RLG00000021858

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000472
Physical Location & Seq
Forward (+)
78859204 .. 78867871
8668 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021858

Sequence Viewer

Length: 3723 bp
ATGCAAATCTCAGTGACTCGGAGCACTTCAGATGTCAGGTCCATGAAAGAGAATGATGACGATGAAGTTGAGCTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGTATTCAAACTTCACTCTTCGGTTGTAACAAGGAGGACGATGATCATGAAGATATCATGAAAGAAGTTGCTCGAAGGGAGAAGCAAGCTGGTATTGTCCCAGAACCAGACATTGACACTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAAATCTTTAATGACAGACTATATAATAAAGATCCTTGGGCTGGACATTTGTGCTGATACAATCGCAGGGGACGCAATGCAAAGAGGAATTTCGGGTGGTCAAAAGAAAAGGCTTACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTTATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACATTTCAAATTGTAACTTGTCTGCAGCAATTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACTCCAGAGACTTTTCATCTGTTTGATGACATTGTCTTGATGGCTGAAGGAAATGTTTTATACCATGGGCCAAGTGACAATGTTGTGGAGTTCTTTCAGAAATGTGGTTTTTGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCCTACAGTTATGTTAGTATTGATAAGTTCGTAAATATGTTTAAGGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAGCTTTGCAAGCCTTTTGATCAATCTGTGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGAGAAACTCATTTATTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAGTAACAATGACAATGTTTCTACGTACATGGATGAAAGTCGACGAGATCCATGCAAAGTACTACATGGGTTCTTTGTTTTATGCTCTACTTAGACTGCTATGCAATGGAACTGCAGAGGTATCAATGACTGCCTCTAGACTAGCTGTCTTCTATAAGCAAAGAGATATCTACTTCTACCCTGCATGGGCTTATTCGATTCCGGCTGCCATCCTGAAGATTCCATTTTCATTGCTAGATGCATTTCTTTGGACAGCCCTTACTTATTATGTGATTGGTTACAGTCCTGAACCCGAAAGGTTCTTCAGGCAATTTATTCTTCTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGATCTGTCAGTCTTTTATCTTTAATAGTAATGTTTCTATTTGGAGGCTTCATAATTCCAAAATCTTCTCTACCTCCTTGGTTGGAATGGGGATTTTGGGTTTCTCCGTTGGCATTTGCAGAAATAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTTACTATAGGCCAGCAAGCTTTAATTAACCGGGGTCTAAACTTCAGTGAATACTTCTATTGGATATCAATGGGAGCTTTACTTGGATTTTGGATGGTTTTCAACCTTGGGTTCACATGCGTACTCAGTTATTCAAAGGCTCCAGGGAGTTCTCGGACTATCATTTCTCATGAAAGATTCTCCCGTCTGAAAAATAAAGAAATTTTAGATAATTCCTGTCAAGAAAAAGAAGTAACTAGTGTAGACACTGACATTCTTACTTCAGAATCTACAAATGCAGGCATGGTGTTGCCGTTTGAGCCCATAACTATATCATTTGAGAAAGTGAAATACTATATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGTGCATTTAGACCTGGAATTCTCACAGCTTTGATGGGAGTTAGTGGAGCCGGAAAAACGACACTGATGGATGTTCTTTCTGGAAGAAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTTCAAGAAACATATGCAAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCTCCACAGCTTACATCAGTAGCATACTCAGCTTGGTTACGCTTGCCATCCCAGATTGACAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTACATCAACTGAACAGCGTAAAAGGCTAACAATTGCAGTGGAGCTTGTTTCAAATCCATCTGTTATATTCATGGACGAACCCACGTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTCATGCGAGTTGTGAAAAATATTGTCAGTACAAGGAGGACTGTTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCTTTCGATGAGCTTCTTTTGATGAAAAGAGGAGGACAAGTAATATACTGTGGAGAACTGGGTCAAGATTCGAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATTAAAGATAACTACAACCCAGCAACATGGATGTTAGAAGTCACGAGTCCTTCTGCAGAAGCCAAACTTGCCATAGATTTTGCTCAGCTTTATAGAGAATCACATTTATGCCAGAAGAACAATGACCTAGTTAGAGAACTCAGCTTTCCAGTAGAAGGCTCAAAGGAATTGAATTTTCCTACTCGCTTCCCAAAAAATGGATGGGAGCAATTTAAAGCGTGTCTGTGGAAGCGACATCTCTCCTACTGGAGAAATCCAAAATATAACCTGGGGCGATTGTTAATCACTGCTGCATCCTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAAAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATAGGAATTGGTAACAGCTCCTCTGTTTTACCATTTGTCGCTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCACGGGCATATTCTTTATCACAGGTGATCATTGAACTTCCCTATATTTTCCTTCAAGCAGTTCTGTTTTCGACCATTACATATCCAACCATTGGTTTCCACTGGTCACTTTACAAAGTATTCTGGTATGTGTATGCTATGTTTTGTACGCTGCTCTACTTCACTTACTTCGGTATATTGGTTGCTTCTGTGACCCCAACTTTCCAAGTAGCTTCAGTATTATCAAGTTTCTGCTACACAATGTTGAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTCTCCTTTATCCTGGTCCTTGAAGGGTATTCTCACTTCGCAGTATGGGGACCTAAACAAGGAAATAGTACTCCGCGGGGAGGAAAAGACTATCAGTGCCTTCCTAGGAAGCATTTATGGGTATAAATACGATGATCTAGGAATTGTAGGAATTGTTCTTCTTGCATATCCACTAGTTTTCGCATTTGCGTTTGCACTTGCTACAGAAAAACTAAACTTCCAGAGGAGGCTATGGCTATTTACTGATTTACTTCCCAGGTATGAGGTTGAAGAAGACGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1241

Amino Acids

141.04

Weight (kDa)

6.57

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 298 - 509 7.4e-43 ABC-2 type transporter
PDR_assoc PF08370 514 - 576 4.1e-19 Plant PDR ABC transporter associated
ABC_tran PF00005 653 - 802 9.2e-17 ABC transporter
ABC2_membrane PF01061 947 - 1161 8.9e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
Acc65I GGTACC 2 cut(s) 720, 2100
AccB1I GGYRCC 2 cut(s) 720, 2100
AccB7I CCANNNNNTGG 3 cut(s) 688, 2831, 3215
AccI GTMKAC 3 cut(s) 1026, 1806, 3093
AccII CGCG 1 cut(s) 3513
AciI CCGC 2 cut(s) 3511, 3513
AclWI GGATC 5 cut(s) 289, 711, 1027, 1390, 3016
AcsI RAATTY 5 cut(s) 351, 1523, 1764, 1989, 2806
AcuI CTGAAG 9 cut(s) 12, 512, 600, 1220, 1273, 1591, 1809, 2980, 3321
AhdI GACNNNNNGTC 1 cut(s) 1130
AhlI ACTAGT 3 cut(s) 985, 1799, 3610
AjiI CACGTC 1 cut(s) 2403
AjnI CCWGG 6 cut(s) 1705, 1984, 2305, 2901, 3449, 3692
Alw21I GWGCWC 2 cut(s) 26, 2950
Alw26I GTCTC 2 cut(s) 536, 2076
AlwI GGATC 5 cut(s) 289, 711, 1027, 1390, 3016
AlwNI CAGNNNCTG 2 cut(s) 1385, 1918
Ama87I CYCGRG 1 cut(s) 3379
AoxI GGCC 5 cut(s) 240, 400, 439, 602, 1573
ApeKI GCWGC 8 cut(s) 73, 83, 481, 1190, 2423, 2426, 2924, 3274
ApoI RAATTY 5 cut(s) 351, 1523, 1764, 1989, 2806
Asp700I GAANNNNTTC 5 cut(s) 114, 921, 1369, 2256, 3374
Asp718I GGTACC 2 cut(s) 720, 2100
AspA2I CCTAGG 1 cut(s) 3541
AspLEI GCGC 1 cut(s) 3084
AspS9I GGNCC 6 cut(s) 39, 401, 602, 1360, 3453, 3487
AsuC2I CCSGG 1 cut(s) 1595
AsuHPI GGTGA 3 cut(s) 398, 2993, 3160
AvaI CYCGRG 1 cut(s) 3379
AvaII GGWCC 4 cut(s) 39, 1360, 3453, 3487
AvrII CCTAGG 1 cut(s) 3541
BanI GGYRCC 2 cut(s) 720, 2100
BanII GRGCYC 1 cut(s) 1866
BarI GAAGNNNNNNTAC 4 cut(s) 106, 138, 3457, 3489
BauI CACGAG 2 cut(s) 1313, 2677
BbsI GAAGAC 2 cut(s) 1126, 3717
Bbv12I GWGCWC 2 cut(s) 26, 2950
BbvI GCAGC 8 cut(s) 60, 70, 493, 1177, 2413, 2435, 2911, 3261
BccI CCATC 8 cut(s) 568, 1202, 1651, 1999, 2032, 2218, 2383, 2829
BceAI ACGGC 1 cut(s) 1840
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 6 cut(s) 1707, 1986, 2307, 2903, 3451, 3694
BclI TGATCA 3 cut(s) 154, 829, 3150
BcnI CCSGG 1 cut(s) 1595
BcoDI GTCTC 2 cut(s) 536, 2076
BcuI ACTAGT 3 cut(s) 985, 1799, 3610
BfmI CTRYAG 8 cut(s) 74, 479, 739, 1098, 1569, 1949, 2688, 3639
BisI GCNGC 8 cut(s) 74, 84, 482, 1191, 2424, 2427, 2925, 3275
BlnI CCTAGG 1 cut(s) 3541
BlpI GCTNAGC 1 cut(s) 2718
BlsI GCNGC 8 cut(s) 75, 85, 483, 1192, 2425, 2428, 2926, 3276
BmcAI AGTACT 4 cut(s) 716, 1046, 2256, 3507
Bme1390I CCNGG 7 cut(s) 1595, 1707, 1986, 2307, 2903, 3451, 3694
Bme18I GGWCC 4 cut(s) 39, 1360, 3453, 3487
BmeRI GACNNNNNGTC 1 cut(s) 1130
BmeT110I CYCGRG 1 cut(s) 3379
BmgBI CACGTC 1 cut(s) 2403
BmgT120I GGNCC 6 cut(s) 39, 401, 602, 1360, 3453, 3487
BmiI GGNNCC 6 cut(s) 722, 1704, 2020, 2102, 2628, 3488
BmrFI CCNGG 7 cut(s) 1595, 1707, 1986, 2307, 2903, 3451, 3694
BmrI ACTGGG 1 cut(s) 2585
BmsI GCATC 5 cut(s) 1213, 1327, 1361, 2404, 2936
BmuI ACTGGG 1 cut(s) 2585
BpiI GAAGAC 2 cut(s) 1126, 3717
BpmI CTGGAG 3 cut(s) 522, 1689, 2902
Bpu1102I GCTNAGC 1 cut(s) 2718
BpuMI CCSGG 1 cut(s) 1595
BsaAI YACGTR 1 cut(s) 1010
BsaXI ACNNNNNCTCC 2 cut(s) 2541, 2571
Bse1I ACTGG 8 cut(s) 722, 1975, 2068, 2580, 2783, 2885, 3230, 3437
Bse3DI GCAATG 5 cut(s) 345, 978, 1096, 1214, 3091
BseBI CCWGG 6 cut(s) 1707, 1986, 2307, 2903, 3451, 3694
BseMI GCAATG 5 cut(s) 345, 978, 1096, 1214, 3091
BseMII CTCAG 9 cut(s) 24, 869, 1702, 1910, 2205, 2229, 2732, 2788, 3069
BseNI ACTGG 8 cut(s) 722, 1975, 2068, 2580, 2783, 2885, 3230, 3437
BseRI GAGGAG 5 cut(s) 824, 2562, 3043, 3112, 3676
BseXI GCAGC 8 cut(s) 60, 70, 493, 1177, 2413, 2435, 2911, 3261
BseYI CCCAGC 2 cut(s) 403, 2653
Bsh1236I CGCG 1 cut(s) 3513
BshFI GGCC 5 cut(s) 242, 402, 441, 604, 1575
BshNI GGYRCC 2 cut(s) 720, 2100
BsiHKAI GWGCWC 2 cut(s) 26, 2950
BsiHKCI CYCGRG 1 cut(s) 3379
BsiSI CCGG 3 cut(s) 1187, 1594, 2022
BslFI GGGAC 3 cut(s) 194, 347, 3500
BsmAI GTCTC 2 cut(s) 536, 2076
BsmFI GGGAC 3 cut(s) 194, 347, 3500
BsmI GAATGC 1 cut(s) 3000
BsnI GGCC 5 cut(s) 242, 402, 441, 604, 1575
BsoBI CYCGRG 1 cut(s) 3379
Bsp1286I GDGCHC 3 cut(s) 26, 1866, 2950
Bsp143I GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
Bsp1720I GCTNAGC 1 cut(s) 2718
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 2 cut(s) 3511, 3513
BspANI GGCC 5 cut(s) 242, 402, 441, 604, 1575
BspCNI CTCAG 9 cut(s) 23, 870, 1701, 1911, 2204, 2230, 2731, 2787, 3070
BspFNI CGCG 1 cut(s) 3513
BspHI TCATGA 4 cut(s) 157, 168, 927, 1732
BspLI GGNNCC 6 cut(s) 722, 1704, 2020, 2102, 2628, 3488
BspMAI CTGCAG 4 cut(s) 78, 483, 1102, 2692
BspPI GGATC 5 cut(s) 289, 711, 1027, 1390, 3016
BspT107I GGYRCC 2 cut(s) 720, 2100
BsrDI GCAATG 5 cut(s) 345, 978, 1096, 1214, 3091
BsrI ACTGG 8 cut(s) 722, 1975, 2068, 2580, 2783, 2885, 3230, 3437
BssMI GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
BssNAI GTATAC 1 cut(s) 3094
BssSI CACGAG 2 cut(s) 1313, 2677
BssT1I CCWWGG 7 cut(s) 298, 598, 1356, 1457, 1535, 1669, 3541
Bst1107I GTATAC 1 cut(s) 3094
Bst2BI CACGAG 2 cut(s) 1313, 2677
Bst2UI CCWGG 6 cut(s) 1707, 1986, 2307, 2903, 3451, 3694
Bst4CI ACNGT 4 cut(s) 743, 1268, 2476, 2567
Bst6I CTCTTC 3 cut(s) 134, 801, 926
BstBAI YACGTR 1 cut(s) 1010
BstC8I GCNNGC 8 cut(s) 198, 821, 904, 1577, 1581, 1843, 2147, 2207
BstDSI CCRYGG 2 cut(s) 598, 3511
BstENI CCTNNNNNAGG 2 cut(s) 683, 3494
BstFNI CGCG 1 cut(s) 3513
BstHHI GCGC 1 cut(s) 3084
BstKTI GATC 9 cut(s) 157, 297, 706, 832, 1035, 1385, 3011, 3153, 3574
BstMAI GTCTC 2 cut(s) 536, 2076
BstMBI GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
BstMWI GCNNNNNNNGC 8 cut(s) 335, 447, 820, 1861, 2192, 2341, 2423, 2702
BstNI CCWGG 6 cut(s) 1707, 1986, 2307, 2903, 3451, 3694
BstNSI RCATGY 3 cut(s) 854, 906, 1683
BstSCI CCNGG 7 cut(s) 1593, 1705, 1984, 2305, 2901, 3449, 3692
BstSFI CTRYAG 8 cut(s) 74, 479, 739, 1098, 1569, 1949, 2688, 3639
BstSNI TACGTA 1 cut(s) 1010
BstUI CGCG 1 cut(s) 3513
BstV1I GCAGC 8 cut(s) 60, 70, 493, 1177, 2413, 2435, 2911, 3261
BstV2I GAAGAC 2 cut(s) 1126, 3717
BstX2I RGATCY 3 cut(s) 294, 1032, 1382
BstXI CCANNNNNNTGG 2 cut(s) 514, 2661
BstYI RGATCY 3 cut(s) 294, 1032, 1382
BstZ17I GTATAC 1 cut(s) 3094
BsuRI GGCC 5 cut(s) 242, 402, 441, 604, 1575
BtgI CCRYGG 2 cut(s) 598, 3511
BtrI CACGTC 1 cut(s) 2403
BtsI GCAGTG 3 cut(s) 83, 2361, 2919
Cac8I GCNNGC 8 cut(s) 198, 821, 904, 1577, 1581, 1843, 2147, 2207
CaiI CAGNNNCTG 2 cut(s) 1385, 1918
CciI TCATGA 4 cut(s) 157, 168, 927, 1732
CfoI GCGC 1 cut(s) 3084
Cfr13I GGNCC 6 cut(s) 39, 401, 602, 1360, 3453, 3487
Cfr42I CCGCGG 1 cut(s) 3514
CseI GACGC 1 cut(s) 344
CsiI ACCWGGT 1 cut(s) 2305
CspCI CAANNNNNGTGG 2 cut(s) 2337, 2372
DpnI GATC 9 cut(s) 156, 296, 705, 831, 1034, 1384, 3010, 3152, 3573
DpnII GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
DraI TTTAAA 1 cut(s) 2848
DrdI GACNNNNNNGTC 1 cut(s) 788
DriI GACNNNNNGTC 1 cut(s) 1130
DseDI GACNNNNNNGTC 1 cut(s) 788
Eam1104I CTCTTC 3 cut(s) 134, 801, 926
Eam1105I GACNNNNNGTC 1 cut(s) 1130
EarI CTCTTC 3 cut(s) 134, 801, 926
Eco105I TACGTA 1 cut(s) 1010
Eco130I CCWWGG 7 cut(s) 298, 598, 1356, 1457, 1535, 1669, 3541
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 1866
Eco32I GATATC 4 cut(s) 166, 432, 1153, 1629
Eco47I GGWCC 4 cut(s) 39, 1360, 3453, 3487
Eco57I CTGAAG 9 cut(s) 12, 512, 600, 1220, 1273, 1591, 1809, 2980, 3321
Eco88I CYCGRG 1 cut(s) 3379
EcoNI CCTNNNNNAGG 2 cut(s) 683, 3494
EcoO109I RGGNCCY 1 cut(s) 3487
EcoRI GAATTC 1 cut(s) 1989
EcoRII CCWGG 6 cut(s) 1705, 1984, 2305, 2901, 3449, 3692
EcoRV GATATC 4 cut(s) 166, 432, 1153, 1629
EcoT14I CCWWGG 7 cut(s) 298, 598, 1356, 1457, 1535, 1669, 3541
EcoT22I ATGCAT 2 cut(s) 1228, 3035
EcoT38I GRGCYC 1 cut(s) 1866
ErhI CCWWGG 7 cut(s) 298, 598, 1356, 1457, 1535, 1669, 3541
FalI AAGNNNNNCTT 8 cut(s) 798, 830, 891, 923, 2241, 2273, 2685, 2717
FaqI GGGAC 3 cut(s) 194, 347, 3500
FauI CCCGC 1 cut(s) 3506
FauNDI CATATG 1 cut(s) 2122
FbaI TGATCA 3 cut(s) 154, 829, 3150
FblI GTMKAC 3 cut(s) 1026, 1806, 3093
Fnu4HI GCNGC 8 cut(s) 74, 84, 482, 1191, 2424, 2427, 2925, 3275
FriOI GRGCYC 1 cut(s) 1866
Fsp4HI GCNGC 8 cut(s) 74, 84, 482, 1191, 2424, 2427, 2925, 3275
GlaI GCGC 1 cut(s) 3083
GluI GCNGC 8 cut(s) 74, 84, 482, 1191, 2424, 2427, 2925, 3275
GsaI CCCAGC 2 cut(s) 407, 2657
GsuI CTGGAG 3 cut(s) 522, 1689, 2902
HaeIII GGCC 5 cut(s) 242, 402, 441, 604, 1575
HapII CCGG 3 cut(s) 1187, 1594, 2022
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 3084
Hin6I GCGC 1 cut(s) 3082
HinP1I GCGC 1 cut(s) 3082
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HindIII AAGCTT 4 cut(s) 800, 1581, 2517, 2594
HpaII CCGG 3 cut(s) 1187, 1594, 2022
HphI GGTGA 3 cut(s) 398, 2993, 3160
Hpy166II GTNNAC 5 cut(s) 1027, 1677, 1807, 2984, 3094
Hpy8I GTNNAC 5 cut(s) 1027, 1677, 1807, 2984, 3094
Hpy99I CGWCG 1 cut(s) 1031
HpyCH4III ACNGT 4 cut(s) 743, 1268, 2476, 2567
HpyCH4IV ACGT 3 cut(s) 112, 1009, 2402
HpyF10VI GCNNNNNNNGC 8 cut(s) 335, 447, 820, 1861, 2192, 2341, 2423, 2702
HpySE526I ACGT 3 cut(s) 112, 1009, 2402
HspAI GCGC 1 cut(s) 3082
KpnI GGTACC 2 cut(s) 724, 2104
Ksp22I TGATCA 3 cut(s) 154, 829, 3150
KspI CCGCGG 1 cut(s) 3514
Kzo9I GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
Lsp1109I GCAGC 8 cut(s) 60, 70, 493, 1177, 2413, 2435, 2911, 3261
LweI GCATC 5 cut(s) 1213, 1327, 1361, 2404, 2936
MabI ACCWGGT 1 cut(s) 2305
MaeII ACGT 3 cut(s) 112, 1009, 2402
MalI GATC 9 cut(s) 156, 296, 705, 831, 1034, 1384, 3010, 3152, 3573
MboI GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
MfeI CAATTG 3 cut(s) 249, 485, 2349
MflI RGATCY 3 cut(s) 294, 1032, 1382
MhlI GDGCHC 3 cut(s) 26, 1866, 2950
MlyI GAGTC 3 cut(s) 10, 484, 2689
MmeI TCCRAC 3 cut(s) 772, 1443, 3233
Mph1103I ATGCAT 2 cut(s) 1228, 3035
MroXI GAANNNNTTC 5 cut(s) 114, 921, 1369, 2256, 3374
MseI TTAA 8 cut(s) 272, 777, 1403, 1586, 1590, 2637, 2847, 2915
MslI CAYNNNNRTG 3 cut(s) 233, 849, 2740
MspA1I CMGCKG 2 cut(s) 2426, 3513
MspI CCGG 3 cut(s) 1187, 1594, 2022
MspR9I CCNGG 7 cut(s) 1595, 1707, 1986, 2307, 2903, 3451, 3694
MunI CAATTG 3 cut(s) 249, 485, 2349
Mva1269I GAATGC 1 cut(s) 3000
MvaI CCWGG 6 cut(s) 1707, 1986, 2307, 2903, 3451, 3694
MvnI CGCG 1 cut(s) 3513
MwoI GCNNNNNNNGC 8 cut(s) 335, 447, 820, 1861, 2192, 2341, 2423, 2702
NciI CCSGG 1 cut(s) 1595
NcoI CCATGG 1 cut(s) 598
NdeI CATATG 1 cut(s) 2122
NdeII GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
NlaIV GGNNCC 6 cut(s) 722, 1704, 2020, 2102, 2628, 3488
NmuCI GTSAC 6 cut(s) 13, 608, 2153, 2674, 3228, 3313
NsiI ATGCAT 2 cut(s) 1228, 3035
NspI RCATGY 3 cut(s) 854, 906, 1683
PacI TTAATTAA 1 cut(s) 1590
PaeI GCATGC 1 cut(s) 906
PagI TCATGA 4 cut(s) 157, 168, 927, 1732
PceI AGGCCT 1 cut(s) 441
PctI GAATGC 1 cut(s) 3000
PdmI GAANNNNTTC 5 cut(s) 114, 921, 1369, 2256, 3374
PfeI GAWTC 9 cut(s) 503, 1183, 1204, 1740, 1829, 2585, 2732, 3370, 3384
PflFI GACNNNGTC 1 cut(s) 566
PflMI CCANNNNNTGG 3 cut(s) 688, 2831, 3215
PkrI GCNGC 8 cut(s) 75, 85, 483, 1192, 2425, 2428, 2926, 3276
PleI GAGTC 3 cut(s) 10, 484, 2688
PpsI GAGTC 3 cut(s) 10, 484, 2688
Ppu21I YACGTR 1 cut(s) 1010
PpuMI RGGWCCY 1 cut(s) 3487
Psp5II RGGWCCY 1 cut(s) 3487
Psp6I CCWGG 6 cut(s) 1705, 1984, 2305, 2901, 3449, 3692
PspFI CCCAGC 2 cut(s) 403, 2653
PspGI CCWGG 6 cut(s) 1705, 1984, 2305, 2901, 3449, 3692
PspN4I GGNNCC 6 cut(s) 722, 1704, 2020, 2102, 2628, 3488
PspPI GGNCC 6 cut(s) 39, 401, 602, 1360, 3453, 3487
PspPPI RGGWCCY 1 cut(s) 3487
PsrI GAACNNNNNNTAC 2 cut(s) 3576, 3608
PstI CTGCAG 4 cut(s) 78, 483, 1102, 2692
PstNI CAGNNNCTG 2 cut(s) 1385, 1918
PsuI RGATCY 3 cut(s) 294, 1032, 1382
PsyI GACNNNGTC 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 2426
RseI CAYNNNNRTG 3 cut(s) 233, 849, 2740
SacII CCGCGG 1 cut(s) 3514
SalI GTCGAC 1 cut(s) 1025
SaqAI TTAA 8 cut(s) 272, 777, 1403, 1586, 1590, 2637, 2847, 2915
SatI GCNGC 8 cut(s) 74, 84, 482, 1191, 2424, 2427, 2925, 3275
Sau3AI GATC 9 cut(s) 154, 294, 703, 829, 1032, 1382, 3008, 3150, 3571
Sau96I GGNCC 6 cut(s) 39, 401, 602, 1360, 3453, 3487
ScaI AGTACT 4 cut(s) 716, 1046, 2256, 3507
SchI GAGTC 3 cut(s) 10, 484, 2689
ScrFI CCNGG 7 cut(s) 1595, 1707, 1986, 2307, 2903, 3451, 3694
SduI GDGCHC 3 cut(s) 26, 1866, 2950
SexAI ACCWGGT 1 cut(s) 2305
SfaNI GCATC 5 cut(s) 1213, 1327, 1361, 2404, 2936
SfcI CTRYAG 8 cut(s) 74, 479, 739, 1098, 1569, 1949, 2688, 3639
Sfr303I CCGCGG 1 cut(s) 3514
SgrBI CCGCGG 1 cut(s) 3514
SinI GGWCC 4 cut(s) 39, 1360, 3453, 3487
SmiMI CAYNNNNRTG 3 cut(s) 233, 849, 2740
SnaBI TACGTA 1 cut(s) 1010
SpeI ACTAGT 3 cut(s) 985, 1799, 3610
SphI GCATGC 1 cut(s) 906
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 2 cut(s) 3511, 3513
SspI AATATT 2 cut(s) 2455, 3015
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 7 cut(s) 1593, 1705, 1984, 2305, 2901, 3449, 3692
StyI CCWWGG 7 cut(s) 298, 598, 1356, 1457, 1535, 1669, 3541
TaaI ACNGT 4 cut(s) 743, 1268, 2476, 2567
TaiI ACGT 3 cut(s) 115, 1012, 2405
TaqI TCGA 7 cut(s) 184, 1026, 1181, 1945, 2523, 2588, 3194
TatI WGTACW 6 cut(s) 714, 1044, 2254, 2462, 3117, 3505
TfiI GAWTC 9 cut(s) 503, 1183, 1204, 1740, 1829, 2585, 2732, 3370, 3384
Tru1I TTAA 8 cut(s) 272, 777, 1403, 1586, 1590, 2637, 2847, 2915
Tru9I TTAA 8 cut(s) 272, 777, 1403, 1586, 1590, 2637, 2847, 2915
TseFI GTSAC 6 cut(s) 13, 608, 2153, 2674, 3228, 3313
TseI GCWGC 8 cut(s) 73, 83, 481, 1190, 2423, 2426, 2924, 3274
Tsp45I GTSAC 6 cut(s) 13, 608, 2153, 2674, 3228, 3313
TspGWI ACGGA 1 cut(s) 1476
Tth111I GACNNNGTC 1 cut(s) 566
Van91I CCANNNNNTGG 3 cut(s) 688, 2831, 3215
VpaK11BI GGWCC 4 cut(s) 39, 1360, 3453, 3487
XagI CCTNNNNNAGG 2 cut(s) 683, 3494
XapI RAATTY 5 cut(s) 351, 1523, 1764, 1989, 2806
XbaI TCTAGA 2 cut(s) 911, 1121
XceI RCATGY 3 cut(s) 854, 906, 1683
XcmI CCANNNNNNNNNTGG 1 cut(s) 2832
XmaJI CCTAGG 1 cut(s) 3541
XmiI GTMKAC 3 cut(s) 1026, 1806, 3093
XmnI GAANNNNTTC 5 cut(s) 114, 921, 1369, 2256, 3374
ZrmI AGTACT 4 cut(s) 716, 1046, 2256, 3507
Zsp2I ATGCAT 2 cut(s) 1228, 3035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.