Rroxscaffold_6G00426220

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
47031788 .. 47037020
5233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426220.1

Sequence Viewer

Length: 3885 bp
ATGGCAGAGAGAAATGGCTTGGGTGGCAATACAAATATGGATGAAGATGAAGCACCACCATCAGAAAGCAAAGCGGAAAAAGCAAACAGAAGCTGTAGCATCACTGAGATACAGGAAGACTCAAAGAAGAAGCAGACCAAAGGAAATGAGACTGTTCCATTTCTCAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTATTGATGACCATCGGCACAGTTGGTGCCATTGGGAATGGTTTGTGTATGCCCATTATGACTGTACTCTTTGGCCAACTGACTGATTCTTTTGGATATAACTACAATAGCAAAGACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTGTACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGGTTGGAAAGTTTTTACAACTAATATCGACATTCATTGGAGGCATTGTCATAGCATTCATCAGGGGTTGGCTTCTAACCCTCGTCCTGATGTCCACTATTCCATTTCTTGTGGCAGCCGGAGCAATAATGTCCATTATCGTAGTCAAAACGGCTTCCCGAGGACAAAATGCGTATGCGAAAGCTGCAACTGTAGTTGAACAAACAATCAGCTCAATCAAAACTGTTGCATCATTTACCGGAGAGACACAAGCTATAACCAACTATAAGAAATATCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTGGGTTTTGGCATGTTTATGTTTGTCATGTTATCCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAACGAGGATATAAAGGAGGCGCTGTGGTCAATGTGATTGTTGCTGTGGTGGCTGGTTCCATGTCTCTAGGCCAGGTATCTCCCTGTATGAGTGCATTTGCTGCTGGTCAGGCTGCAGCCTTTAAGATGTTTGAGACTATAAAGAGGAAACCAGAGATAGATGCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGACATAGAGCTGAGGGATATTTACTTCAGTTATCCAACCAGACCGAACGAACAAATATTCCATGGATTGACTCTGAGTATCCCTAGTGGCACAACTACAGCTTTGGTTGGGCAAAGTGGAAGCGGAAAGTCGACAGTGATCTGCCTGATAGAGAGATTCTATGATCCATGGGCTGGTGAGGTTCTCGTAGATGGTATCAACCTCAAAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTAGTCAGCCAGGAACCGGTGTTGTTTGCATCGAGCATCCGGGACAATATTTTATATGGAAAGGATGGTGCAACTTCTGAAGAGATAAGAGCAGCATTAGTACTTGCAAATGCTGCTAAGTTCATTGACAAATTGCCTCAGGGACTGGACACCATGGTTGGGGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGAGGGTTGCCATAGCTCGCGCAGTTCTTAAAGACCCACGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACTGAGCTAATTGTACAAGAGGCATTGGACAGAATTATGGTCAATCGAACTACTCTCATTGTTGCTCATCGTTTGAGCACGGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGGTTGAGAAAGGTCCACACTCGGAACTAGTTAGGAATCCTGATGGAGCCTACTCTCAGCTTATACACTTGCAAGAATTAAGTGAAGAAACAGAACAAGCTGCAGACCATCAAACAACGTCAGAAATCAGTACAGAATCTTTTAAAAAGATGAGTAAAAAAAAGTCATTACAACGATCCTTAAGTCATGATTCCTCCGGAGCAGGAAGTAGCAGCCGCCACTCATTCAAACTACCATTCGGTTTTCCCACAGGACTTGAGGTAGTAGATATTGTCACAAAAGAACCAGAATCCCTTACAACAACCATGCAACAATCTCCAAAGGCTCCTATCCGCCGCCTTGCCTACCTTAACAAGCCAGAGATTCCAGTGCTAGTAATTGGAGCTACAGCTGCAATAGCCAATGGTGCGATATTTCCAATTGTTGGTCTAATAATTTCCAGTGCCATCAAAACATTATATGAACCACCTCATCAACTCAAAAAAGATTCCAAGTTTTGGGCACTAATGTATGTGACCCTTGGTCTGGCTTCCTTACTGGTGATTCCAGTAAGATCATACTTCTTTTCTGTGGCTGGATGCAAGCTAATTGAACGTATTAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGATTGGTTGGTTTGATGAGCCTCGGAGTGGCGAAATTGGTGCAAAGCTCTCGGCAAATGCAGCCACAGTGCGCTCCCTAGTTGGTGATGCACTTGCTCAGCTGATTGGAAATATTGCATCGGCAGTTGCCGGTTTAGTGATTGCTTTTGTTGCATGTTGGCAGCTGGCATTTATTGTCCTGGTATTGTTCCCTCTTATTGGTGTCACAGGATATATGGAATTAAAATTTATAAAAGGGTTCAGCGCAGATTCAAAGATGATGTATGAGGAAGCAAGCCAGGTTGCTACCGATGCAGTTGGGAGTATAAGAACAGTTGCTTCTTTCTGCGCCGAACAGAAGGTGGTGCAACAATACAACACAAAATGTGAAGGCCCTATGAGGACAGGGATAAGGCAAGGCATTATCAGTGGCATGGGATTCGGATTATCGTTCTTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTATGCAGGAGCTCAACTTGTGGTGCATGGCAAAACAACATTCTTAGATGTTTTTCGGGTTTTCTTTTCTCTAACTATGGCTGCTATGACGATTTCTCAATCGAGTTCCTTAGCTCCTGATTCATCTAAAGCCAATGCTGCTACTGCTTCTATCTTTGCCATAATAGACCAGGAGTCAAAGATTGATCCAAGTGATGAGTCTGGGATGACAATGGACAATGTAAAGGGAGATATTGAGCTTCGTAATGTATGCTTCAGGTATCCGTCCAGGCCAGACGTTCAGATTTTTCAAGACCTCAACCTAGTTATTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACCGTGATCTCACTGTTGCAAAGATTTTATGATCCTAACTCGGGTCACATTACACTCGATGGTGTTGAAATTTGGAAGTTCCAATTGAAGTGGCTGAGGCAACAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATTCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCGACAGAAGCTGAAATCCTGGCTGCATCCGAGTCTGCGAATGCCCACAATTTCATTAGTGGCTTACAAGAGGGCTATGACACCATAGTGGGGGAACGAGGAGTCCAATTGTCAGGTGGACAGAAGCAACGTGTAGCGATTGCGCGTGCTATTGTTAAATGCCCCAAGATCTTACTACTAGATGAGGCTACCAGTGCACTAGATGCTGAATCTGAGAGAGTAGTACAAGATGCATTAGACCTTGTCATGCTGAATCGGACAACAGTTGTGGTGGCACATAGATTATCTACAATCAGAAATGCAAACGTAATTGCAGTTGTCAGAGACGGAGCTGTAGTAGAGAAAGGAAAGCATGAGACTTTGATTAGCGTCAAGGATGGTTTCTATGCCTCCTTAGTTGCATTACACAATACACATCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

1294

Amino Acids

140.15

Weight (kDa)

6.77

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 70 - 342 2.5e-57 ABC transporter transmembrane region
ABC_tran PF00005 411 - 559 1e-31 ABC transporter
ABC_membrane PF00664 731 - 1001 1.1e-51 ABC transporter transmembrane region
ABC_tran PF00005 1069 - 1218 2.1e-32 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2681
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 3 cut(s) 1343, 2240, 2313
AccI GTMKAC 3 cut(s) 354, 1301, 2901
AccII CGCG 2 cut(s) 1629, 3604
AccIII TCCGGA 1 cut(s) 2012
AciI CCGC 5 cut(s) 74, 1293, 2032, 2149, 2152
AclWI GGATC 6 cut(s) 1328, 1403, 1986, 3095, 3302, 3388
AcoI YGGCCR 2 cut(s) 271, 408
AcsI RAATTY 2 cut(s) 2675, 3345
AcuI CTGAAG 3 cut(s) 1180, 1512, 3154
AfaI GTAC 6 cut(s) 264, 449, 1515, 1707, 1948, 3684
AflII CTTAAG 1 cut(s) 1996
AflIII ACRYGT 1 cut(s) 3589
AgeI ACCGGT 1 cut(s) 1429
AgsI TTSAA 8 cut(s) 189, 764, 2044, 2408, 2703, 3206, 3344, 3364
AhdI GACNNNNNGTC 2 cut(s) 2337, 3088
AhlI ACTAGT 1 cut(s) 1843
AjnI CCWGG 9 cut(s) 357, 390, 1038, 1422, 2628, 2727, 3084, 3182, 3477
AleI CACNNNNGTG 2 cut(s) 2435, 3545
AloI GAACNNNNNNTCC 4 cut(s) 1212, 1244, 3546, 3578
Alw21I GWGCWC 4 cut(s) 1681, 1772, 2929, 3658
Alw26I GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3777, 3809
Alw44I GTGCAC 2 cut(s) 1677, 3654
AlwI GGATC 6 cut(s) 1328, 1403, 1986, 3095, 3302, 3388
AlwNI CAGNNNCTG 4 cut(s) 93, 1558, 1694, 3470
Ama87I CYCGRG 2 cut(s) 723, 3316
Aor13HI TCCGGA 1 cut(s) 2012
AoxI GGCC 5 cut(s) 271, 408, 1036, 2821, 3185
ApaLI GTGCAC 2 cut(s) 1677, 3654
ApoI RAATTY 2 cut(s) 2675, 3345
AsiGI ACCGGT 1 cut(s) 1429
AspLEI GCGC 6 cut(s) 989, 1631, 2523, 2696, 2780, 3604
AspS9I GGNCC 2 cut(s) 1829, 2822
AsuC2I CCSGG 1 cut(s) 1454
AsuHPI GGTGA 6 cut(s) 542, 1181, 1358, 1786, 2368, 2546
AvaI CYCGRG 2 cut(s) 723, 3316
AvaII GGWCC 1 cut(s) 1829
AxyI CCTNAGG 1 cut(s) 1551
BaeGI GKGCMC 3 cut(s) 1681, 2320, 3658
BalI TGGCCA 2 cut(s) 273, 410
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 2929
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 4 cut(s) 1681, 1772, 2929, 3658
BbvCI CCTCAGC 2 cut(s) 1181, 3371
BceAI ACGGC 1 cut(s) 732
BcgI CGANNNNNNTGC 6 cut(s) 2471, 2481, 2505, 2515, 2851, 2885
BciT130I CCWGG 9 cut(s) 359, 392, 1040, 1424, 2630, 2729, 3086, 3184, 3479
BciVI GTATCC 2 cut(s) 1259, 3186
BcnI CCSGG 1 cut(s) 1454
BcoDI GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3777, 3809
BcuI ACTAGT 1 cut(s) 1843
BfmI CTRYAG 7 cut(s) 94, 756, 1080, 1266, 1917, 2202, 3792
BfoI RGCGCY 1 cut(s) 990
BfrI CTTAAG 1 cut(s) 1996
BfuI GTATCC 2 cut(s) 1259, 3186
BglII AGATCT 1 cut(s) 3627
BlpI GCTNAGC 1 cut(s) 2547
BmcAI AGTACT 1 cut(s) 1515
Bme18I GGWCC 1 cut(s) 1829
BmeRI GACNNNNNGTC 2 cut(s) 2337, 3088
BmeT110I CYCGRG 2 cut(s) 723, 3316
BmgT120I GGNCC 2 cut(s) 1829, 2822
BmiI GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2142
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 374, 525
Bpu10I CCTNAGC 3 cut(s) 1181, 3025, 3371
Bpu1102I GCTNAGC 1 cut(s) 2547
BpuEI CTTGAG 2 cut(s) 149, 2093
BpuMI CCSGG 1 cut(s) 1454
BsaBI GATNNNNATC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 8 cut(s) 333, 724, 1231, 1337, 1566, 2335, 2471, 3246
BsaWI WCCGGW 3 cut(s) 803, 1429, 2012
BsaXI ACNNNNNCTCC 8 cut(s) 498, 528, 597, 627, 975, 1005, 3780, 3810
Bse118I RCCGGY 2 cut(s) 1429, 2579
Bse21I CCTNAGG 1 cut(s) 1551
Bse3DI GCAATG 3 cut(s) 561, 1791, 3435
Bse8I GATNNNNATC 1 cut(s) 209
BseAI TCCGGA 1 cut(s) 2012
BseBI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2630, 2729, 3086, 3184, 3479
BseDI CCNNGG 8 cut(s) 333, 724, 1231, 1337, 1566, 2335, 2471, 3246
BseJI GATNNNNATC 1 cut(s) 209
BseMI GCAATG 3 cut(s) 561, 1791, 3435
BseRI GAGGAG 1 cut(s) 3573
BseSI GKGCMC 3 cut(s) 1681, 2320, 3658
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 1629, 3604
BshFI GGCC 5 cut(s) 273, 410, 1038, 2823, 3187
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 1429
BsiHKAI GWGCWC 4 cut(s) 1681, 1772, 2929, 3658
BsiHKCI CYCGRG 2 cut(s) 723, 3316
BsiSI CCGG 7 cut(s) 684, 804, 885, 1430, 1453, 2013, 2580
BslFI GGGAC 3 cut(s) 1469, 1569, 3399
BsmAI GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3777, 3809
BsmBI CGTCTC 1 cut(s) 3777
BsmFI GGGAC 3 cut(s) 1469, 1569, 3399
BsmI GAATGC 4 cut(s) 383, 620, 1786, 3505
BsnI GGCC 5 cut(s) 273, 410, 1038, 2823, 3187
Bso31I GGTCTC 1 cut(s) 343
BsoBI CYCGRG 2 cut(s) 723, 3316
Bsp1286I GDGCHC 5 cut(s) 1681, 1772, 2320, 2929, 3658
Bsp13I TCCGGA 1 cut(s) 2012
Bsp1407I TGTACA 1 cut(s) 1705
Bsp1720I GCTNAGC 1 cut(s) 2547
Bsp19I CCATGG 3 cut(s) 1231, 1337, 1566
BspACI CCGC 5 cut(s) 74, 1293, 2032, 2149, 2152
BspANI GGCC 5 cut(s) 273, 410, 1038, 2823, 3187
BspEI TCCGGA 1 cut(s) 2012
BspFNI CGCG 2 cut(s) 1629, 3604
BspHI TCATGA 2 cut(s) 868, 2002
BspLI GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2142
BspMAI CTGCAG 2 cut(s) 1084, 1921
BspPI GGATC 6 cut(s) 1328, 1403, 1986, 3095, 3302, 3388
BspT107I GGYRCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 1996
BspTNI GGTCTC 1 cut(s) 343
BsrDI GCAATG 3 cut(s) 561, 1791, 3435
BsrFI RCCGGY 2 cut(s) 1429, 2579
BsrGI TGTACA 1 cut(s) 1705
BssAI RCCGGY 2 cut(s) 1429, 2579
BssECI CCNNGG 8 cut(s) 333, 724, 1231, 1337, 1566, 2335, 2471, 3246
BssT1I CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2335, 3246
Bst2UI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2630, 2729, 3086, 3184, 3479
Bst6I CTCTTC 1 cut(s) 1488
BstAFI CTTAAG 1 cut(s) 1996
BstAPI GCANNNNNTGC 4 cut(s) 1067, 1526, 1685, 3662
BstAUI TGTACA 1 cut(s) 1705
BstC8I GCNNGC 7 cut(s) 400, 433, 1627, 2399, 2616, 2725, 3606
BstDSI CCRYGG 3 cut(s) 1231, 1337, 1566
BstFNI CGCG 2 cut(s) 1629, 3604
BstH2I RGCGCY 1 cut(s) 990
BstHHI GCGC 6 cut(s) 989, 1631, 2523, 2696, 2780, 3604
BstMAI GTCTC 7 cut(s) 143, 343, 803, 1035, 1094, 3777, 3809
BstNI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2630, 2729, 3086, 3184, 3479
BstNSI RCATGY 2 cut(s) 904, 2607
BstSFI CTRYAG 7 cut(s) 94, 756, 1080, 1266, 1917, 2202, 3792
BstSLI GKGCMC 3 cut(s) 1681, 2320, 3658
BstUI CGCG 2 cut(s) 1629, 3604
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 3627
BstYI RGATCY 1 cut(s) 3627
Bsu36I CCTNAGG 1 cut(s) 1551
BsuI GTATCC 2 cut(s) 1259, 3186
BsuRI GGCC 5 cut(s) 273, 410, 1038, 2823, 3187
BtgI CCRYGG 3 cut(s) 1231, 1337, 1566
Cac8I GCNNGC 7 cut(s) 400, 433, 1627, 2399, 2616, 2725, 3606
CaiI CAGNNNCTG 4 cut(s) 93, 1558, 1694, 3470
CciI TCATGA 2 cut(s) 868, 2002
CfoI GCGC 6 cut(s) 989, 1631, 2523, 2696, 2780, 3604
Cfr10I RCCGGY 2 cut(s) 1429, 2579
Cfr13I GGNCC 2 cut(s) 1829, 2822
CseI GACGC 1 cut(s) 3817
Csp6I GTAC 6 cut(s) 263, 448, 1514, 1706, 1947, 3683
CspAI ACCGGT 1 cut(s) 1429
CspCI CAANNNNNGTGG 6 cut(s) 2053, 2088, 3347, 3382, 3708, 3743
CviQI GTAC 6 cut(s) 263, 448, 1514, 1706, 1947, 3683
DraI TTTAAA 1 cut(s) 1960
DriI GACNNNNNGTC 2 cut(s) 2337, 3088
EaeI YGGCCR 2 cut(s) 271, 408
Eam1104I CTCTTC 1 cut(s) 1488
Eam1105I GACNNNNNGTC 2 cut(s) 2337, 3088
EarI CTCTTC 1 cut(s) 1488
EciI GGCGGA 1 cut(s) 2138
Ecl136II GAGCTC 1 cut(s) 2927
Eco130I CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2335, 3246
Eco24I GRGCYC 1 cut(s) 2929
Eco31I GGTCTC 1 cut(s) 343
Eco32I GATATC 2 cut(s) 196, 1789
Eco47I GGWCC 1 cut(s) 1829
Eco53kI GAGCTC 1 cut(s) 2927
Eco57I CTGAAG 3 cut(s) 1180, 1512, 3154
Eco81I CCTNAGG 1 cut(s) 1551
Eco88I CYCGRG 2 cut(s) 723, 3316
EcoICRI GAGCTC 1 cut(s) 2927
EcoO109I RGGNCCY 1 cut(s) 2822
EcoRII CCWGG 9 cut(s) 357, 390, 1038, 1422, 2628, 2727, 3084, 3182, 3477
EcoRV GATATC 2 cut(s) 196, 1789
EcoT14I CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2335, 3246
EcoT22I ATGCAT 1 cut(s) 3694
EcoT38I GRGCYC 1 cut(s) 2929
ErhI CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2335, 3246
Esp3I CGTCTC 1 cut(s) 3777
FaqI GGGAC 3 cut(s) 1469, 1569, 3399
FauNDI CATATG 1 cut(s) 3442
FblI GTMKAC 3 cut(s) 354, 1301, 2901
FriOI GRGCYC 1 cut(s) 2929
GlaI GCGC 6 cut(s) 988, 1630, 2522, 2695, 2779, 3603
GsuI CTGGAG 2 cut(s) 374, 525
HaeII RGCGCY 1 cut(s) 990
HaeIII GGCC 5 cut(s) 273, 410, 1038, 2823, 3187
HapII CCGG 7 cut(s) 684, 804, 885, 1430, 1453, 2013, 2580
HgaI GACGC 1 cut(s) 3817
HhaI GCGC 6 cut(s) 989, 1631, 2523, 2696, 2780, 3604
Hin6I GCGC 6 cut(s) 987, 1629, 2521, 2694, 2778, 3602
HinP1I GCGC 6 cut(s) 987, 1629, 2521, 2694, 2778, 3602
HincII GTYRAC 1 cut(s) 1302
HindII GTYRAC 1 cut(s) 1302
HpaII CCGG 7 cut(s) 684, 804, 885, 1430, 1453, 2013, 2580
HphI GGTGA 6 cut(s) 542, 1181, 1358, 1786, 2368, 2546
HpyAV CCTTC 5 cut(s) 559, 866, 2782, 2813, 3446
HpyCH4IV ACGT 5 cut(s) 1934, 2410, 3192, 3589, 3765
HpySE526I ACGT 5 cut(s) 1934, 2410, 3192, 3589, 3765
HspAI GCGC 6 cut(s) 987, 1629, 2521, 2694, 2778, 3602
Kpn2I TCCGGA 1 cut(s) 2012
MaeII ACGT 5 cut(s) 1934, 2410, 3192, 3589, 3765
MaeIII GTNAC 5 cut(s) 1169, 2089, 2329, 2653, 3320
MboII GAAGA 8 cut(s) 56, 128, 139, 475, 1505, 1793, 1913, 2875
MfeI CAATTG 3 cut(s) 2235, 3359, 3566
MflI RGATCY 1 cut(s) 3627
MhlI GDGCHC 5 cut(s) 1681, 1772, 2320, 2929, 3658
MlsI TGGCCA 2 cut(s) 273, 410
MluNI TGGCCA 2 cut(s) 273, 410
MlyI GAGTC 6 cut(s) 113, 1234, 3098, 3122, 3500, 3570
MmeI TCCRAC 3 cut(s) 550, 1229, 3232
Mox20I TGGCCA 2 cut(s) 273, 410
Mph1103I ATGCAT 1 cut(s) 3694
MroI TCCGGA 1 cut(s) 2012
MscI TGGCCA 2 cut(s) 273, 410
MslI CAYNNNNRTG 3 cut(s) 905, 2435, 3545
Msp20I TGGCCA 2 cut(s) 273, 410
MspA1I CMGCKG 4 cut(s) 1591, 2207, 2551, 2614
MspCI CTTAAG 1 cut(s) 1996
MspI CCGG 7 cut(s) 684, 804, 885, 1430, 1453, 2013, 2580
MunI CAATTG 3 cut(s) 2235, 3359, 3566
Mva1269I GAATGC 4 cut(s) 383, 620, 1786, 3505
MvaI CCWGG 9 cut(s) 359, 392, 1040, 1424, 2630, 2729, 3086, 3184, 3479
MvnI CGCG 2 cut(s) 1629, 3604
NciI CCSGG 1 cut(s) 1454
NcoI CCATGG 3 cut(s) 1231, 1337, 1566
NdeI CATATG 1 cut(s) 3442
NlaIV GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2142
NmeAIII GCCGAG 1 cut(s) 2480
NmuCI GTSAC 5 cut(s) 1169, 2089, 2329, 2653, 3320
NsiI ATGCAT 1 cut(s) 3694
NspI RCATGY 2 cut(s) 904, 2607
OliI CACNNNNGTG 2 cut(s) 2435, 3545
PagI TCATGA 2 cut(s) 868, 2002
PctI GAATGC 4 cut(s) 383, 620, 1786, 3505
PflFI GACNNNGTC 1 cut(s) 3701
PflMI CCANNNNNTGG 3 cut(s) 1343, 2240, 2313
PfoI TCCNGGA 1 cut(s) 1452
PinAI ACCGGT 1 cut(s) 1429
PleI GAGTC 6 cut(s) 113, 1234, 3097, 3121, 3499, 3569
PpsI GAGTC 6 cut(s) 113, 1234, 3097, 3121, 3499, 3569
PsiI TTATAA 1 cut(s) 2681
Psp124BI GAGCTC 1 cut(s) 2929
Psp6I CCWGG 9 cut(s) 357, 390, 1038, 1422, 2628, 2727, 3084, 3182, 3477
PspGI CCWGG 9 cut(s) 357, 390, 1038, 1422, 2628, 2727, 3084, 3182, 3477
PspN4I GGNNCC 5 cut(s) 226, 1024, 1428, 1864, 2142
PspPI GGNCC 2 cut(s) 1829, 2822
PstI CTGCAG 2 cut(s) 1084, 1921
PstNI CAGNNNCTG 4 cut(s) 93, 1558, 1694, 3470
PsuI RGATCY 1 cut(s) 3627
PsyI GACNNNGTC 1 cut(s) 3701
PvuII CAGCTG 4 cut(s) 1591, 2207, 2551, 2614
RsaI GTAC 6 cut(s) 264, 449, 1515, 1707, 1948, 3684
RsaNI GTAC 6 cut(s) 263, 448, 1514, 1706, 1947, 3683
RseI CAYNNNNRTG 3 cut(s) 905, 2435, 3545
SacI GAGCTC 1 cut(s) 2929
SalI GTCGAC 1 cut(s) 1300
Sau96I GGNCC 2 cut(s) 1829, 2822
ScaI AGTACT 1 cut(s) 1515
SchI GAGTC 6 cut(s) 113, 1234, 3098, 3122, 3500, 3570
SduI GDGCHC 5 cut(s) 1681, 1772, 2320, 2929, 3658
SfcI CTRYAG 7 cut(s) 94, 756, 1080, 1266, 1917, 2202, 3792
SinI GGWCC 1 cut(s) 1829
SmiMI CAYNNNNRTG 3 cut(s) 905, 2435, 3545
SmlI CTYRAG 3 cut(s) 164, 1996, 2072
SmoI CTYRAG 3 cut(s) 164, 1996, 2072
SpeI ACTAGT 1 cut(s) 1843
SsiI CCGC 5 cut(s) 74, 1293, 2032, 2149, 2152
SspI AATATT 4 cut(s) 1227, 1462, 1653, 2563
SstI GAGCTC 1 cut(s) 2929
StyI CCWWGG 6 cut(s) 333, 1231, 1337, 1566, 2335, 3246
TaiI ACGT 5 cut(s) 1937, 2413, 3195, 3592, 3768
TaqI TCGA 7 cut(s) 486, 593, 1301, 1445, 1738, 3017, 3333
TaqII GACCGA 1 cut(s) 1228
TatI WGTACW 5 cut(s) 262, 1513, 1705, 1946, 3682
TauI GCSGC 2 cut(s) 2034, 2154
TseFI GTSAC 5 cut(s) 1169, 2089, 2329, 2653, 3320
Tsp45I GTSAC 5 cut(s) 1169, 2089, 2329, 2653, 3320
TspGWI ACGGA 2 cut(s) 3168, 3801
Tth111I GACNNNGTC 1 cut(s) 3701
Van91I CCANNNNNTGG 3 cut(s) 1343, 2240, 2313
Vha464I CTTAAG 1 cut(s) 1996
VneI GTGCAC 2 cut(s) 1677, 3654
VpaK11BI GGWCC 1 cut(s) 1829
XapI RAATTY 2 cut(s) 2675, 3345
XbaI TCTAGA 1 cut(s) 1660
XceI RCATGY 2 cut(s) 904, 2607
XcmI CCANNNNNNNNNTGG 2 cut(s) 931, 3572
XmiI GTMKAC 3 cut(s) 354, 1301, 2901
ZrmI AGTACT 1 cut(s) 1515
Zsp2I ATGCAT 1 cut(s) 3694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.