RLG00000027246

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
9920060 .. 9923138
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027246

Sequence Viewer

Length: 390 bp
ATGTTACAAAACTTCCTACCAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTATTGATACAATATCCGGCAGCAGTTCATACCAAAATATGGCATTTTTTGGCAGTGGTATAACATTGGCTTATTTACCACCAGGGTTGCAGGAACCAATAGTGAAGAAGTTGGATTTGGAGAAGGGAATGATGGACTACCGATATGCAAAGTGGGTTGATGTTAAATATGAAGAGATAATTGAAGCAACTTCAATTGACTCCAGCAAAGTCTTACGGTCCTGCACTGCTCAGGTACCTGAGATCAGGAGAATGCTAATTGAGGAACTTTGCCTTCAGTCTATGATAGGTCACTGCTCAGGTGCTTTTGGGGGTTTGGAAGCTAATGCTAGAGTGTAA

Protein Analysis

130

Amino Acids

13.83

Weight (kDa)

5.09

Isoelectric Point (pI)

68.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AccB7I CCANNNNNTGG 2 cut(s) 26, 91
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 26, 91
AgsI TTSAA 2 cut(s) 236, 246
AjnI CCWGG 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 72
Asp718I GGTACC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 270
AvaII GGWCC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 135
BfaI CTAG 1 cut(s) 381
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 147, 288
BmrFI CCNGG 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 238
Bpu10I CCTNAGC 2 cut(s) 282, 349
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 91
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 26, 91
BseMII CTCAG 3 cut(s) 282, 296, 363
BseXI GCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 26, 91
BsmI GAATGC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 294
BspCNI CTCAG 3 cut(s) 283, 295, 362
BspLI GGNNCC 2 cut(s) 147, 288
BspT107I GGYRCC 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 3 cut(s) 282, 291, 349
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 84
BtsI GCAGTG 3 cut(s) 112, 276, 343
BtsIMutI CAGTG 3 cut(s) 112, 276, 343
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviJI RGCY 2 cut(s) 122, 374
CviKI_1 RGCY 2 cut(s) 122, 374
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 3 cut(s) 282, 291, 349
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 133
FaiI YATR 6 cut(s) 82, 92, 113, 198, 222, 335
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 381
GluI GCNGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 238
HapII CCGG 1 cut(s) 69
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 169, 335
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 142, 200, 276
HpyF3I CTNAG 3 cut(s) 282, 291, 349
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 1 cut(s) 294
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 3, 341
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 2 cut(s) 169, 236
MfeI CAATTG 1 cut(s) 246
MluCI AATT 3 cut(s) 231, 246, 309
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 1 cut(s) 307
MseI TTAA 1 cut(s) 216
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 135
NdeII GATC 1 cut(s) 294
NlaIV GGNNCC 2 cut(s) 147, 288
NmuCI GTSAC 1 cut(s) 341
PctI GAATGC 1 cut(s) 309
PflMI CCANNNNNTGG 2 cut(s) 26, 91
PkrI GCNGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 147, 288
PspPI GGNCC 1 cut(s) 270
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 135
SetI ASST 5 cut(s) 288, 292, 343, 355, 376
SinI GGWCC 1 cut(s) 270
Sse9I AATT 3 cut(s) 231, 246, 309
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 270
TasI AATT 3 cut(s) 231, 246, 309
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 3 cut(s) 112, 283, 350
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 69, 237
TspRI CASTG 3 cut(s) 112, 283, 350
Van91I CCANNNNNTGG 2 cut(s) 26, 91
VpaK11BI GGWCC 1 cut(s) 270
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.