Rmu_sc0022554.1_g000001

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022554.1
OG0000472
Physical Location & Seq
Forward (+)
541 .. 8149
7609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022554.1_g000001.1.cds

Sequence Viewer

Length: 4149 bp
atggatttggctgcagagataggaagaagtgtgaggacctctttccaccagcatgcatcaagtttcaggatcacttcagatgtcagatccatgaaagagaatgatgacgatgaggttgagttgcagtgggctgccattgaaagattgcccacatttgaacgcattcaaacgtcactctccagctatgacaaagaggaagatgatcatgaaggtaagactaagagggtagttgatgttacaaagctaggagccctggaacgtcgtgtgttcattgattatcttctcaaggacatagaaggagataatcaacgcctcttacagaaactcaaagaaagaatagacagagtgggattgcaattaccgactgtggaagtacgataccaaaatttgtttgtagaagcagaatgtgaagtagttcaaggaaagccgctcccaacactatggaacacgctcaaaagctttctctctgtgatgacacagatatttgggtgcaagtctcaagcatacaaactagaaattctaaaacaagtcagtggcatcatcaagccttcaaggatgactctattacttggtcctccaagctgtgggaaaaccaccttattacaggcacttgcaggaaaacttaaccactctctcaaggttcaaggagaaataacttacaatggttataagatgaacgagtttgttcctcagaagacatcagcttacataagtcaatatgacttgcatatttctgaaatgactgtgagggaagcactggatttctcatctcgctgccagggtattggaagcagagccgatattatgaaagaagttgctagaagagagaaccaagctggtattgtcccagaaccagacattgacgcttatatgaaggccatttcaattgaagggttgaaaaaatctttaatgacagactatataataaagatccttgggctggatatttgtgctgatacaatcgtaggggatgcaatgcaaagaggaatctccggcggtcaaaagaaaaggctgacaacaggtgagatgatgattggcccagcaagagctttcttcatggatgagatatcaacaggcctagacagctccactacttttcaaattgtaacttgtctgcagcagttgactcatgtaacagaatccaccattttggtttcacttcttcagccaacaccagagacttttcatctgtttgatgatattatcttgatggctgaaggaaaagttgtataccatggacctagtgacaatgttttggagttctttcaggagtgtggtttccgtagcccaccacgaaaaggcatttctgacttcctccaggaggtggtttctcaaaaggatcaagcaaagtactggtcccataaagaccaaccctataggtatgtcagtgttgataagttcgtaaatatgtttaaagacttccatgtcggaaagaagcttgaagaggaactttgcaagcctttcgatcaatctgagtgccataaacatgctttgtcattcaacatttactcactgagaaaatgggaactattcaaagcatgcctttctagagaatggattctcatgaagcgaaactcatttgttcatgtattcaaatcagcacagcttgtggtcattgcactaataacaatgacaatcttttcacgtacatggatgaaaatcgacgagacccatgcaaagtactacatgagttctttgttttatgctctacttagactgctctgcattggaattgcagagatatcaatgactgcctctagacttgcagtcttctataagcaaagagatttctacttctatcctgcatgggcttattctcttccagctgccattctaaagattccattctcattgctagatgcatttctttggacagccctcacttattatgttattggttacagtcctgaacctgaaaggttcttcaggcaatttattcttttgttcctcgtgcatcaagtagcaatatcactatttcgtttgattgcatccttggtccgaaatccttctgttgcaggaactgtcgcttctctacctgcttggttggcatggggattttgggtttctccattggcctttgcagaactaggtgcttcaataaatgaatttcatgctccaaggtggcaaaaggttttatcttccaatgtcactataggccagcaagctctaattaaccatggtagttctcggactatcatctctcatgaaagattctcccgtctgaagaaaaaggatactttaaacaattcccatcaagaacacgaattaacttgtggagatactgacataacttcttcagaatctacaaatgtaggcatggtgttaccttttgagcccataagtatatcatttgagaaactgcattactttattgatacaccccagaaactgagagagcaaggtttcccaccaaatcgactacagcttcttcaagatataactggctcatttagacctgcgattctcacagctttgatgggagttagtggagctggaaaaacgacactgatggatgttctttcaggaagaaaaactggtggaattattgaaggggacattagaattggagggttcccaaaagtccaagaaacatatgccagaatatcggggtattgcgagcaaagtgacatacattctccagagcttacagtagaagaatcagtcgcatactcagcctggttacgcttgccatcccagattgatagaaatactagagctgagtttgtgcaagaagtacttcaaatgatagagcttgatgaaatcaaagacgagttagttggcataccaggtggtagtggtatatcgactgaacagcgtaaaaggttaacaatagcagtagagcttgtttcaaatccatcaataatattcatggatgaacccacgtctggtttagatgcaagagcagctgcaataattatgcgagttgtgaaaaatatcgtcagtacagggaggactattgtatgcactattcatcagccaagtattgacatatttgaagcattcgacgagcttattttgatgaaaagaggaggacaaataatatactgtggagagctgggtcaagattcaagtaagcttatccaatactttgagggtatttctggggttccaaaaatcaaagataattacaacccagcaacatggatgttagaagtcacaagtccttctgcagaagccaaactggccttagattttgctcagctttatagagaatcacatctatgccagaagaacaatgatctagttagagaactcagcttaccagtacaaggctcaaaggaattgtattttcctactcacttcccacaaaatggatgggagcaatttaaagcatgtctctggaagcgacatctctcctattggagaaatccaagatataatctggggcgattggcaattactgctgcatcttctttgatatttggagcacttctttggcagaaaggacagagaataaatggtgaacaggagttcttcagcattctaggatcaatatttattttacaacaatgcatgggaattggtaactgttcctctgttttaccatttgtcacttctgagcgcaatgttgtataccgagaaaggtttgctggaatgtactcctcatgggcatattctttttcacaggtgatcattgaacttccgtatatattacttcaggcagttatcttttcgaccattacatatccaaccattggtttccactggtcactttacaaagtattctggtatgtgtacgctatgttttgtacactgctctatttcacttacttcggtatattggttgcttctgcgaccccaactttccaagtggcttcagtattagcaagtttctgttacaccatgttcaatctgttctcgggattcctaatacctcaaccaaacattcctaaatggtgggtttggggctactggatttgccctttatcgtggtccttaaaaggtattctcatttcacagtacggagatttaaacaaggaaattgtactccgcggggaagaaaagactatcagttccttcttagaaagcatctatggatacagctatgatgatctaggaattgtaggaactgttcttcttgcatatccactagttttcgcatttgcgtttgcacttgctactgaaaaactcaactttcagaggaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1382

Amino Acids

156.97

Weight (kDa)

6.85

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AasI GACNNNNNNGTC 1 cut(s) 1424
Acc36I ACCTGC 2 cut(s) 2044, 2464
AccB7I CCANNNNNTGG 4 cut(s) 584, 1324, 3311, 3695
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 1230, 3573
AccII CGCG 1 cut(s) 3993
AciI CCGC 4 cut(s) 428, 996, 3991, 3993
AclWI GGATC 5 cut(s) 77, 81, 925, 1347, 3496
AcsI RAATTY 3 cut(s) 385, 516, 2105
AcuI CTGAAG 9 cut(s) 60, 1148, 1236, 1909, 2243, 2280, 3460, 3641, 3801
AfiI CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 2885, 3269, 3311, 3695
AhdI GACNNNNNGTC 1 cut(s) 1766
AhlI ACTAGT 1 cut(s) 4090
AjiI CACGTC 1 cut(s) 2883
AjnI CCWGG 5 cut(s) 252, 777, 1317, 2675, 2785
Alw21I GWGCWC 1 cut(s) 3430
Alw26I GTCTC 4 cut(s) 501, 1172, 1661, 3341
AlwI GGATC 5 cut(s) 77, 81, 925, 1347, 3496
AlwNI CAGNNNCTG 2 cut(s) 2021, 2389
Ama87I CYCGRG 1 cut(s) 3859
AoxI GGCC 6 cut(s) 876, 1036, 1075, 2073, 2155, 3183
ApeKI GCWGC 8 cut(s) 11, 131, 774, 1117, 1826, 2903, 2906, 3404
ApoI RAATTY 3 cut(s) 385, 516, 2105
ArsI GACNNNNNNTTYG 2 cut(s) 1340, 1372
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2736
AspLEI GCGC 1 cut(s) 3564
AspS9I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 3933
AsuHPI GGTGA 3 cut(s) 1034, 3473, 3640
AvaI CYCGRG 1 cut(s) 3859
AvaII GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 3933
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanII GRGCYC 2 cut(s) 253, 2337
BauI CACGAG 1 cut(s) 1949
BbsI GAAGAC 2 cut(s) 701, 1762
Bbv12I GWGCWC 1 cut(s) 3430
BbvI GCAGC 7 cut(s) 118, 761, 1129, 1813, 2893, 2915, 3391
BccI CCATC 7 cut(s) 1204, 2259, 2470, 2503, 2698, 2863, 3309
BcgI CGANNNNNNTGC 4 cut(s) 1444, 1478, 1655, 1689
BciT130I CCWGG 5 cut(s) 254, 779, 1319, 2677, 2787
BciVI GTATCC 2 cut(s) 2227, 4031
BclI TGATCA 2 cut(s) 202, 3630
BcoDI GTCTC 4 cut(s) 501, 1172, 1661, 3341
BcuI ACTAGT 1 cut(s) 4090
BfmI CTRYAG 6 cut(s) 12, 1115, 1375, 2151, 2420, 3168
BfuAI ACCTGC 2 cut(s) 2044, 2464
BfuI GTATCC 2 cut(s) 2227, 4031
BglI GCCNNNNNGGC 1 cut(s) 3182
BisI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 2904, 2907, 3405
BlpI GCTNAGC 1 cut(s) 3198
BlsI GCNGC 9 cut(s) 13, 133, 429, 776, 1119, 1828, 2905, 2908, 3406
BmcAI AGTACT 3 cut(s) 1352, 1682, 2736
Bme1390I CCNGG 5 cut(s) 254, 779, 1319, 2677, 2787
Bme18I GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 3933
BmeRI GACNNNNNGTC 1 cut(s) 1766
BmeT110I CYCGRG 1 cut(s) 3859
BmgBI CACGTC 1 cut(s) 2883
BmgT120I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 3933
BmiI GGNNCC 4 cut(s) 250, 1358, 2573, 3108
BmrFI CCNGG 5 cut(s) 254, 779, 1319, 2677, 2787
BmsI GCATC 9 cut(s) 65, 546, 961, 1849, 1963, 1997, 2884, 3416, 4038
BpiI GAAGAC 2 cut(s) 701, 1762
BpmI CTGGAG 3 cut(s) 163, 1301, 2622
Bpu1102I GCTNAGC 1 cut(s) 3198
BpuEI CTTGAG 3 cut(s) 269, 483, 620
BsaAI YACGTR 1 cut(s) 1646
BsaBI GATNNNNATC 1 cut(s) 1658
BsaI GGTCTC 1 cut(s) 1661
BsaJI CCNNGG 8 cut(s) 252, 778, 934, 1234, 1992, 2117, 2176, 3991
Bsc4I CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 2885, 3269, 3311, 3695
Bse1I ACTGG 8 cut(s) 762, 1358, 2446, 2539, 3186, 3263, 3710, 3917
Bse3DI GCAATG 4 cut(s) 981, 1614, 1850, 3571
Bse8I GATNNNNATC 1 cut(s) 1658
BseBI CCWGG 5 cut(s) 254, 779, 1319, 2677, 2787
BseDI CCNNGG 8 cut(s) 252, 778, 934, 1234, 1992, 2117, 2176, 3991
BseJI GATNNNNATC 1 cut(s) 1658
BseLI CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 2885, 3269, 3311, 3695
BseMI GCAATG 4 cut(s) 981, 1614, 1850, 3571
BseMII CTCAG 9 cut(s) 704, 1464, 1505, 2381, 2685, 2709, 3212, 3268, 3549
BseNI ACTGG 8 cut(s) 762, 1358, 2446, 2539, 3186, 3263, 3710, 3917
BseRI GAGGAG 2 cut(s) 3042, 3592
BseXI GCAGC 7 cut(s) 118, 761, 1129, 1813, 2893, 2915, 3391
BseYI CCCAGC 3 cut(s) 1039, 3055, 3133
Bsh1236I CGCG 1 cut(s) 3993
BshFI GGCC 6 cut(s) 878, 1038, 1077, 2075, 2157, 3185
BsiHKAI GWGCWC 1 cut(s) 3430
BsiHKCI CYCGRG 1 cut(s) 3859
BsiSI CCGG 1 cut(s) 993
BslFI GGGAC 3 cut(s) 830, 1342, 2567
BslI CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 2885, 3269, 3311, 3695
BsmAI GTCTC 4 cut(s) 501, 1172, 1661, 3341
BsmFI GGGAC 3 cut(s) 830, 1342, 2567
BsmI GAATGC 3 cut(s) 162, 2999, 3480
BsnI GGCC 6 cut(s) 878, 1038, 1077, 2075, 2157, 3185
Bso31I GGTCTC 1 cut(s) 1661
BsoBI CYCGRG 1 cut(s) 3859
Bsp1286I GDGCHC 3 cut(s) 253, 2337, 3430
Bsp1407I TGTACA 1 cut(s) 3749
Bsp1720I GCTNAGC 1 cut(s) 3198
Bsp19I CCATGG 2 cut(s) 1234, 2176
BspACI CCGC 4 cut(s) 428, 996, 3991, 3993
BspANI GGCC 6 cut(s) 878, 1038, 1077, 2075, 2157, 3185
BspCNI CTCAG 9 cut(s) 703, 1465, 1506, 2382, 2684, 2710, 3211, 3267, 3550
BspFNI CGCG 1 cut(s) 3993
BspHI TCATGA 3 cut(s) 205, 1563, 2203
BspLI GGNNCC 4 cut(s) 250, 1358, 2573, 3108
BspMAI CTGCAG 3 cut(s) 16, 1119, 3172
BspMI ACCTGC 2 cut(s) 2044, 2464
BspPI GGATC 5 cut(s) 77, 81, 925, 1347, 3496
BspTNI GGTCTC 1 cut(s) 1661
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 981, 1614, 1850, 3571
BsrGI TGTACA 1 cut(s) 3749
BsrI ACTGG 8 cut(s) 762, 1358, 2446, 2539, 3186, 3263, 3710, 3917
BssECI CCNNGG 8 cut(s) 252, 778, 934, 1234, 1992, 2117, 2176, 3991
BssNAI GTATAC 2 cut(s) 1231, 3574
BssSI CACGAG 1 cut(s) 1949
BssT1I CCWWGG 5 cut(s) 934, 1234, 1992, 2117, 2176
Bst1107I GTATAC 2 cut(s) 1231, 3574
Bst2BI CACGAG 1 cut(s) 1949
Bst2UI CCWGG 5 cut(s) 254, 779, 1319, 2677, 2787
Bst4CI ACNGT 9 cut(s) 367, 745, 1904, 2023, 2650, 3047, 3530, 3960, 4072
Bst6I CTCTTC 3 cut(s) 817, 1437, 1824
BstAPI GCANNNNNTGC 1 cut(s) 3401
BstAUI TGTACA 1 cut(s) 3749
BstBAI YACGTR 1 cut(s) 1646
BstC8I GCNNGC 7 cut(s) 54, 1457, 1540, 2159, 2163, 2618, 2687
BstDSI CCRYGG 3 cut(s) 1234, 2176, 3991
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstFNI CGCG 1 cut(s) 3993
BstHHI GCGC 1 cut(s) 3564
BstMAI GTCTC 4 cut(s) 501, 1172, 1661, 3341
BstMWI GCNNNNNNNGC 6 cut(s) 1083, 2045, 2672, 2903, 3182, 3401
BstNI CCWGG 5 cut(s) 254, 779, 1319, 2677, 2787
BstNSI RCATGY 4 cut(s) 56, 1490, 1542, 3336
BstSCI CCNGG 5 cut(s) 252, 777, 1317, 2675, 2785
BstSFI CTRYAG 6 cut(s) 12, 1115, 1375, 2151, 2420, 3168
BstUI CGCG 1 cut(s) 3993
BstV1I GCAGC 7 cut(s) 118, 761, 1129, 1813, 2893, 2915, 3391
BstV2I GAAGAC 2 cut(s) 701, 1762
BstX2I RGATCY 2 cut(s) 86, 930
BstXI CCANNNNNNTGG 4 cut(s) 441, 785, 1150, 3141
BstYI RGATCY 2 cut(s) 86, 930
BstZ17I GTATAC 2 cut(s) 1231, 3574
BsuI GTATCC 2 cut(s) 2227, 4031
BsuRI GGCC 6 cut(s) 878, 1038, 1077, 2075, 2157, 3185
BtgI CCRYGG 3 cut(s) 1234, 2176, 3991
BtrI CACGTC 1 cut(s) 2883
BtsI GCAGTG 2 cut(s) 131, 3752
BtsIMutI CAGTG 8 cut(s) 131, 538, 755, 1393, 1511, 2504, 3703, 3752
BveI ACCTGC 2 cut(s) 2044, 2464
Cac8I GCNNGC 7 cut(s) 54, 1457, 1540, 2159, 2163, 2618, 2687
CaiI CAGNNNCTG 2 cut(s) 2021, 2389
CciI TCATGA 3 cut(s) 205, 1563, 2203
CfoI GCGC 1 cut(s) 3564
Cfr13I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 3933
Cfr42I CCGCGG 1 cut(s) 3994
CseI GACGC 1 cut(s) 872
CsiI ACCWGGT 1 cut(s) 2785
DraI TTTAAA 4 cut(s) 1414, 2241, 3328, 3972
DrdI GACNNNNNNGTC 1 cut(s) 1424
DriI GACNNNNNGTC 1 cut(s) 1766
DseDI GACNNNNNNGTC 1 cut(s) 1424
Eam1104I CTCTTC 3 cut(s) 817, 1437, 1824
Eam1105I GACNNNNNGTC 1 cut(s) 1766
EarI CTCTTC 3 cut(s) 817, 1437, 1824
Eco130I CCWWGG 5 cut(s) 934, 1234, 1992, 2117, 2176
Eco147I AGGCCT 1 cut(s) 1077
Eco24I GRGCYC 2 cut(s) 253, 2337
Eco31I GGTCTC 1 cut(s) 1661
Eco32I GATATC 2 cut(s) 1068, 1743
Eco47I GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 3933
Eco57I CTGAAG 9 cut(s) 60, 1148, 1236, 1909, 2243, 2280, 3460, 3641, 3801
Eco88I CYCGRG 1 cut(s) 3859
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 5 cut(s) 252, 777, 1317, 2675, 2785
EcoRV GATATC 2 cut(s) 1068, 1743
EcoT14I CCWWGG 5 cut(s) 934, 1234, 1992, 2117, 2176
EcoT22I ATGCAT 3 cut(s) 58, 1864, 3515
EcoT38I GRGCYC 2 cut(s) 253, 2337
ErhI CCWWGG 5 cut(s) 934, 1234, 1992, 2117, 2176
FalI AAGNNNNNCTT 6 cut(s) 1434, 1466, 1527, 1559, 2721, 2753
FaqI GGGAC 3 cut(s) 830, 1342, 2567
FauI CCCGC 1 cut(s) 3986
FauNDI CATATG 1 cut(s) 2593
FbaI TGATCA 2 cut(s) 202, 3630
FblI GTMKAC 2 cut(s) 1230, 3573
Fnu4HI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 2904, 2907, 3405
FriOI GRGCYC 2 cut(s) 253, 2337
Fsp4HI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 2904, 2907, 3405
GlaI GCGC 1 cut(s) 3563
GluI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 2904, 2907, 3405
GsaI CCCAGC 3 cut(s) 1043, 3059, 3137
GsuI CTGGAG 3 cut(s) 163, 1301, 2622
HaeIII GGCC 6 cut(s) 878, 1038, 1077, 2075, 2157, 3185
HapII CCGG 1 cut(s) 993
HgaI GACGC 1 cut(s) 872
HhaI GCGC 1 cut(s) 3564
Hin6I GCGC 1 cut(s) 3562
HinP1I GCGC 1 cut(s) 3562
HincII GTYRAC 2 cut(s) 1125, 2826
HindII GTYRAC 2 cut(s) 1125, 2826
HindIII AAGCTT 3 cut(s) 457, 1436, 3074
HpaI GTTAAC 1 cut(s) 2826
HpaII CCGG 1 cut(s) 993
HphI GGTGA 3 cut(s) 1034, 3473, 3640
Hpy166II GTNNAC 7 cut(s) 1125, 1231, 2826, 3464, 3574, 3736, 3752
Hpy8I GTNNAC 7 cut(s) 1125, 1231, 2826, 3464, 3574, 3736, 3752
Hpy99I CGWCG 3 cut(s) 264, 1667, 3008
HpyCH4III ACNGT 9 cut(s) 367, 745, 1904, 2023, 2650, 3047, 3530, 3960, 4072
HpyCH4IV ACGT 4 cut(s) 170, 259, 1645, 2882
HpyF10VI GCNNNNNNNGC 6 cut(s) 1083, 2045, 2672, 2903, 3182, 3401
HpySE526I ACGT 4 cut(s) 170, 259, 1645, 2882
HspAI GCGC 1 cut(s) 3562
Ksp22I TGATCA 2 cut(s) 202, 3630
KspAI GTTAAC 1 cut(s) 2826
KspI CCGCGG 1 cut(s) 3994
LmnI GCTCC 7 cut(s) 248, 435, 1091, 2119, 2489, 3319, 3425
Lsp1109I GCAGC 7 cut(s) 118, 761, 1129, 1813, 2893, 2915, 3391
LweI GCATC 9 cut(s) 65, 546, 961, 1849, 1963, 1997, 2884, 3416, 4038
MabI ACCWGGT 1 cut(s) 2785
MaeII ACGT 4 cut(s) 170, 259, 1645, 2882
MbiI CCGCTC 1 cut(s) 430
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 2 cut(s) 86, 930
MhlI GDGCHC 3 cut(s) 253, 2337, 3430
MlyI GAGTC 2 cut(s) 553, 1120
MmeI TCCRAC 2 cut(s) 1408, 3713
Mph1103I ATGCAT 3 cut(s) 58, 1864, 3515
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2736
MslI CAYNNNNRTG 4 cut(s) 51, 1485, 1648, 3220
MspA1I CMGCKG 3 cut(s) 1826, 2906, 3993
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 5 cut(s) 254, 779, 1319, 2677, 2787
MunI CAATTG 1 cut(s) 885
Mva1269I GAATGC 3 cut(s) 162, 2999, 3480
MvaI CCWGG 5 cut(s) 254, 779, 1319, 2677, 2787
MvnI CGCG 1 cut(s) 3993
MwoI GCNNNNNNNGC 6 cut(s) 1083, 2045, 2672, 2903, 3182, 3401
NcoI CCATGG 2 cut(s) 1234, 2176
NdeI CATATG 1 cut(s) 2593
NlaIV GGNNCC 4 cut(s) 250, 1358, 2573, 3108
NmuCI GTSAC 7 cut(s) 171, 1244, 2146, 2624, 3154, 3550, 3708
NsiI ATGCAT 3 cut(s) 58, 1864, 3515
NspI RCATGY 4 cut(s) 56, 1490, 1542, 3336
PaeI GCATGC 2 cut(s) 56, 1542
PagI TCATGA 3 cut(s) 205, 1563, 2203
PceI AGGCCT 1 cut(s) 1077
PctI GAATGC 3 cut(s) 162, 2999, 3480
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2736
PflMI CCANNNNNTGG 4 cut(s) 584, 1324, 3311, 3695
PfoI TCCNGGA 1 cut(s) 1317
PkrI GCNGC 9 cut(s) 13, 133, 429, 776, 1119, 1828, 2905, 2908, 3406
PleI GAGTC 2 cut(s) 553, 1120
PpsI GAGTC 2 cut(s) 553, 1120
Ppu21I YACGTR 1 cut(s) 1646
PpuMI RGGWCCY 1 cut(s) 36
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 5 cut(s) 252, 777, 1317, 2675, 2785
PspFI CCCAGC 3 cut(s) 1039, 3055, 3133
PspGI CCWGG 5 cut(s) 252, 777, 1317, 2675, 2785
PspN4I GGNNCC 4 cut(s) 250, 1358, 2573, 3108
PspPI GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 3933
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 4 cut(s) 3243, 3275, 4056, 4088
PstI CTGCAG 3 cut(s) 16, 1119, 3172
PstNI CAGNNNCTG 2 cut(s) 2021, 2389
PsuI RGATCY 2 cut(s) 86, 930
PvuII CAGCTG 2 cut(s) 1826, 2906
RseI CAYNNNNRTG 4 cut(s) 51, 1485, 1648, 3220
SacII CCGCGG 1 cut(s) 3994
SatI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 2904, 2907, 3405
Sau96I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 3933
ScaI AGTACT 3 cut(s) 1352, 1682, 2736
SchI GAGTC 2 cut(s) 553, 1120
ScrFI CCNGG 5 cut(s) 254, 779, 1319, 2677, 2787
SduI GDGCHC 3 cut(s) 253, 2337, 3430
SexAI ACCWGGT 1 cut(s) 2785
SfaNI GCATC 9 cut(s) 65, 546, 961, 1849, 1963, 1997, 2884, 3416, 4038
SfcI CTRYAG 6 cut(s) 12, 1115, 1375, 2151, 2420, 3168
Sfr303I CCGCGG 1 cut(s) 3994
SgrBI CCGCGG 1 cut(s) 3994
SinI GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 3933
SmiMI CAYNNNNRTG 4 cut(s) 51, 1485, 1648, 3220
SmlI CTYRAG 3 cut(s) 284, 498, 635
SmoI CTYRAG 3 cut(s) 284, 498, 635
SpeI ACTAGT 1 cut(s) 4090
SphI GCATGC 2 cut(s) 56, 1542
SseBI AGGCCT 1 cut(s) 1077
SsiI CCGC 4 cut(s) 428, 996, 3991, 3993
SspI AATATT 2 cut(s) 2865, 3495
StuI AGGCCT 1 cut(s) 1077
StyD4I CCNGG 5 cut(s) 252, 777, 1317, 2675, 2785
StyI CCWWGG 5 cut(s) 934, 1234, 1992, 2117, 2176
TaaI ACNGT 9 cut(s) 367, 745, 1904, 2023, 2650, 3047, 3530, 3960, 4072
TaiI ACGT 4 cut(s) 173, 262, 1648, 2885
TaqI TCGA 6 cut(s) 1464, 1662, 2416, 2804, 3003, 3674
TatI WGTACW 8 cut(s) 1350, 1680, 2734, 2942, 3265, 3597, 3749, 3985
TauI GCSGC 1 cut(s) 430
TscAI CASTG 8 cut(s) 131, 538, 762, 1393, 1518, 2511, 3710, 3759
TseFI GTSAC 7 cut(s) 171, 1244, 2146, 2624, 3154, 3550, 3708
TseI GCWGC 8 cut(s) 11, 131, 774, 1117, 1826, 2903, 2906, 3404
Tsp45I GTSAC 7 cut(s) 171, 1244, 2146, 2624, 3154, 3550, 3708
TspGWI ACGGA 3 cut(s) 1271, 3633, 3978
TspRI CASTG 8 cut(s) 131, 538, 762, 1393, 1518, 2511, 3710, 3759
Van91I CCANNNNNTGG 4 cut(s) 584, 1324, 3311, 3695
VpaK11BI GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 3933
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 3 cut(s) 385, 516, 2105
XbaI TCTAGA 2 cut(s) 1547, 1757
XceI RCATGY 4 cut(s) 56, 1490, 1542, 3336
XcmI CCANNNNNNNNNTGG 1 cut(s) 3312
XmiI GTMKAC 2 cut(s) 1230, 3573
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2736
ZrmI AGTACT 3 cut(s) 1352, 1682, 2736
Zsp2I ATGCAT 3 cut(s) 58, 1864, 3515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.