Rorug02G0539600

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000472
Physical Location & Seq
Forward (+)
66941163 .. 66943853
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0539600.1

Sequence Viewer

Length: 2529 bp
ATGGAGTCCAAAACAAACCCAAAATTCTTGCTTTCCTTGCTTTTCTTAAGCCTATGCCTCGAGTCTCATATCTGCTTTGGAGCTGACACCATCACAGCAAACCAGTCTCTCTCTGGTGACCAAACCATTGTTTCAGCTGGTGGGAAATTTGAGCTGGGTTTCTTCAAGGCAGGTAATACTTCAAACTACTACATAGGCATGTGGTACTACGAGACAGTAGTACCAGAGAAAACCATAGTCTGGGTGGCCAATAGGGTGCAGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATCTGGTGCTGTTTAATGAGTCCAAAACCCAAATTTGGTCCACAAATGTCAGTTCAAGTTCAGTTTCTTCTATACATGTAGTTCTTTCAGATAATGGAAACCTTGTGCTAAGAGCTGGGTCTGATTCATCTTTGCCTTTATGGCAAAGTTTTGATTATCCAGCTCATACTTGGCTACCAGGAGCTAGAATTGGGTTCAACACTGTTACAAACCAAACCCAAGTCCTGACTTCATGGAAGAATTCTGATGATCCTGCACCGGGTCTTTTCTCTCTTGAGCTTGACCCAAATGGAAGCGATGCATATTTCATACTGTGGAATAGGTCTATTCAGTATTGGACTAGTGGAGCTTGGGATCCAAACAATCGTATTTTCAGTTTGGTTCCTGAGATGAGGCTTAACTATATCTACAACTTCAGCTATGTTAAAAACAAAAATGAGAGCTACTTCACCTATTCTGTTTATGATCCTAGCATCACATCTCGATTCATAATGGATGTATCGGGTCAGATTAAGCAAGTGTCCTGGTTGAAAACTGGGGGGTGGAACTTGTTTTGGTCTCAACCAAGGAAACAATGTGAGGTTTATGCTTATTGTGGGGCATTTGGCAGTTGCAATGAGATTTCTCGGCCATTCTGTAATTGTTTGAATGGTTTTGAGCCGAAATCGAAGGTGGACTGGGATTTGCAGGATTATTCTGGTGGCTGCAAAAGACGGACTACGCTGAATTGTGGGAATGGTACTAATGGTACTACTGATAATGGAAAGAAACTGAAGAAAGACCGTTTTCGAGAACTGACTAGCATGTCATTGCCTGTGGGTGGTCAATCTGTGGAGTTTGAGAGTACTTCTTCGCAATGTGAATCTTTTTGCTTCAATAATTGCAGTTGCACTGCTTATGCATATGTCAACAATAATTGTTCAATTTGGTCTGGAGAGCTCTTGAGTCTGCAACAACTCACAGCAGATGACGGTAATGGAAAAACTTTGAACCTCAGACTTGCAGCTTCCGAGTTTAAGGATCCGAAAAGTAAAAAGGGATTGATTATCGGTGTTACAGTAGGCTCAGCTGTTGGGATAGCAGTTCTTTTAGGCCTTATTGTGGTTGCGGTGTTGAGAAACAGAAATAGAGTGATTGGAAAATCAGTGGAGGGTTCATTGGTGGCATTTGAGTATAGAGATCTTCAAGAAGTAACAAAGAACTTCTCGGAGAAATTGGGGGGAGGAGGTTTTGGTTCTGTCTTCAAGGGCACAATGCCTGATTCATCAGTCATAGCAGTGAAGAAGCTCGAAAGTGTTAGCCAAGGAGAGAAGCAATTCAGAACAGAAGTCAGCACAATTGGGACAATCCAACATGTCAATCTCGTTCGGCTTCGTGGGTTCTGCTCTGAAGGTGCCAAGAGGTTGTTGGTCTATGATTACATGCCTAATGGATCTCTGGATGCTCACCTTTTCAATCAGCCAAGCGATGTTTTGGAGTGGAATACAAGATACCAAATTGCTCTGGGGACAGCAAGAGGGTTGGCTTATCTTCATGAGAAATGTAGAGATTGTATCATACATTGCGACATAAAGCCAGAAAACATTCTCCTAGATACTGAACTTTGTCCCAAAGTTGCTGACTTTGGCCTGGCAAAGCTTGTTGGAAGAGAGTTCAGCCGAGTCCTGACCACAATGAGAGGCACACGAGGCTATCTTGCACCAGAGTGGATTTCAGGAGTGGCAGTCACAGCAAAAGCTGATGTTTACAGCTACGGAATGATGCTCTTCGAAATTGTATCAGGAAGACGAAACTCTGAGCCATCTGAAGACGGCAAAGTTAGATTCTTCCCAACTTGGGCTGCTGGCGTGGTCACGAGTAACGAAGAAGGCGATGTGCTGAGCCTATTGGACCCGAAATTAGGGAGAAATGGTGATGCGGAAGAGATCATGAGGGTTCTTAGAGTTGCTTGCTGGTGTGTCCAAGATGATGAGGCTCATAGACCATCAATGGGTCAAGTGGTGCAGATTCTCGAGGGGGTTTTGGATGTGAACATGCCCTGGATTCCAAGATCACTCCAACTCTTTGGAGATAGCCAGCACATAGTTTTCTTCACAGAGTCATCTTCAAGCCAGAGCTCACATGCACCAAGCAATAACATATCAACAGCTTCATCTCAGACCAAGAGCGCTGCATCTTCAACTGTCTCCAAGAGATCTGAAGATCATCAAACGAGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

842

Amino Acids

93.18

Weight (kDa)

6.32

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 78 - 182 1.1e-32 D-mannose binding lectin
S_locus_glycop PF00954 215 - 325 1e-29 S-locus glycoprotein domain
PAN_2 PF08276 361 - 418 2e-13 PAN-like domain
PK_Tyr_Ser-Thr PF07714 504 - 772 1.3e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 505 - 771 4.7e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1111
Acc36I ACCTGC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 1700
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 2 cut(s) 1415, 2225
AclWI GGATC 7 cut(s) 551, 656, 669, 767, 1322, 1335, 1747
AcoI YGGCCR 2 cut(s) 246, 935
AcsI RAATTY 4 cut(s) 23, 146, 339, 547
AcuI CTGAAG 6 cut(s) 267, 706, 1100, 1716, 2133, 2526
AfaI GTAC 5 cut(s) 206, 222, 1048, 1057, 1153
AfeI AGCGCT 1 cut(s) 2476
AfiI CCNNNNNNNGG 8 cut(s) 240, 342, 566, 1127, 1408, 2143, 2207, 2297
AflII CTTAAG 1 cut(s) 46
AflIII ACRYGT 2 cut(s) 382, 1660
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 4 cut(s) 484, 830, 1935, 2345
AleI CACNNNNGTG 1 cut(s) 2011
Alw21I GWGCWC 3 cut(s) 1248, 2426, 2525
Alw26I GTCTC 6 cut(s) 69, 111, 206, 271, 870, 2497
AlwI GGATC 7 cut(s) 551, 656, 669, 767, 1322, 1335, 1747
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 2 cut(s) 59, 2318
Aor51HI AGCGCT 1 cut(s) 2476
AoxI GGCC 4 cut(s) 246, 935, 1399, 1933
ApeKI GCWGC 5 cut(s) 259, 1011, 1310, 2147, 2477
ApoI RAATTY 4 cut(s) 23, 146, 339, 547
Asp700I GAANNNNTTC 2 cut(s) 1622, 1890
AspLEI GCGC 1 cut(s) 2477
AspS9I GGNCC 2 cut(s) 345, 2197
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 128, 748, 1745, 2231
AsuII TTCGAA 1 cut(s) 2076
AvaI CYCGRG 2 cut(s) 59, 2318
AvaII GGWCC 2 cut(s) 345, 2197
BaeGI GKGCMC 1 cut(s) 1559
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 248
BamHI GGATCC 2 cut(s) 661, 1327
BanI GGYRCC 1 cut(s) 1700
BanII GRGCYC 2 cut(s) 1248, 2426
BauI CACGAG 2 cut(s) 1992, 2161
BbsI GAAGAC 3 cut(s) 1540, 2098, 2121
Bbv12I GWGCWC 3 cut(s) 1248, 2426, 2525
BbvI GCAGC 5 cut(s) 271, 998, 1322, 2134, 2464
BccI CCATC 4 cut(s) 98, 296, 2116, 2299
BceAI ACGGC 1 cut(s) 2134
BciT130I CCWGG 4 cut(s) 486, 832, 1937, 2347
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 6 cut(s) 69, 111, 206, 271, 870, 2497
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 5 cut(s) 492, 648, 777, 1107, 1898
BfoI RGCGCY 1 cut(s) 2478
BfrI CTTAAG 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 448
BglII AGATCT 2 cut(s) 1486, 2501
BisI GCNGC 5 cut(s) 260, 1012, 1311, 2148, 2478
BlpI GCTNAGC 2 cut(s) 1372, 2186
BlsI GCNGC 5 cut(s) 261, 1013, 1312, 2149, 2479
BmcAI AGTACT 1 cut(s) 1153
Bme1390I CCNGG 5 cut(s) 486, 567, 832, 1937, 2347
Bme18I GGWCC 2 cut(s) 345, 2197
BmeT110I CYCGRG 2 cut(s) 59, 2318
BmgT120I GGNCC 2 cut(s) 345, 2197
BmiI GGNNCC 5 cut(s) 663, 690, 1329, 1702, 2199
BmrFI CCNGG 5 cut(s) 486, 567, 832, 1937, 2347
BmrI ACTGGG 2 cut(s) 852, 994
BmsI GCATC 6 cut(s) 595, 789, 1738, 2058, 2212, 2489
BmuI ACTGGG 2 cut(s) 852, 994
BpiI GAAGAC 3 cut(s) 1540, 2098, 2121
BpmI CTGGAG 1 cut(s) 1260
Bpu1102I GCTNAGC 2 cut(s) 1372, 2186
Bpu14I TTCGAA 1 cut(s) 2076
BpuEI CTTGAG 2 cut(s) 602, 1270
BpuMI CCSGG 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 3 cut(s) 872, 1609, 2345
BsaXI ACNNNNNCTCC 4 cut(s) 2016, 2046, 2203, 2233
Bsc4I CCNNNNNNNGG 8 cut(s) 240, 342, 566, 1127, 1408, 2143, 2207, 2297
Bse1I ACTGG 4 cut(s) 103, 263, 847, 989
Bse3DI GCAATG 4 cut(s) 928, 1115, 1169, 1867
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 4 cut(s) 486, 832, 1937, 2347
BseDI CCNNGG 3 cut(s) 872, 1609, 2345
BseGI GGATG 3 cut(s) 808, 1753, 2338
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 8 cut(s) 240, 342, 566, 1127, 1408, 2143, 2207, 2297
BseMI GCAATG 4 cut(s) 928, 1115, 1169, 1867
BseMII CTCAG 7 cut(s) 312, 684, 1315, 1386, 2094, 2177, 2477
BseNI ACTGG 4 cut(s) 103, 263, 847, 989
BseRI GAGGAG 1 cut(s) 1545
BseSI GKGCMC 1 cut(s) 1559
BseXI GCAGC 5 cut(s) 271, 998, 1322, 2134, 2464
BseYI CCCAGC 2 cut(s) 154, 422
BsgI GTGCAG 3 cut(s) 278, 546, 2330
BshFI GGCC 4 cut(s) 248, 937, 1401, 1935
BshNI GGYRCC 1 cut(s) 1700
BsiHKAI GWGCWC 3 cut(s) 1248, 2426, 2525
BsiHKCI CYCGRG 2 cut(s) 59, 2318
BsiSI CCGG 1 cut(s) 566
BslFI GGGAC 3 cut(s) 1663, 1828, 1899
BslI CCNNNNNNNGG 8 cut(s) 240, 342, 566, 1127, 1408, 2143, 2207, 2297
BsmAI GTCTC 6 cut(s) 69, 111, 206, 271, 870, 2497
BsmFI GGGAC 3 cut(s) 1663, 1828, 1899
BsnI GGCC 4 cut(s) 248, 937, 1401, 1935
Bso31I GGTCTC 1 cut(s) 870
BsoBI CYCGRG 2 cut(s) 59, 2318
Bsp119I TTCGAA 1 cut(s) 2076
Bsp1286I GDGCHC 4 cut(s) 1248, 1559, 2426, 2525
Bsp1720I GCTNAGC 2 cut(s) 1372, 2186
BspACI CCGC 2 cut(s) 1415, 2225
BspANI GGCC 4 cut(s) 248, 937, 1401, 1935
BspCNI CTCAG 7 cut(s) 311, 685, 1314, 1385, 2095, 2178, 2476
BspHI TCATGA 2 cut(s) 1840, 2235
BspLI GGNNCC 5 cut(s) 663, 690, 1329, 1702, 2199
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 7 cut(s) 551, 656, 669, 767, 1322, 1335, 1747
BspQI GCTCTTC 1 cut(s) 2078
BspT104I TTCGAA 1 cut(s) 2076
BspT107I GGYRCC 1 cut(s) 1700
BspTI CTTAAG 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 870
BsrDI GCAATG 4 cut(s) 928, 1115, 1169, 1867
BsrI ACTGG 4 cut(s) 103, 263, 847, 989
BssECI CCNNGG 3 cut(s) 872, 1609, 2345
BssSI CACGAG 2 cut(s) 1992, 2161
BssT1I CCWWGG 2 cut(s) 872, 1609
Bst2BI CACGAG 2 cut(s) 1992, 2161
Bst2UI CCWGG 4 cut(s) 486, 832, 1937, 2347
Bst4CI ACNGT 7 cut(s) 217, 511, 621, 1091, 1280, 1366, 2491
Bst6I CTCTTC 3 cut(s) 1948, 2078, 2223
BstAFI CTTAAG 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 2076
BstC8I GCNNGC 3 cut(s) 2152, 2257, 2384
BstDEI CTNAG 9 cut(s) 298, 416, 693, 1301, 1372, 2103, 2186, 2246, 2463
BstEII GGTNACC 1 cut(s) 116
BstF5I GGATG 3 cut(s) 808, 1753, 2338
BstH2I RGCGCY 1 cut(s) 2478
BstHHI GCGC 1 cut(s) 2477
BstMAI GTCTC 6 cut(s) 69, 111, 206, 271, 870, 2497
BstMWI GCNNNNNNNGC 4 cut(s) 37, 448, 1995, 2036
BstNI CCWGG 4 cut(s) 486, 832, 1937, 2347
BstNSI RCATGY 7 cut(s) 202, 386, 1114, 1664, 1732, 2344, 2432
BstPI GGTNACC 1 cut(s) 116
BstSCI CCNGG 5 cut(s) 484, 565, 830, 1935, 2345
BstSLI GKGCMC 1 cut(s) 1559
BstV1I GCAGC 5 cut(s) 271, 998, 1322, 2134, 2464
BstV2I GAAGAC 3 cut(s) 1540, 2098, 2121
BstX2I RGATCY 5 cut(s) 661, 1327, 1486, 1739, 2501
BstXI CCANNNNNNTGG 1 cut(s) 2372
BstYI RGATCY 5 cut(s) 661, 1327, 1486, 1739, 2501
BsuRI GGCC 4 cut(s) 248, 937, 1401, 1935
BtgZI GCGATG 3 cut(s) 618, 1788, 2193
BtsCI GGATG 3 cut(s) 808, 1753, 2338
BtsI GCAGTG 2 cut(s) 1197, 1590
BtsIMutI CAGTG 4 cut(s) 507, 1197, 1458, 1590
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 2152, 2257, 2384
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 2 cut(s) 1840, 2235
CfoI GCGC 1 cut(s) 2477
Cfr13I GGNCC 2 cut(s) 345, 2197
Csp6I GTAC 5 cut(s) 205, 221, 1047, 1056, 1152
CviQI GTAC 5 cut(s) 205, 221, 1047, 1056, 1152
DdeI CTNAG 9 cut(s) 298, 416, 693, 1301, 1372, 2103, 2186, 2246, 2463
DrdI GACNNNNNNGTC 1 cut(s) 1111
DseDI GACNNNNNNGTC 1 cut(s) 1111
EaeI YGGCCR 2 cut(s) 246, 935
Eam1104I CTCTTC 3 cut(s) 1948, 2078, 2223
EarI CTCTTC 3 cut(s) 1948, 2078, 2223
Ecl136II GAGCTC 2 cut(s) 1246, 2424
Eco130I CCWWGG 2 cut(s) 872, 1609
Eco147I AGGCCT 1 cut(s) 1401
Eco24I GRGCYC 2 cut(s) 1248, 2426
Eco31I GGTCTC 1 cut(s) 870
Eco47I GGWCC 2 cut(s) 345, 2197
Eco47III AGCGCT 1 cut(s) 2476
Eco53kI GAGCTC 2 cut(s) 1246, 2424
Eco57I CTGAAG 6 cut(s) 267, 706, 1100, 1716, 2133, 2526
Eco88I CYCGRG 2 cut(s) 59, 2318
Eco91I GGTNACC 1 cut(s) 116
EcoICRI GAGCTC 2 cut(s) 1246, 2424
EcoO65I GGTNACC 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 4 cut(s) 484, 830, 1935, 2345
EcoT14I CCWWGG 2 cut(s) 872, 1609
EcoT22I ATGCAT 2 cut(s) 610, 1210
EcoT38I GRGCYC 2 cut(s) 1248, 2426
ErhI CCWWGG 2 cut(s) 872, 1609
FaqI GGGAC 3 cut(s) 1663, 1828, 1899
FauNDI CATATG 1 cut(s) 1210
Fnu4HI GCNGC 5 cut(s) 260, 1012, 1311, 2148, 2478
FokI GGATG 3 cut(s) 815, 1760, 2345
FriOI GRGCYC 2 cut(s) 1248, 2426
Fsp4HI GCNGC 5 cut(s) 260, 1012, 1311, 2148, 2478
FspBI CTAG 5 cut(s) 492, 648, 777, 1107, 1898
GlaI GCGC 1 cut(s) 2476
GluI GCNGC 5 cut(s) 260, 1012, 1311, 2148, 2478
GsaI CCCAGC 2 cut(s) 158, 426
GsuI CTGGAG 1 cut(s) 1260
HaeII RGCGCY 1 cut(s) 2478
HaeIII GGCC 4 cut(s) 248, 937, 1401, 1935
HapII CCGG 1 cut(s) 566
HhaI GCGC 1 cut(s) 2477
Hin6I GCGC 1 cut(s) 2475
HinP1I GCGC 1 cut(s) 2475
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HindIII AAGCTT 1 cut(s) 1943
HpaII CCGG 1 cut(s) 566
HphI GGTGA 4 cut(s) 128, 748, 1745, 2231
Hpy166II GTNNAC 5 cut(s) 348, 982, 1216, 2053, 2338
Hpy8I GTNNAC 5 cut(s) 348, 982, 1216, 2053, 2338
HpyAV CCTTC 3 cut(s) 970, 1691, 2168
HpyCH4III ACNGT 7 cut(s) 217, 511, 621, 1091, 1280, 1366, 2491
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 448, 1995, 2036
HpyF3I CTNAG 9 cut(s) 298, 416, 693, 1301, 1372, 2103, 2186, 2246, 2463
HspAI GCGC 1 cut(s) 2475
LguI GCTCTTC 1 cut(s) 2078
LmnI GCTCC 3 cut(s) 80, 488, 653
Lsp1109I GCAGC 5 cut(s) 271, 998, 1322, 2134, 2464
LweI GCATC 6 cut(s) 595, 789, 1738, 2058, 2212, 2489
MaeI CTAG 5 cut(s) 492, 648, 777, 1107, 1898
MaeIII GTNAC 7 cut(s) 116, 511, 1360, 1498, 2032, 2158, 2165
MfeI CAATTG 1 cut(s) 1644
MflI RGATCY 5 cut(s) 661, 1327, 1486, 1739, 2501
MhlI GDGCHC 4 cut(s) 1248, 1559, 2426, 2525
MlsI TGGCCA 1 cut(s) 248
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 6 cut(s) 14, 71, 335, 1261, 1977, 2414
MmeI TCCRAC 3 cut(s) 1681, 1930, 2389
Mox20I TGGCCA 1 cut(s) 248
Mph1103I ATGCAT 2 cut(s) 610, 1210
MroXI GAANNNNTTC 2 cut(s) 1622, 1890
MscI TGGCCA 1 cut(s) 248
MseI TTAA 6 cut(s) 47, 321, 705, 732, 819, 1323
MslI CAYNNNNRTG 3 cut(s) 197, 1583, 2011
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 137, 1376
MspCI CTTAAG 1 cut(s) 46
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 5 cut(s) 486, 567, 832, 1937, 2347
MunI CAATTG 1 cut(s) 1644
MvaI CCWGG 4 cut(s) 486, 832, 1937, 2347
MwoI GCNNNNNNNGC 4 cut(s) 37, 448, 1995, 2036
NciI CCSGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 1210
NlaIV GGNNCC 5 cut(s) 663, 690, 1329, 1702, 2199
NmeAIII GCCGAG 2 cut(s) 913, 1991
NmuCI GTSAC 3 cut(s) 116, 2032, 2158
NsiI ATGCAT 2 cut(s) 610, 1210
NspI RCATGY 7 cut(s) 202, 386, 1114, 1664, 1732, 2344, 2432
NspV TTCGAA 1 cut(s) 2076
OliI CACNNNNGTG 1 cut(s) 2011
PaeR7I CTCGAG 2 cut(s) 59, 2318
PagI TCATGA 2 cut(s) 1840, 2235
PceI AGGCCT 1 cut(s) 1401
PciI ACATGT 2 cut(s) 382, 1660
PciSI GCTCTTC 1 cut(s) 2078
PcsI WCGNNNNNNNCGW 1 cut(s) 2175
PdmI GAANNNNTTC 2 cut(s) 1622, 1890
PfeI GAWTC 8 cut(s) 294, 431, 792, 1169, 1568, 2130, 2314, 2350
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 5 cut(s) 261, 1013, 1312, 2149, 2479
PleI GAGTC 6 cut(s) 13, 70, 334, 1260, 1976, 2413
PpsI GAGTC 6 cut(s) 13, 70, 334, 1260, 1976, 2413
PscI ACATGT 2 cut(s) 382, 1660
Psp124BI GAGCTC 2 cut(s) 1248, 2426
Psp6I CCWGG 4 cut(s) 484, 830, 1935, 2345
PspEI GGTNACC 1 cut(s) 116
PspFI CCCAGC 2 cut(s) 154, 422
PspGI CCWGG 4 cut(s) 484, 830, 1935, 2345
PspN4I GGNNCC 5 cut(s) 663, 690, 1329, 1702, 2199
PspPI GGNCC 2 cut(s) 345, 2197
PspXI VCTCGAGB 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 5 cut(s) 661, 1327, 1486, 1739, 2501
PvuII CAGCTG 2 cut(s) 137, 1376
RsaI GTAC 5 cut(s) 206, 222, 1048, 1057, 1153
RsaNI GTAC 5 cut(s) 205, 221, 1047, 1056, 1152
RseI CAYNNNNRTG 3 cut(s) 197, 1583, 2011
SacI GAGCTC 2 cut(s) 1248, 2426
SapI GCTCTTC 1 cut(s) 2078
SaqAI TTAA 6 cut(s) 47, 321, 705, 732, 819, 1323
SatI GCNGC 5 cut(s) 260, 1012, 1311, 2148, 2478
Sau96I GGNCC 2 cut(s) 345, 2197
ScaI AGTACT 1 cut(s) 1153
SchI GAGTC 6 cut(s) 14, 71, 335, 1261, 1977, 2414
ScrFI CCNGG 5 cut(s) 486, 567, 832, 1937, 2347
SduI GDGCHC 4 cut(s) 1248, 1559, 2426, 2525
SfaNI GCATC 6 cut(s) 595, 789, 1738, 2058, 2212, 2489
Sfr274I CTCGAG 2 cut(s) 59, 2318
SfuI TTCGAA 1 cut(s) 2076
SinI GGWCC 2 cut(s) 345, 2197
SlaI CTCGAG 2 cut(s) 59, 2318
SmiMI CAYNNNNRTG 3 cut(s) 197, 1583, 2011
SmlI CTYRAG 5 cut(s) 46, 59, 581, 1249, 2318
SmoI CTYRAG 5 cut(s) 46, 59, 581, 1249, 2318
SpeI ACTAGT 1 cut(s) 647
SseBI AGGCCT 1 cut(s) 1401
SsiI CCGC 2 cut(s) 1415, 2225
SspMI CTAG 5 cut(s) 492, 648, 777, 1107, 1898
SstI GAGCTC 2 cut(s) 1248, 2426
StuI AGGCCT 1 cut(s) 1401
StyD4I CCNGG 5 cut(s) 484, 565, 830, 1935, 2345
StyI CCWWGG 2 cut(s) 872, 1609
TaaI ACNGT 7 cut(s) 217, 511, 621, 1091, 1280, 1366, 2491
TaqI TCGA 7 cut(s) 60, 790, 974, 1096, 1596, 2076, 2319
TatI WGTACW 1 cut(s) 1151
TfiI GAWTC 8 cut(s) 294, 431, 792, 1169, 1568, 2130, 2314, 2350
Tru1I TTAA 6 cut(s) 47, 321, 705, 732, 819, 1323
Tru9I TTAA 6 cut(s) 47, 321, 705, 732, 819, 1323
TscAI CASTG 4 cut(s) 514, 1204, 1458, 1590
TseFI GTSAC 3 cut(s) 116, 2032, 2158
TseI GCWGC 5 cut(s) 259, 1011, 1310, 2147, 2477
Tsp45I GTSAC 3 cut(s) 116, 2032, 2158
TspDTI ATGAA 8 cut(s) 423, 528, 604, 784, 1452, 1560, 1829, 2448
TspGWI ACGGA 2 cut(s) 1036, 2076
TspRI CASTG 4 cut(s) 514, 1204, 1458, 1590
Van91I CCANNNNNTGG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 345, 2197
XapI RAATTY 4 cut(s) 23, 146, 339, 547
XceI RCATGY 7 cut(s) 202, 386, 1114, 1664, 1732, 2344, 2432
XcmI CCANNNNNNNNNTGG 4 cut(s) 110, 241, 474, 1711
XhoI CTCGAG 2 cut(s) 59, 2318
XmnI GAANNNNTTC 2 cut(s) 1622, 1890
XspI CTAG 5 cut(s) 492, 648, 777, 1107, 1898
ZrmI AGTACT 1 cut(s) 1153
Zsp2I ATGCAT 2 cut(s) 610, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.