Rw4G023660

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
49322837 .. 49328294
5458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023660.1

Sequence Viewer

Length: 3858 bp
ATGGCTGATCACGAAGAACAGTCAGATGGAGATGTATTAAAAGAGCCGGCCATAGCATCAACAAAGACAGCAGATTCCGAAAACAACAAGCACGATACTGCAGGCAAGAGCAAGGAGGGTGCAACCAACACAGTACCATATTACAAGCTCTTCTCATTTGCTGATTCCCTGGATTACCTGTTAATGTCTGTTGGTACGATCAGTGCTATCGGAAATGGAGTATGTATGCCTCTAATGACCGTGATCATGGGGGAGGTGATCAACTCTTTTGGAGAAACTACAAGTATCAATAAAGTGGTTGGTATAGTTTCCAAGGTGGCTCTCAAGTACGTTTACTTGGCTCTGGGGGCTGCTGCTGCTGCATTTTTACAAATGTCCTGTTGGATGATCACTGGAGAGAGACAGGCAGCAAGAATAAGAAGTTTATACTTGAAAACAATACTAAGGCAAGACATTGGCTTTTTTGATACGGAGGCTAACACTGGGGAAATTGTTGGCAGGATGTCGGGGGATACTGTGCTCATTCAGGAAGCAATGGGGGAGAAAGTAGGAAGTTTTATCCAGTTAGTTGCTACATTCATAGGAGGCTTTGTTATAGCATTTGCCAAGGGATGGCGTCTCACCCTTGTCATGCTAACCTCTATTCCCCCTCTTATCTTATCCGGTGCTGTCATGAGCCTCACTATAAGGAAGTTGGCGTCCCGTGGACAAGAGGCATATTCAGTTGGAGCAACTGTTGTAGAGCAGACAATTGGATCTATCAGAACTGTTGCATCATTTACGGGGGAGAAGCAAGCTATAACCAAGTACAACAACTCCTTAACTAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTGGCATCAGGGTTGGGTCTTGGTATGGTTGTGCTTGTTGTATTCTGCAGTTATGCTTTGGCTGTATGGTATGGCGGAAAAACGATACTTGAACAGGGATATAAAGCAGGAGATGTCATGAATGTGATTTTTGCTGTATTGACCGGCTCTTTCTCTCTTGGGCAGGCATCTCCATGCGTGAGTGCATTTTCTGCTGGACAAGCTGCATCATTTAAGATGTTTGAGACAATTAACAGAAAGCCAGATATAGATGCTTATGACACAAATGGGATGGAATCAGAAGACATTCGTGGAGACATAGAACTTAGGGATGTTTCTTTTAGTTATCCTGCAAGACCGGATGAAAAAATATTCCATGGATTCTCACTCTCAATATCTAGTGGTGCAACTGCCGCTTTGGTTGGACAGAGTGGAAGTGGTAAATCGACTGTAATTAGTTTGATTGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATTGATGGTATTAATCTCAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCTGTTTTGTTTACTTGCAGCATTAGAGATAATATTGGCTATGGGAAGGATGGCGCAACTACTGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCTGCTAAGTTCATAGACAAACTACCTCAGGGGCTAGATACAATGGTTGGTGAGCATGGAACTCAGCTATCTGGGGGCCAAAAGCAGAGAGTTGCTATAGCCAGAGCAATTTTAAAGAACCCAAAAATTCTTCTTTTAGATGAAGCAACAAGTGCTCTTGATGCAGAATCTGAGAGAGCTGTGCAAGAGGCATTGGACAGAATTATGGTTAGTCGGACTACTGTCATTGTAGCGCACCGCTTGAGCACAGTAAGGAATGCTGATACCATTGCAGTGATACATCGCGGAACAATTGTTGAGCAAGGACCACATACTGAGCTAGTTAAGGATCCTGATGGTGCATATAGCCAGCTTATAAGGTTGCAAGAAATTAGCAGTGTGTCCAAACAGAATGCTCAAAATGATCATGAAAGGCCAGAACTTTCTTCAAGTTTTCAAAAACTTCCTTCCTTTCGCTCTATGAGTAGGGGATCATCTGGAAGAGGAAATAGTCGCCGCCGCAGCCACTCATTCTCAATCTCACATGGTGCACCCACTGTGACCGGTGTCCTTGAAATAGAAACTGATATTCCGGCTTCAGCATCATCAGAAGTGCACCCACAAGTCTCACTTAGACGCCTGGCTCACCTGAATAAGCCAGAAATCCCAGTGCTATTCCTAGGTACTATAGCTGCAATAGTCAATGGGGTAACCTTGCCTATTTTCGGGGTGTTAATATCCAGTATAATCAAGACCTTCTTTGAGCCACCTCATCAACTCCGAAAGGATTCTAAGTTTTGGGCATTAATATTTATTGTTCTTGGAGTGGTGTCTCTCTTGGCACATCCAATGAGAGCATACTTTTTTGCTGTAGCTGGGTGCAAGTTAATAAGACGAGTCCGTTCACTATGCTTTGAGAAGGTGGTTTACATGGAAGTAAGTTGGTTTGATGAAGCTGATCACTCGAGTGGTGCAATTGGTGCAAGGCTTTCGGCAAATGCAGCTTCCCTACGGGGGATGGTTGGAGATGCTCTAGGTTTGGCTGTCATGAATACTTCAACTACAATTGCCGGGTTGGTTATTGCTTTTGTGGCAAATTGGCAACTCGCTCTTATAATACTTGTTATGCTGCCCCTGCTAGGAATAAGTGGATATTTTCAAGTCGAGTTCCTGAAAGGATTAAGTGCAAATGCAAAGAAAATGTATGAAGATGCAAGCCAAGTAGCCACAGATGCTGTGGGGAGTATTAGAACAGTTGCTTCCTTTTGTGCTGAAGAAAAGGTGATCAAGTTGTACCAGACAAAATGTGAAGGCCCTATCAGGAGTGGGATAAGACAAGGGATAGTTAGTGGCATAGGCTTTGGGCTATCATTTTTCTTGCTTTATTCTGTATATGCATGCAGTTTTTATGCTGGGGCTCGACTTGTTGCAGCAGGCGAGACAACATTTCCTAATGTTTTTCGGGTTTTCTTTGCTCTCACTATGACAGCTATTGCATTGACTCAACAGAGTTCTTTAGCCCCGGATGCAAGTAAAGGAAAGAGCTCTGCCGCTTCCATATTTGCAATTCTTGACCGGAAATCCAAGATAGATTCAAGTGATGACTCCGGAACAACAATAGAAAATCTGAAGGGAGAAATTGAGTTTCGCCATGTTAGTTTCAAATATCCGAATAGACCTAATGTGCCCATCTTTCAGGATCTTTGCTTGACCATTCGCCATGGCAAGACAGTTGCTCTGGTTGGAGAGAGTGGAAGTGGGAAGTCGACAGTGATCTCATTGTTGCAGCGCTTTTATGATCCTGATTCAGGTCAAATTACATTAGATGGTACAGAAATGCAAACATTACAGTTGAAGTGGTTGAGACAGCAAATGGGGCTGGTGAGTCAGGAGCCCCTATTGTTTAATGACACAATCCGAGCCAACATTGCATATGGAAAGGAAGGAGAGGCAACTGAGGCTGAAATTATAGCAGCAGCAGAATTGGCAAATGCTCACAAGTTCATTAGTAGTTTACAACAGGGTTATGACACAATAGTGGGTGAACGAGGGGTTCAACTTTCTGGTGGACAGAAGCAAAGGGTAGCTATTGCAAGAGCTATAATGAAGGCACCAAAGATATTACTACTAGATGAAGCCACCAGTGCTCTTGATGCTGAATCCGAAAGAGTGGTTCAAGATGCACTGGATCGAGTTATGGTGGATCGAACTACAGTGGTGGTTGCCCATCGGCTATCCACAATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTCATTGCAGAGAAAGGAAAGCACGAGACTTTGATCAGTATCGAGGGTGGTACTTATGCTTCTTTGGTATCACTACATGCAAGTACCTCATCTTAG

Protein Analysis

1285

Amino Acids

138.3

Weight (kDa)

7.3

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 64 - 336 1.7e-61 ABC transporter transmembrane region
ABC_tran PF00005 404 - 552 5.3e-34 ABC transporter
ABC_membrane PF00664 719 - 991 2e-57 ABC transporter transmembrane region
ABC_tran PF00005 1060 - 1209 4.2e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02520 AT1G02520 AT1G02520 AT1G02530 AT1G02530 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT2G47000 AT3G62150 AT3G62150 AT3G62150 AT4G01820 AT4G01820 AT4G01830 AT4G01830
fragaria_vesca FvH4_1g26280 FvH4_4g21370 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21380 FvH4_4g21381 FvH4_4g21600 FvH4_4g21600 FvH4_4g21600 FvH4_4g21620 FvH4_4g21621 FvH4_4g21622 FvH4_6g00641 FvH4_6g00650
malus_domestica MD09G1290100.v1.1 MD13G1138600.v1.1 MD13G1138700.v1.1 MD13G1139100.v1.1 MD16G1134500.v1.1 MD16G1134700.v1.1 MD16G1135000.v1.1 MD16G1135100.v1.1 MD17G1284300.v1.1 MD17G1284700.v1.1
prunus_persica Prupe.1G103800_v2.0.a1 Prupe.1G103800_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G103900_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104100_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104300_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.1G104400_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.2G166500_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G003100_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123700_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1 Prupe.3G123800_v2.0.a1
pyrus_communis pycom04g08750 pycom09g19770 pycom09g19790 pycom13g09140 pycom16g11900 pycom16g11920 pycom16g11930 pycom17g28030
rosa_chinensis RchiOBHm_Chr2g0157341 RchiOBHm_Chr3g0448061 RchiOBHm_Chr3g0485931 RchiOBHm_Chr3g0485961 RchiOBHm_Chr4g0427151 RchiOBHm_Chr4g0427161 RchiOBHm_Chr4g0427211 RchiOBHm_Chr4g0427241 RchiOBHm_Chr4g0427271 RchiOBHm_Chr4g0427711 RchiOBHm_Chr4g0427721 RchiOBHm_Chr4g0427771 RchiOBHm_Chr4g0427781 RchiOBHm_Chr4g0427791 RchiOBHm_Chr4g0427851 RchiOBHm_Chr4g0427861 RchiOBHm_Chr4g0446561 RchiOBHm_Chr5g0081601 RchiOBHm_Chr6g0278251 RchiOBHm_Chr6g0303241
rosa_laevigata RLG00000007206 RLG00000007207 RLG00000007209 RLG00000007210 RLG00000007211 RLG00000007212 RLG00000007214 RLG00000007255 RLG00000007256 RLG00000007257 RLG00000011097 RLG00000019257 RLG00000023121 RLG00000025948 RLG00000027246 RLG00000029989
rosa_multiflora Rmu_co8076196.1_g000001 Rmu_co8517461.1_g000001 Rmu_sc0000066.1_g000018 Rmu_sc0000066.1_g000024 Rmu_sc0000066.1_g000033 Rmu_sc0000066.1_g000047 Rmu_sc0000066.1_g000048 Rmu_sc0001651.1_g000024 Rmu_sc0002816.1_g000003 Rmu_sc0003337.1_g000015 Rmu_sc0003444.1_g000015 Rmu_sc0003813.1_g000004 Rmu_sc0004876.1_g000001 Rmu_sc0005969.1_g000025 Rmu_sc0008650.1_g000006 Rmu_sc0008855.1_g000001 Rmu_sc0009165.1_g000001 Rmu_sc0009165.1_g000002 Rmu_sc0010010.1_g000001 Rmu_sc0010010.1_g000005 Rmu_sc0036078.1_g000001
rosa_roxburghii Rroxscaffold_2G00130200 Rroxscaffold_5G00367590 Rroxscaffold_5G00368970 Rroxscaffold_5G00368990 Rroxscaffold_5G00369340 Rroxscaffold_5G00369350 Rroxscaffold_5G00369380 Rroxscaffold_5G00369390 Rroxscaffold_5G00369440 Rroxscaffold_5G00369450 Rroxscaffold_5G00369500 Rroxscaffold_5G00369510 Rroxscaffold_6G00396190 Rroxscaffold_6G00426220 Rroxscaffold_6G00427790 Rroxscaffold_7G00164940
rosa_rugosa Rorug01G0160800.1 Rorug02G0341400 Rorug02G0461800 Rorug02G0608000 Rorug03G0222700 Rorug03G0222800 Rorug03G0222900 Rorug04G0216400 Rorug04G0216400 Rorug04G0220100 Rorug04G0220100 Rorug04G0220100 Rorug05G0181800 Rorug05G0409700
rosa_samantha Rh1BG177300 Rh1DG206800 Rh2AG590600 Rh2BG473400 Rh2DG482300 Rh3AG007500 Rh3AG272400 Rh3BG007200 Rh3BG307000 Rh3DG301600 Rh3DG301900 Rh4AG272300 Rh4AG272400 Rh4AG272700 Rh4AG275900 Rh4AG276100 Rh4AG276200 Rh4AG276500 Rh4AG276600 Rh4AG276700 Rh4AG277000 Rh4BG281900 Rh4BG282200 Rh4CG292900 Rh4CG293300 Rh4CG293400 Rh4CG293600 Rh4CG297400 Rh4CG297500 Rh4CG297900 Rh4CG298000 Rh4CG298300 Rh4CG298400 Rh4DG165900 Rh5BG011400 Rh5DG092900 Rh6AG434000 Rh6CG153300 Rh6CG391700 Rh7BG333600
rosa_wichuraiana Rw0G005570 Rw0G005590 Rw0G011850 Rw0G015530 Rw0G017350 Rw0G019580 Rw3G000600 Rw3G024160 Rw4G023620 Rw4G023640 Rw4G023660 Rw4G023670 Rw4G023950 Rw4G023960 Rw4G024050 Rw4G024060 Rw5G048020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1859, 2597
AccB1I GGYRCC 1 cut(s) 3592
AccB7I CCANNNNNTGG 2 cut(s) 612, 1322
AccI GTMKAC 1 cut(s) 3248
AccII CGCG 1 cut(s) 1788
AccIII TCCGGA 1 cut(s) 3089
AciI CCGC 7 cut(s) 930, 1248, 1741, 1788, 1999, 2002, 3033
AclWI GGATC 9 cut(s) 763, 1382, 1826, 1839, 1981, 3189, 3275, 3678, 3693
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 1629
AcuI CTGAAG 4 cut(s) 1491, 2064, 2775, 3131
AcyI GRCGYC 3 cut(s) 616, 698, 2119
AdeI CACNNNGTG 1 cut(s) 2030
AfaI GTAC 9 cut(s) 135, 196, 329, 809, 2167, 2777, 3313, 3814, 3847
AfeI AGCGCT 1 cut(s) 3272
AfiI CCNNNNNNNGG 6 cut(s) 612, 1322, 2207, 2496, 2621, 3290
AgeI ACCGGT 1 cut(s) 2045
AjnI CCWGG 3 cut(s) 168, 1401, 2121
AleI CACNNNNGTG 2 cut(s) 2448, 3518
Alw21I GWGCWC 7 cut(s) 522, 1660, 1751, 2035, 2100, 3029, 3631
Alw26I GTCTC 9 cut(s) 394, 623, 1073, 1143, 2113, 2319, 2915, 3340, 3782
Alw44I GTGCAC 2 cut(s) 2031, 2096
AlwI GGATC 9 cut(s) 763, 1382, 1826, 1839, 1981, 3189, 3275, 3678, 3693
AlwNI CAGNNNCTG 2 cut(s) 1673, 2717
Ama87I CYCGRG 1 cut(s) 2446
Aor13HI TCCGGA 1 cut(s) 3089
Aor51HI AGCGCT 1 cut(s) 3272
AoxI GGCC 5 cut(s) 48, 1390, 1579, 1916, 2794
ApaLI GTGCAC 2 cut(s) 2031, 2096
ApoI RAATTY 1 cut(s) 1629
AseI ATTAAT 2 cut(s) 1347, 2288
AsiGI ACCGGT 1 cut(s) 2045
Asp700I GAANNNNTTC 2 cut(s) 1140, 2269
AspA2I CCTAGG 1 cut(s) 2161
AspLEI GCGC 3 cut(s) 1463, 1738, 3273
AspS9I GGNCC 3 cut(s) 1579, 1808, 2795
AsuC2I CCSGG 2 cut(s) 2554, 3005
AsuHPI GGTGA 9 cut(s) 268, 613, 1337, 1565, 2120, 2776, 3376, 3536, 3763
AvaI CYCGRG 1 cut(s) 2446
AvaII GGWCC 1 cut(s) 1808
AvrII CCTAGG 1 cut(s) 2161
AxyI CCTNAGG 1 cut(s) 1530
BaeGI GKGCMC 3 cut(s) 2035, 2100, 3171
BaeI ACNNNNGTAYC 2 cut(s) 1533, 1566
BamHI GGATCC 1 cut(s) 1831
BanI GGYRCC 1 cut(s) 3592
BanII GRGCYC 3 cut(s) 2902, 3029, 3378
BarI GAAGNNNNNNTAC 4 cut(s) 2393, 2425, 3805, 3837
BauI CACGAG 1 cut(s) 3785
BbsI GAAGAC 1 cut(s) 1143
Bbv12I GWGCWC 7 cut(s) 522, 1660, 1751, 2035, 2100, 3029, 3631
BcgI CGANNNNNNTGC 2 cut(s) 2454, 2488
BciT130I CCWGG 3 cut(s) 170, 1403, 2123
BciVI GTATCC 1 cut(s) 505
BclI TGATCA 8 cut(s) 7, 243, 258, 387, 1906, 2440, 2766, 3795
BcnI CCSGG 2 cut(s) 2554, 3005
BcoDI GTCTC 9 cut(s) 394, 623, 1073, 1143, 2113, 2319, 2915, 3340, 3782
BfaI CTAG 7 cut(s) 1233, 1538, 1823, 2162, 2516, 2621, 3611
BfmI CTRYAG 6 cut(s) 99, 901, 1599, 2169, 2352, 3693
BfoI RGCGCY 1 cut(s) 3274
BfuI GTATCC 1 cut(s) 505
BlnI CCTAGG 1 cut(s) 2161
BlpI GCTNAGC 1 cut(s) 1491
Bme1390I CCNGG 5 cut(s) 170, 1403, 2123, 2554, 3005
Bme18I GGWCC 1 cut(s) 1808
BmeT110I CYCGRG 1 cut(s) 2446
BmgT120I GGNCC 3 cut(s) 1579, 1808, 2795
BmiI GGNNCC 5 cut(s) 1407, 1580, 1833, 3375, 3594
BmrFI CCNGG 5 cut(s) 170, 1403, 2123, 2554, 3005
BmrI ACTGGG 2 cut(s) 492, 2144
BmuI ACTGGG 2 cut(s) 492, 2144
BoxI GACNNNNGTC 2 cut(s) 1724, 2048
BpiI GAAGAC 1 cut(s) 1143
BpmI CTGGAG 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 1491
BpuEI CTTGAG 2 cut(s) 308, 1765
BpuMI CCSGG 2 cut(s) 2554, 3005
BsaBI GATNNNNATC 1 cut(s) 3800
BsaHI GRCGYC 3 cut(s) 616, 698, 2119
BsaJI CCNNGG 8 cut(s) 168, 312, 606, 703, 1210, 2161, 3003, 3202
BsaWI WCCGGW 5 cut(s) 662, 1192, 2045, 3057, 3089
BsaXI ACNNNNNCTCC 6 cut(s) 576, 606, 720, 750, 800, 830
Bsc4I CCNNNNNNNGG 6 cut(s) 612, 1322, 2207, 2496, 2621, 3290
Bse118I RCCGGY 3 cut(s) 46, 998, 2045
Bse1I ACTGG 7 cut(s) 397, 487, 562, 2150, 2223, 3624, 3672
Bse21I CCTNAGG 1 cut(s) 1530
Bse3DI GCAATG 4 cut(s) 540, 1770, 3408, 3765
Bse8I GATNNNNATC 1 cut(s) 3800
BseAI TCCGGA 1 cut(s) 3089
BseBI CCWGG 3 cut(s) 170, 1403, 2123
BseDI CCNNGG 8 cut(s) 168, 312, 606, 703, 1210, 2161, 3003, 3202
BseJI GATNNNNATC 1 cut(s) 3800
BseLI CCNNNNNNNGG 6 cut(s) 612, 1322, 2207, 2496, 2621, 3290
BseMI GCAATG 4 cut(s) 540, 1770, 3408, 3765
BseMII CTCAG 6 cut(s) 1482, 1544, 1580, 1665, 1809, 3429
BseNI ACTGG 7 cut(s) 397, 487, 562, 2150, 2223, 3624, 3672
BseSI GKGCMC 3 cut(s) 2035, 2100, 3171
BseYI CCCAGC 2 cut(s) 2357, 2894
BsgI GTGCAG 1 cut(s) 3753
Bsh1236I CGCG 1 cut(s) 1788
BshFI GGCC 5 cut(s) 50, 1392, 1581, 1918, 2796
BshNI GGYRCC 1 cut(s) 3592
BshTI ACCGGT 1 cut(s) 2045
BsiHKAI GWGCWC 7 cut(s) 522, 1660, 1751, 2035, 2100, 3029, 3631
BsiHKCI CYCGRG 1 cut(s) 2446
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 6 cut(s) 612, 1322, 2207, 2496, 2621, 3290
BsmAI GTCTC 9 cut(s) 394, 623, 1073, 1143, 2113, 2319, 2915, 3340, 3782
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 685
BsmI GAATGC 2 cut(s) 1765, 1900
BsnI GGCC 5 cut(s) 50, 1392, 1581, 1918, 2796
BsoBI CYCGRG 1 cut(s) 2446
Bsp13I TCCGGA 1 cut(s) 3089
Bsp1720I GCTNAGC 1 cut(s) 1491
Bsp19I CCATGG 2 cut(s) 1210, 3202
BspACI CCGC 7 cut(s) 930, 1248, 1741, 1788, 1999, 2002, 3033
BspANI GGCC 5 cut(s) 50, 1392, 1581, 1918, 2796
BspCNI CTCAG 6 cut(s) 1483, 1543, 1579, 1666, 1810, 3430
BspEI TCCGGA 1 cut(s) 3089
BspFNI CGCG 1 cut(s) 1788
BspHI TCATGA 4 cut(s) 672, 972, 1909, 2529
BspLI GGNNCC 5 cut(s) 1407, 1580, 1833, 3375, 3594
BspMAI CTGCAG 2 cut(s) 103, 905
BspPI GGATC 9 cut(s) 763, 1382, 1826, 1839, 1981, 3189, 3275, 3678, 3693
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 3592
BsrDI GCAATG 4 cut(s) 540, 1770, 3408, 3765
BsrFI RCCGGY 3 cut(s) 46, 998, 2045
BsrI ACTGG 7 cut(s) 397, 487, 562, 2150, 2223, 3624, 3672
BssAI RCCGGY 3 cut(s) 46, 998, 2045
BssECI CCNNGG 8 cut(s) 168, 312, 606, 703, 1210, 2161, 3003, 3202
BssNI GRCGYC 3 cut(s) 616, 698, 2119
BssSI CACGAG 1 cut(s) 3785
BssT1I CCWWGG 5 cut(s) 312, 606, 1210, 2161, 3202
Bst2BI CACGAG 1 cut(s) 3785
Bst2UI CCWGG 3 cut(s) 170, 1403, 2123
Bst6I CTCTTC 2 cut(s) 155, 1978
BstACI GRCGYC 3 cut(s) 616, 698, 2119
BstAPI GCANNNNNTGC 3 cut(s) 1046, 1655, 2462
BstC8I GCNNGC 9 cut(s) 48, 103, 795, 1020, 1497, 1853, 2698, 2881, 2917
BstDSI CCRYGG 3 cut(s) 703, 1210, 3202
BstEII GGTNACC 1 cut(s) 2191
BstENI CCTNNNNNAGG 1 cut(s) 3288
BstFNI CGCG 1 cut(s) 1788
BstH2I RGCGCY 1 cut(s) 3274
BstHHI GCGC 3 cut(s) 1463, 1738, 3273
BstMAI GTCTC 9 cut(s) 394, 623, 1073, 1143, 2113, 2319, 2915, 3340, 3782
BstNI CCWGG 3 cut(s) 170, 1403, 2123
BstNSI RCATGY 2 cut(s) 2883, 3842
BstPAI GACNNNNGTC 2 cut(s) 1724, 2048
BstPI GGTNACC 1 cut(s) 2191
BstSCI CCNGG 5 cut(s) 168, 1401, 2121, 2552, 3003
BstSFI CTRYAG 6 cut(s) 99, 901, 1599, 2169, 2352, 3693
BstSLI GKGCMC 3 cut(s) 2035, 2100, 3171
BstUI CGCG 1 cut(s) 1788
BstV2I GAAGAC 1 cut(s) 1143
BstX2I RGATCY 3 cut(s) 755, 1831, 3181
BstYI RGATCY 3 cut(s) 755, 1831, 3181
Bsu36I CCTNAGG 1 cut(s) 1530
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 5 cut(s) 50, 1392, 1581, 1918, 2796
BtgI CCRYGG 3 cut(s) 703, 1210, 3202
BtgZI GCGATG 1 cut(s) 1769
BtsI GCAGTG 3 cut(s) 1782, 1885, 3753
Cac8I GCNNGC 9 cut(s) 48, 103, 795, 1020, 1497, 1853, 2698, 2881, 2917
CaiI CAGNNNCTG 2 cut(s) 1673, 2717
CciI TCATGA 4 cut(s) 672, 972, 1909, 2529
CfoI GCGC 3 cut(s) 1463, 1738, 3273
Cfr10I RCCGGY 3 cut(s) 46, 998, 2045
Cfr13I GGNCC 3 cut(s) 1579, 1808, 2795
CseI GACGC 3 cut(s) 605, 687, 2127
Csp6I GTAC 9 cut(s) 134, 195, 328, 808, 2166, 2776, 3312, 3813, 3846
CspAI ACCGGT 1 cut(s) 2045
CviQI GTAC 9 cut(s) 134, 195, 328, 808, 2166, 2776, 3312, 3813, 3846
DraI TTTAAA 1 cut(s) 1617
DraIII CACNNNGTG 1 cut(s) 2030
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 155, 1978
EarI CTCTTC 2 cut(s) 155, 1978
EciI GGCGGA 1 cut(s) 945
Ecl136II GAGCTC 1 cut(s) 3027
Eco130I CCWWGG 5 cut(s) 312, 606, 1210, 2161, 3202
Eco147I AGGCCT 1 cut(s) 1392
Eco24I GRGCYC 3 cut(s) 2902, 3029, 3378
Eco47I GGWCC 1 cut(s) 1808
Eco47III AGCGCT 1 cut(s) 3272
Eco53kI GAGCTC 1 cut(s) 3027
Eco57I CTGAAG 4 cut(s) 1491, 2064, 2775, 3131
Eco81I CCTNAGG 1 cut(s) 1530
Eco88I CYCGRG 1 cut(s) 2446
Eco91I GGTNACC 1 cut(s) 2191
EcoICRI GAGCTC 1 cut(s) 3027
EcoNI CCTNNNNNAGG 1 cut(s) 3288
EcoO109I RGGNCCY 1 cut(s) 2795
EcoO65I GGTNACC 1 cut(s) 2191
EcoRII CCWGG 3 cut(s) 168, 1401, 2121
EcoT14I CCWWGG 5 cut(s) 312, 606, 1210, 2161, 3202
EcoT22I ATGCAT 1 cut(s) 2881
EcoT38I GRGCYC 3 cut(s) 2902, 3029, 3378
ErhI CCWWGG 5 cut(s) 312, 606, 1210, 2161, 3202
Esp3I CGTCTC 1 cut(s) 623
FalI AAGNNNNNCTT 4 cut(s) 2097, 2129, 2225, 2257
FaqI GGGAC 1 cut(s) 685
FauNDI CATATG 1 cut(s) 3415
FbaI TGATCA 8 cut(s) 7, 243, 258, 387, 1906, 2440, 2766, 3795
FblI GTMKAC 1 cut(s) 3248
FriOI GRGCYC 3 cut(s) 2902, 3029, 3378
FspBI CTAG 7 cut(s) 1233, 1538, 1823, 2162, 2516, 2621, 3611
GlaI GCGC 3 cut(s) 1462, 1737, 3272
GsaI CCCAGC 2 cut(s) 2361, 2898
GsuI CTGGAG 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 3274
HaeIII GGCC 5 cut(s) 50, 1392, 1581, 1918, 2796
HgaI GACGC 3 cut(s) 605, 687, 2127
HhaI GCGC 3 cut(s) 1463, 1738, 3273
Hin1I GRCGYC 3 cut(s) 616, 698, 2119
Hin6I GCGC 3 cut(s) 1461, 1736, 3271
HinP1I GCGC 3 cut(s) 1461, 1736, 3271
HincII GTYRAC 1 cut(s) 3249
HindII GTYRAC 1 cut(s) 3249
HindIII AAGCTT 1 cut(s) 828
HphI GGTGA 9 cut(s) 268, 613, 1337, 1565, 2120, 2776, 3376, 3536, 3763
HpyAV CCTTC 8 cut(s) 1447, 1959, 2248, 2395, 2786, 3106, 3419, 3583
HpyCH4IV ACGT 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 3 cut(s) 616, 698, 2119
HspAI GCGC 3 cut(s) 1461, 1736, 3271
Kpn2I TCCGGA 1 cut(s) 3089
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Ksp22I TGATCA 8 cut(s) 7, 243, 258, 387, 1906, 2440, 2766, 3795
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 2 cut(s) 728, 3373
MaeI CTAG 7 cut(s) 1233, 1538, 1823, 2162, 2516, 2621, 3611
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 2041, 2191
MboII GAAGA 9 cut(s) 26, 142, 1148, 1484, 1625, 1920, 1995, 2702, 2768
MfeI CAATTG 4 cut(s) 750, 1794, 2457, 2547
MflI RGATCY 3 cut(s) 755, 1831, 3181
MlyI GAGTC 5 cut(s) 2388, 2977, 3080, 3376, 3771
MmeI TCCRAC 6 cut(s) 362, 706, 1237, 1697, 2485, 3205
Mph1103I ATGCAT 1 cut(s) 2881
MroI TCCGGA 1 cut(s) 3089
MroNI GCCGGC 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 1140, 2269
MslI CAYNNNNRTG 5 cut(s) 977, 1027, 1775, 2448, 3518
MspA1I CMGCKG 1 cut(s) 1366
MspR9I CCNGG 5 cut(s) 170, 1403, 2123, 2554, 3005
MunI CAATTG 4 cut(s) 750, 1794, 2457, 2547
Mva1269I GAATGC 2 cut(s) 1765, 1900
MvaI CCWGG 3 cut(s) 170, 1403, 2123
MvnI CGCG 1 cut(s) 1788
NaeI GCCGGC 1 cut(s) 48
NciI CCSGG 2 cut(s) 2554, 3005
NcoI CCATGG 2 cut(s) 1210, 3202
NdeI CATATG 1 cut(s) 3415
NgoMIV GCCGGC 1 cut(s) 46
NlaIV GGNNCC 5 cut(s) 1407, 1580, 1833, 3375, 3594
NmuCI GTSAC 1 cut(s) 2041
NsiI ATGCAT 1 cut(s) 2881
NspI RCATGY 2 cut(s) 2883, 3842
OliI CACNNNNGTG 2 cut(s) 2448, 3518
PaeI GCATGC 1 cut(s) 2883
PaeR7I CTCGAG 1 cut(s) 2446
PagI TCATGA 4 cut(s) 672, 972, 1909, 2529
PceI AGGCCT 1 cut(s) 1392
PciSI GCTCTTC 1 cut(s) 155
PctI GAATGC 2 cut(s) 1765, 1900
PdiI GCCGGC 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 1140, 2269
PfeI GAWTC 9 cut(s) 74, 164, 1130, 1215, 1670, 2270, 3074, 3287, 3641
PflMI CCANNNNNTGG 2 cut(s) 612, 1322
PinAI ACCGGT 1 cut(s) 2045
PleI GAGTC 5 cut(s) 2387, 2977, 3080, 3375, 3770
PpsI GAGTC 5 cut(s) 2387, 2977, 3080, 3375, 3770
PshAI GACNNNNGTC 2 cut(s) 1724, 2048
PshBI ATTAAT 2 cut(s) 1347, 2288
PsiI TTATAA 2 cut(s) 1859, 2597
Psp124BI GAGCTC 1 cut(s) 3029
Psp6I CCWGG 3 cut(s) 168, 1401, 2121
PspEI GGTNACC 1 cut(s) 2191
PspFI CCCAGC 2 cut(s) 2357, 2894
PspGI CCWGG 3 cut(s) 168, 1401, 2121
PspN4I GGNNCC 5 cut(s) 1407, 1580, 1833, 3375, 3594
PspPI GGNCC 3 cut(s) 1579, 1808, 2795
PspXI VCTCGAGB 1 cut(s) 2446
PstI CTGCAG 2 cut(s) 103, 905
PstNI CAGNNNCTG 2 cut(s) 1673, 2717
PsuI RGATCY 3 cut(s) 755, 1831, 3181
PvuII CAGCTG 1 cut(s) 1366
RsaI GTAC 9 cut(s) 135, 196, 329, 809, 2167, 2777, 3313, 3814, 3847
RsaNI GTAC 9 cut(s) 134, 195, 328, 808, 2166, 2776, 3312, 3813, 3846
RseI CAYNNNNRTG 5 cut(s) 977, 1027, 1775, 2448, 3518
SacI GAGCTC 1 cut(s) 3029
SalI GTCGAC 1 cut(s) 3247
SapI GCTCTTC 1 cut(s) 155
Sau96I GGNCC 3 cut(s) 1579, 1808, 2795
SchI GAGTC 5 cut(s) 2388, 2977, 3080, 3376, 3771
ScrFI CCNGG 5 cut(s) 170, 1403, 2123, 2554, 3005
SfcI CTRYAG 6 cut(s) 99, 901, 1599, 2169, 2352, 3693
Sfr274I CTCGAG 1 cut(s) 2446
SinI GGWCC 1 cut(s) 1808
SlaI CTCGAG 1 cut(s) 2446
SmiMI CAYNNNNRTG 5 cut(s) 977, 1027, 1775, 2448, 3518
SmlI CTYRAG 3 cut(s) 323, 1744, 2446
SmoI CTYRAG 3 cut(s) 323, 1744, 2446
SphI GCATGC 1 cut(s) 2883
SseBI AGGCCT 1 cut(s) 1392
SsiI CCGC 7 cut(s) 930, 1248, 1741, 1788, 1999, 2002, 3033
SspI AATATT 3 cut(s) 1206, 1441, 2292
SspMI CTAG 7 cut(s) 1233, 1538, 1823, 2162, 2516, 2621, 3611
SstI GAGCTC 1 cut(s) 3029
StuI AGGCCT 1 cut(s) 1392
StyD4I CCNGG 5 cut(s) 168, 1401, 2121, 2552, 3003
StyI CCWWGG 5 cut(s) 312, 606, 1210, 2161, 3202
TaiI ACGT 1 cut(s) 333
TaqI TCGA 8 cut(s) 1280, 2447, 2646, 2902, 3248, 3673, 3688, 3804
TatI WGTACW 1 cut(s) 807
TauI GCSGC 4 cut(s) 1250, 2001, 2004, 3035
TfiI GAWTC 9 cut(s) 74, 164, 1130, 1215, 1670, 2270, 3074, 3287, 3641
TseFI GTSAC 1 cut(s) 2041
Tsp45I GTSAC 1 cut(s) 2041
TspGWI ACGGA 2 cut(s) 485, 2372
Van91I CCANNNNNTGG 2 cut(s) 612, 1322
VneI GTGCAC 2 cut(s) 2031, 2096
VpaK11BI GGWCC 1 cut(s) 1808
VspI ATTAAT 2 cut(s) 1347, 2288
XagI CCTNNNNNAGG 1 cut(s) 3288
XapI RAATTY 1 cut(s) 1629
XceI RCATGY 2 cut(s) 2883, 3842
XcmI CCANNNNNNNNNTGG 1 cut(s) 2716
XhoI CTCGAG 1 cut(s) 2446
XmaJI CCTAGG 1 cut(s) 2161
XmiI GTMKAC 1 cut(s) 3248
XmnI GAANNNNTTC 2 cut(s) 1140, 2269
XspI CTAG 7 cut(s) 1233, 1538, 1823, 2162, 2516, 2621, 3611
Zsp2I ATGCAT 1 cut(s) 2881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.