 cut(s) 2911
FauNDI CATATG 2 cut(s) 907, 2092
FbaI TGATCA 1 cut(s) 2850
FblI GTMKAC 1 cut(s) 2898
FokI GGATG 8 cut(s) 397, 685, 1208, 1408, 1469, 1655, 3653, 3835
FriOI GRGCYC 4 cut(s) 2524, 2926, 3623, 3875
FspBI CTAG 6 cut(s) 108, 804, 1233, 2525, 2540, 3183
GlaI GCGC 3 cut(s) 2692, 3430, 3603
GsaI CCCAGC 1 cut(s) 2357
GsuI CTGGAG 2 cut(s) 353, 504
HaeIII GGCC 6 cut(s) 1536, 2522, 2820, 3085, 3187, 3497
HapII CCGG 6 cut(s) 1193, 3000, 3082, 3311, 3573, 3715
HgaI GACGC 4 cut(s) 250, 2499, 2543, 2747
HhaI GCGC 3 cut(s) 2693, 3431, 3604
Hin6I GCGC 3 cut(s) 2691, 3429, 3602
HinP1I GCGC 3 cut(s) 2691, 3429, 3602
HincII GTYRAC 3 cut(s) 996, 1281, 1714
HindII GTYRAC 3 cut(s) 996, 1281, 1714
HindIII AAGCTT 1 cut(s) 3166
HpaI GTTAAC 1 cut(s) 1714
HpaII CCGG 6 cut(s) 1193, 3000, 3082, 3311, 3573, 3715
Hpy99I CGWCG 1 cut(s) 2515
HpyAV CCTTC 6 cut(s) 538, 845, 2779, 2799, 2810, 2929
HpyCH4IV ACGT 3 cut(s) 1895, 2961, 3589
HpySE526I ACGT 3 cut(s) 1895, 2961, 3589
HspAI GCGC 3 cut(s) 2691, 3429, 3602
Kpn2I TCCGGA 1 cut(s) 3310
Ksp22I TGATCA 1 cut(s) 2850
KspAI GTTAAC 1 cut(s) 1714
LguI GCTCTTC 2 cut(s) 3867, 3880
LmnI GCTCC 5 cut(s) 347, 1841, 2921, 3023, 3264
MaeI CTAG 6 cut(s) 108, 804, 1233, 2525, 2540, 3183
MaeII ACGT 3 cut(s) 1895, 2961, 3589
MaeIII GTNAC 5 cut(s) 388, 509, 1136, 2024, 3104
MbiI CCGCTC 2 cut(s) 3228, 3267
MfeI CAATTG 2 cut(s) 750, 2481
MflI RGATCY 3 cut(s) 275, 1001, 1831
MhlI GDGCHC 7 cut(s) 1660, 2241, 2524, 2926, 3623, 3658, 3875
MlsI TGGCCA 1 cut(s) 3497
MluNI TGGCCA 1 cut(s) 3497
MlyI GAGTC 6 cut(s) 1892, 1957, 1972, 3119, 3381, 3711
MmeI TCCRAC 6 cut(s) 529, 1237, 2509, 2725, 3232, 3618
Mox20I TGGCCA 1 cut(s) 3497
Mph1103I ATGCAT 3 cut(s) 1034, 3694, 3850
MroI TCCGGA 1 cut(s) 3310
MroXI GAANNNNTTC 3 cut(s) 135, 2002, 2684
MscI TGGCCA 1 cut(s) 3497
MslI CAYNNNNRTG 1 cut(s) 1027
Msp20I TGGCCA 1 cut(s) 3497
MspA1I CMGCKG 7 cut(s) 353, 565, 860, 1490, 1570, 2567, 2611
MspCI CTTAAG 1 cut(s) 1990
MspI CCGG 6 cut(s) 1193, 3000, 3082, 3311, 3573, 3715
MspR9I CCNGG 7 cut(s) 96, 338, 371, 2248, 3248, 3530, 3574
MunI CAATTG 2 cut(s) 750, 2481
Mva1269I GAATGC 3 cut(s) 599, 1765, 3763
MvaI CCWGG 6 cut(s) 96, 338, 371, 2248, 3248, 3530
MvnI CGCG 2 cut(s) 3429, 3604
NciI CCSGG 1 cut(s) 3574
NcoI CCATGG 2 cut(s) 534, 2988
NdeI CATATG 2 cut(s) 907, 2092
NheI GCTAGC 1 cut(s) 107
NlaIV GGNNCC 5 cut(s) 208, 757, 1407, 2522, 3028
NmuCI GTSAC 4 cut(s) 388, 509, 1136, 2024
NsiI ATGCAT 3 cut(s) 1034, 3694, 3850
NspI RCATGY 1 cut(s) 2604
PagI TCATGA 4 cut(s) 40, 237, 847, 2676
PciSI GCTCTTC 2 cut(s) 3867, 3880
PctI GAATGC 3 cut(s) 599, 1765, 3763
PdmI GAANNNNTTC 3 cut(s) 135, 2002, 2684
PflFI GACNNNGTC 2 cut(s) 296, 3701
PleI GAGTC 6 cut(s) 1891, 1956, 1971, 3118, 3381, 3710
PpsI GAGTC 6 cut(s) 1891, 1956, 1971, 3118, 3381, 3710
PshBI ATTAAT 1 cut(s) 3825
PsiI TTATAA 5 cut(s) 593, 686, 810, 1068, 2255
Psp124BI GAGCTC 2 cut(s) 2926, 3875
Psp6I CCWGG 6 cut(s) 94, 336, 369, 2246, 3246, 3528
PspFI CCCAGC 1 cut(s) 2353
PspGI CCWGG 6 cut(s) 94, 336, 369, 2246, 3246, 3528
PspN4I GGNNCC 5 cut(s) 208, 757, 1407, 2522, 3028
PspOMI GGGCCC 1 cut(s) 2520
PspPI GGNCC 6 cut(s) 756, 1534, 2520, 2521, 2819, 3026
PstI CTGCAG 2 cut(s) 1063, 2572
PstNI CAGNNNCTG 4 cut(s) 863, 1490, 1673, 2381
PsuI RGATCY 3 cut(s) 275, 1001, 1831
PsyI GACNNNGTC 2 cut(s) 296, 3701
PvuII CAGCTG 7 cut(s) 353, 565, 860, 1490, 1570, 2567, 2611
RsaI GTAC 3 cut(s) 972, 1750, 2664
RsaNI GTAC 3 cut(s) 971, 1749, 2663
RseI CAYNNNNRTG 1 cut(s) 1027
SacI GAGCTC 2 cut(s) 2926, 3875
SapI GCTCTTC 2 cut(s) 3867, 3880
Sau96I GGNCC 6 cut(s) 756, 1534, 2520, 2521, 2819, 3026
ScaI AGTACT 1 cut(s) 972
SchI GAGTC 6 cut(s) 1892, 1957, 1972, 3119, 3381, 3711
ScrFI CCNGG 7 cut(s) 96, 338, 371, 2248, 3248, 3530, 3574
SduI GDGCHC 7 cut(s) 1660, 2241, 2524, 2926, 3623, 3658, 3875
SfcI CTRYAG 4 cut(s) 1059, 2007, 2193, 2568
SinI GGWCC 2 cut(s) 756, 3026
SmiMI CAYNNNNRTG 1 cut(s) 1027
SmlI CTYRAG 2 cut(s) 1990, 2470
SmoI CTYRAG 2 cut(s) 1990, 2470
SpeI ACTAGT 1 cut(s) 803
SsiI CCGC 7 cut(s) 1316, 1505, 2140, 2143, 2918, 3226, 3267
SspI AATATT 4 cut(s) 441, 1206, 1441, 2229
SspMI CTAG 6 cut(s) 108, 804, 1233, 2525, 2540, 3183
SstI GAGCTC 2 cut(s) 2926, 3875
StyD4I CCNGG 7 cut(s) 94, 336, 369, 2246, 3246, 3528, 3572
StyI CCWWGG 5 cut(s) 534, 912, 1625, 2326, 2988
TaiI ACGT 3 cut(s) 1898, 2964, 3592
TaqI TCGA 3 cut(s) 465, 1946, 1961
TaqII GACCGA 1 cut(s) 3714
TatI WGTACW 3 cut(s) 970, 1748, 2662
TauI GCSGC 2 cut(s) 1508, 2145
TscAI CASTG 9 cut(s) 487, 520, 1474, 1758, 2043, 2062, 2860, 3729, 3780
TseFI GTSAC 4 cut(s) 388, 509, 1136, 2024
Tsp45I GTSAC 4 cut(s) 388, 509, 1136, 2024
TspRI CASTG 9 cut(s) 487, 520, 1474, 1758, 2043, 2062, 2860, 3729, 3780
Tth111I GACNNNGTC 2 cut(s) 296, 3701
Vha464I CTTAAG 1 cut(s) 1990
VneI GTGCAC 2 cut(s) 1656, 3654
VpaK11BI GGWCC 2 cut(s) 756, 3026
VspI ATTAAT 1 cut(s) 3825
XagI CCTNNNNNAGG 1 cut(s) 3527
XapI RAATTY 8 cut(s) 286, 326, 554, 1358, 1511, 1819, 1999, 3003
XceI RCATGY 1 cut(s) 2604
XmiI GTMKAC 1 cut(s) 2898
XmnI GAANNNNTTC 3 cut(s) 135, 2002, 2684
XspI CTAG 6 cut(s) 108, 804, 1233, 2525, 2540, 3183
ZrmI AGTACT 1 cut(s) 972
Zsp2I ATGCAT 3 cut(s) 1034, 3694, 3850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.